Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calopteryx_20splendens_20[genbank_20GCA_5F002093875.1_202017-04-14] 8,896 sequences; 1,628,352,544 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq4065 140 4e-28 seq2351 113 6e-20 seq361 104 3e-17 >seq4065 Length=69253 Score = 140 bits (154), Expect = 4e-28 Identities = 166/223 (74%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||| | ||| | ||| ||||| || || | || ||||| ||||| | ||||| Sbjct 28146 CCTCATCTCGAGAAATAAGTTCATTGGAGAAGGTCAACCCTGGCATGAGGCCCCTCTTTT 28087 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 |||||||||| ||||| |||||||||||||| || || |||||||| |||| ||||| | Sbjct 28086 TAAGCCAAAAGATGGAAGCAAATGATCCAGAGAAAAATATTCCTTCAACTGAAGCAAACG 28027 Query 36300 CAATAAGTCTCTCTCCATAACCGGCACTGTCA--TG-TATCCACTTTTGAGCCCAATCGG 36356 ||| || | |||||| | || | ||| || ||||||| | ||||| | || Sbjct 28026 CAACAATGCGTTCTCCAAATGTTGCCTTATCACTTGCAATCCACTGCAGTGCCCAGTGGG 27967 Query 36357 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 36399 | ||||| | |||||||||| |||||| | |||||||| || Sbjct 27966 CTTTCTTGCTCACACAAGGCAATGTCTCCACTGCATTAAACAG 27924 >seq2351 Length=162851 Score = 113 bits (124), Expect = 6e-20 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 66810 TTTTTTGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCC 66869 ||||||||||| || || ||||| |||||||||||||| ||||| | ||||||||||| Sbjct 147490 TTTTTTGTTTCCTTATGAAGATTAGATACGGCTATTCTCGCGGCAAGTATGGCATAATCT 147431 Query 66870 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 66929 || || | || || ||| |||||| |||| ||||||| | | |||| || || ||| Sbjct 147430 GGGTGCTTCGTTGTCATAGTTGCTGCTGTTTCTGCTGCCAAATTATCCAGCTCAACAGTT 147371 Query 66930 GTTACTCCATTATATATTCCTTGGATAACCTT 66961 ||||| ||| ||||| || |||||| || Sbjct 147370 GTTACCCCAGAATATAAACCACTGATAACTTT 147339 Score = 96.9 bits (106), Expect = 5e-15 Identities = 159/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 65982 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 66041 || ||||| || |||||| || | || ||||| | ||| || ||||| || | Sbjct 160858 TCAAACTCTTCACCCCAACAATCAGCTAAGCCAGGGCTCTCACGGGGGCACATTAAACTC 160799 Query 66042 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 66100 || | || | || || || ||||| || | ||||||||||||||| || ||| || Sbjct 160798 CAAACACCATTGCTCTCAACACGCTTCATGAACAAATCAGGAATCCAAAGGGC-ATAGAA 160740 Query 66101 TAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 66160 | ||| | | ||| ||||| || ||||| |||||||| | ||| | ||| | | Sbjct 160739 GAGATCACGAGCTCTGACCTCCTCCTTCCCTGTGTTCTTTTTCAAATCTAAAAACTCAAA 160680 Query 66161 AATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCC 66207 |||||| ||||||||||||||||||| ||||| | | ||||||| Sbjct 160679 GATATCAGAATGCCACGGTTCCAAGTAAATGGCAAATGCACCAGGCC 160633 >seq361 Length=596180 Score = 104 bits (114), Expect = 3e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 65412 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 65471 || ||| ||| || || || || || | ||| || || | ||||||||| || || || Sbjct 1365 GACCCTTTATAGGTTTCATAGGGACCGTACTTTTCTGCAAATTCACAACTTGCTTCCAAG 1306 Query 65472 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 65531 ||||| || ||||| ||||| || |||||||| || | || | || || || ||| Sbjct 1305 GCACCATAGTAAATAGTTTCAAATATCTTCTTGTTCAAGTCCCGAGCACCCTCACTGTCA 1246 Query 65532 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 65591 || || | | | | || || | ||| || || ||||||||||||||||| || ||| Sbjct 1245 AAAGGCAACCTCATTAAGATGAAAGTGTCAGCCAACCCTTGAACACCAATACCAATGGGT 1186 Query 65592 CTATGTCTCTTATTAGA 65608 ||||||||| |||| || Sbjct 1185 CTATGTCTCATATTTGA 1169 Score = 89.7 bits (98), Expect = 7e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || || |||||||| || | || |||| ||||||||| || || || ||||| | Sbjct 1711 ACCTGGAATTCTCCTGAGAGGACCCTCCTAGTGTAAATGTTTGATGTGTATGGTTCGATT 1652 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 65292 |||||||| || |||||||||||||| || || || || ||||||||||||| Sbjct 1651 GACTCATTGTTCCCCAAAATTTGAGCTGTAGAAGCTGTGGGCATAGGTGCCA 1600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658099611184640