Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calopteryx_20splendens_20[genbank_20GCA_5F002093875.1_202017-04-14] 8,896 sequences; 1,628,352,544 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq4065 125 9e-24 seq2351 114 2e-20 seq361 107 2e-18 seq673 87.8 2e-12 >seq4065 Length=69253 Score = 125 bits (138), Expect = 9e-24 Identities = 163/223 (73%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| |||| | ||| | ||| || || || || | || ||||| ||||| | ||||| Sbjct 28146 CCTCATCTCGAGAAATAAGTTCATTGGAGAAGGTCAACCCTGGCATGAGGCCCCTCTTTT 28087 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 |||||||||| |||||||| |||||||| || || || |||||||| |||| |||||| | Sbjct 28086 TAAGCCAAAAGATGGAAGCAAATGATCCAGAGAAAAATATTCCTTCAACTGAAGCAAACG 28027 Query 33724 CAATAAGTCTCTCTCCATAACCGGCGCTGTCA--TG-TATCCACTTTTGAGCCCAATCGG 33780 ||| || | |||||| | || | ||| || ||||||| | ||||| | || Sbjct 28026 CAACAATGCGTTCTCCAAATGTTGCCTTATCACTTGCAATCCACTGCAGTGCCCAGTGGG 27967 Query 33781 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 33823 | ||||| | |||||||||| || || | |||||||| || Sbjct 27966 CTTTCTTGCTCACACAAGGCAATGTCTCCACTGCATTAAACAG 27924 Score = 84.2 bits (92), Expect = 3e-11 Identities = 125/175 (71%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTA-TACATTTCCGAATGAATGTTTTCAATGG 33900 |||||||| ||||||||||| | | || | |||||||| ||||| | ||||| || | Sbjct 27765 ATCTTTAATGTAAGTATCGATGAGTA-ACGAGTACATTTCTGAATGCACATTTTCCATTG 27707 Query 33901 CCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTT 33960 | ||||| || || || ||||| | || |||| || || || ||| | || | || Sbjct 27706 CAATCTGGAAGCCATAAAAACACCGCGCTTCGGGTATTTGTACCTCTTGGCTGAACCTTT 27647 Query 33961 CTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATG 34015 | | | |||||| ||||| || ||||| || |||||||| || | |||||| Sbjct 27646 CCACGAGATTTTCGTTCACAATGCCATCTGAAGCAGCAAAAAAGGCAAGTACATG 27592 >seq2351 Length=162851 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 64017 TTTTTTGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCC 64076 |||||||||||||| || ||||| |||| ||||||||| ||||| || ||||||||||| Sbjct 147490 TTTTTTGTTTCCTTATGAAGATTAGATACGGCTATTCTCGCGGCAAGTATGGCATAATCT 147431 Query 64077 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 64136 || || | || || ||| |||||| |||| ||||||| | | |||| || || ||| Sbjct 147430 GGGTGCTTCGTTGTCATAGTTGCTGCTGTTTCTGCTGCCAAATTATCCAGCTCAACAGTT 147371 Query 64137 GTTACTCCATTATATA 64152 ||||| ||| ||||| Sbjct 147370 GTTACCCCAGAATATA 147355 Score = 104 bits (114), Expect = 3e-17 Identities = 114/149 (77%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 63267 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATG 63325 || || ||||| || | ||||||||||||||| || ||| || ||||| | | ||| Sbjct 160780 ACACGCTTCATGAACAAATCAGGAATCCAAAGGGC-ATAGAAGAGATCACGAGCTCTGAC 160722 Query 63326 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63385 ||||| || ||||| |||||||| | ||| | ||| | | ||||||||||||||||| Sbjct 160721 CTCCTCCTTCCCTGTGTTCTTTTTCAAATCTAAAAACTCAAAGATATCAGAATGCCACGG 160662 Query 63386 TTCCAAGTATATGGCCATAACTCCAGGCC 63414 ||||||||| ||||| | | ||||||| Sbjct 160661 TTCCAAGTAAATGGCAAATGCACCAGGCC 160633 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/216 (70%), Gaps = 5/216 (2%) Strand=Plus/Minus Query 63417 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63476 || |||||||| || |||| |||| ||||||||| ||||| |||| | ||| |||| Sbjct 158021 TTATTTCCTCCTTGGTCTACATATCGAGCGGTGTTGTTATACACTCGAAGCATAGGAACT 157962 Query 63477 ATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAAT--ATTAC 63534 | ||| || || ||||||||||| || || || || | ||| | || | ||| | | Sbjct 157961 ACACCATTGGAAATACCATTGGTGCCAGATATGTAACTGCCAGTTGCTCTAATGCAGTGT 157902 Query 63535 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGT 63594 ||| || || || || || || || || | ||||| ||| | ||| |||| Sbjct 157901 ATATT--CAGCCCAATGCCTCCAGCAGACTTGGACACCAATGCACATTGCCTTAGTGTGT 157844 Query 63595 CATAGATGCCTTCTATGCTATCATCGATCA-TGTTA 63629 ||||||| || || ||||| ||||| ||| ||||| Sbjct 157843 CATAGATACCCTCAATGCTGTCATCTTTCATTGTTA 157808 Score = 84.2 bits (92), Expect = 3e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 63642 CTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63701 || || | ||| |||||| ||| | |||||||| | ||||||||||| || || || Sbjct 157622 CTTGAGAGTTGAGGACGAGGTGTTGCAGCATTAAACAGTGTAGGAGAAGCATGAGTGAAG 157563 Query 63702 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63761 | ||||| | ||||| || |||||||| || | || | |||| ||| | | Sbjct 157562 AAGCGCTCAGACAAGAGATTATAAGTCTCAATGGCAGCATCCACATCCTCACCATGGACT 157503 Query 63762 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTC 63821 || || | |||||||| | |||||||||||| | ||| |||| ||| | || ||| Sbjct 157502 CCGACAGAAACACGCATCAGCATGTGCTGAGGACGTTCCACAACTTTCCCATCAATCTTC 157443 Query 63822 AACAAGTAGGA 63832 | || |||||| Sbjct 157442 AGCAGGTAGGA 157432 >seq361 Length=596180 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 62619 GATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAAT 62678 || ||| ||| || ||||| || || | ||| || || | || |||||| || || || Sbjct 1365 GACCCTTTATAGGTTTCATAGGGACCGTACTTTTCTGCAAATTCACAACTTGCTTCCAAG 1306 Query 62679 GCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCA 62738 ||||| || ||||| |||||||| |||||||| || | || | || || || ||| Sbjct 1305 GCACCATAGTAAATAGTTTCAAATATCTTCTTGTTCAAGTCCCGAGCACCCTCACTGTCA 1246 Query 62739 AATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGT 62798 || || | | | | || || | ||| || || ||||||||||||||||| || ||| Sbjct 1245 AAAGGCAACCTCATTAAGATGAAAGTGTCAGCCAACCCTTGAACACCAATACCAATGGGT 1186 Query 62799 CTATGTCTCTTATTAGA 62815 ||||||||| |||| || Sbjct 1185 CTATGTCTCATATTTGA 1169 Score = 95.1 bits (104), Expect = 2e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || ||||||||||| || | || |||| ||||||||| || || || ||||| | Sbjct 1711 ACCTGGAATTCTCCTGAGAGGACCCTCCTAGTGTAAATGTTTGATGTGTATGGTTCGATT 1652 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62499 |||||||| || |||||||||||||| || || || || ||||||||||||| Sbjct 1651 GACTCATTGTTCCCCAAAATTTGAGCTGTAGAAGCTGTGGGCATAGGTGCCA 1600 >seq673 Length=542023 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 155309 TTAAAAAATTTCCATCAGGAATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGTACAAG 155368 ||||||||| || || ||| || | ||| |||| || |||||||||||||| |||| Sbjct 393982 TTAAAAAATGCCCTAATGGCATGATTTCAGAAATCAAGTATGATGGTGAAAGAGTTCAAG 393923 Query 155369 TTCATaaaaaaaaTAACGAGTTTGCATTCTTTAGTAGAAACATGAAACCAGTACTCTCTC 155428 ||||||||||| || || || || |||| |||| | | |||||||||||| | | Sbjct 393922 TTCATAAAAAAGGAAAGGATTTCAAATACTTTTCAAGAAGCTTAAAACCAGTACTCCCAC 393863 Query 155429 ATAAAGTG 155436 | |||||| Sbjct 393862 ACAAAGTG 393855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629747564282880