Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calopteryx_20splendens_20[genbank_20GCA_5F002093875.1_202017-04-14] 8,896 sequences; 1,628,352,544 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq4065 140 4e-28 seq2351 116 5e-21 seq361 104 3e-17 >seq4065 Length=69253 Score = 140 bits (154), Expect = 4e-28 Identities = 166/223 (74%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| |||| | ||| | ||| ||||| || || | || ||||| ||||| | ||||| Sbjct 28146 CCTCATCTCGAGAAATAAGTTCATTGGAGAAGGTCAACCCTGGCATGAGGCCCCTCTTTT 28087 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 |||||||||| ||||| |||||||||||||| || || |||||||| |||| ||||| | Sbjct 28086 TAAGCCAAAAGATGGAAGCAAATGATCCAGAGAAAAATATTCCTTCAACTGAAGCAAACG 28027 Query 32803 CAATAAGTCTCTCTCCATAACCGGCGCTGTCA--TG-TATCCACTTTTGAGCCCAATCGG 32859 ||| || | |||||| | || | ||| || ||||||| | ||||| | || Sbjct 28026 CAACAATGCGTTCTCCAAATGTTGCCTTATCACTTGCAATCCACTGCAGTGCCCAGTGGG 27967 Query 32860 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 32902 | ||||| | |||||||||| |||||| | |||||||| || Sbjct 27966 CTTTCTTGCTCACACAAGGCAATGTCTCCACTGCATTAAACAG 27924 >seq2351 Length=162851 Score = 116 bits (128), Expect = 5e-21 Identities = 117/152 (77%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 63821 ttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCC 63880 ||||||||||| || || ||||| |||||||||||||| ||||| || ||||||||||| Sbjct 147490 TTTTTTGTTTCCTTATGAAGATTAGATACGGCTATTCTCGCGGCAAGTATGGCATAATCT 147431 Query 63881 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 63940 || || | || || ||| |||||| |||| ||||||| | | |||| || || ||| Sbjct 147430 GGGTGCTTCGTTGTCATAGTTGCTGCTGTTTCTGCTGCCAAATTATCCAGCTCAACAGTT 147371 Query 63941 GTTACACCATTATATATTCCTTGGATAACCTT 63972 ||||| ||| ||||| || |||||| || Sbjct 147370 GTTACCCCAGAATATAAACCACTGATAACTTT 147339 Score = 104 bits (114), Expect = 3e-17 Identities = 114/149 (77%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 63071 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATG 63129 || || ||||| || | ||||||||||||||| || ||| || ||||| | | ||| Sbjct 160780 ACACGCTTCATGAACAAATCAGGAATCCAAAGGGC-ATAGAAGAGATCACGAGCTCTGAC 160722 Query 63130 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63189 ||||| || ||||| |||||||| | ||| | ||| | | ||||||||||||||||| Sbjct 160721 CTCCTCCTTCCCTGTGTTCTTTTTCAAATCTAAAAACTCAAAGATATCAGAATGCCACGG 160662 Query 63190 TTCCAAGTATATGGCCATAACTCCAGGCC 63218 ||||||||| ||||| | | ||||||| Sbjct 160661 TTCCAAGTAAATGGCAAATGCACCAGGCC 160633 >seq361 Length=596180 Score = 104 bits (114), Expect = 3e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 62423 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 62482 || ||| ||| || || || || || | ||| || || | ||||||||| || || || Sbjct 1365 GACCCTTTATAGGTTTCATAGGGACCGTACTTTTCTGCAAATTCACAACTTGCTTCCAAG 1306 Query 62483 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCA 62542 ||||| || ||||| ||||| || |||||||| || | || | || || || ||| Sbjct 1305 GCACCATAGTAAATAGTTTCAAATATCTTCTTGTTCAAGTCCCGAGCACCCTCACTGTCA 1246 Query 62543 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 62602 || || | | | | || || | ||| || || ||||||||||||||||| || ||| Sbjct 1245 AAAGGCAACCTCATTAAGATGAAAGTGTCAGCCAACCCTTGAACACCAATACCAATGGGT 1186 Query 62603 CTATGTCTCTTATTAGA 62619 ||||||||| |||| || Sbjct 1185 CTATGTCTCATATTTGA 1169 Score = 89.7 bits (98), Expect = 7e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || || |||||||| || | || |||| ||||||||| || || || ||||| | Sbjct 1711 ACCTGGAATTCTCCTGAGAGGACCCTCCTAGTGTAAATGTTTGATGTGTATGGTTCGATT 1652 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62303 |||||||| || |||||||||||||| || || || || ||||||||||||| Sbjct 1651 GACTCATTGTTCCCCAAAATTTGAGCTGTAGAAGCTGTGGGCATAGGTGCCA 1600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633561540121600