Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calopteryx_20splendens_20[genbank_20GCA_5F002093875.1_202017-04-14] 8,896 sequences; 1,628,352,544 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2870 127 5e-24 seq664 127 5e-24 seq3317 125 2e-23 >seq2870 Length=135571 Score = 127 bits (140), Expect = 5e-24 Identities = 146/196 (74%), Gaps = 3/196 (2%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | |||||||||||||| ||||| || |||||||| ||||| || ||||| Sbjct 19758 AAAATGC---AGATTTTCGTGAAAACGCTCACGGGTAAAACGATTACCCTGGAAGTGGAG 19814 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||| ||||| || || || || ||| ||||||||||| || |||||||| ||||| Sbjct 19815 CCCTCTGACACAATTGAAAATGTGAAAGCCAAGATTCAGGATAAGGAAGGAATTCCTCCA 19874 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || ||||| | ||||| || || || || || | |||||||| | || || | || Sbjct 19875 GATCAGCAGAGGCTTATATTTGCTGGGAAGCAATTGGAAGATGGGCGCACGCTCTCTGAC 19934 Query 178095 TATAACGTCCAAAAAG 178110 || || | ||||||| Sbjct 19935 TACAATATTCAAAAAG 19950 >seq664 Length=484775 Score = 127 bits (140), Expect = 5e-24 Identities = 139/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || || ||||| || |||||||| || || || ||||||| Sbjct 443870 CAGATATTTGTGAAGACGCTGACCGGAAAGACAATCACCCTGGAAGTAGAGCCCTCAGAC 443929 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| ||| |||||||||||||| || || || || || |||||||| Sbjct 443930 ACCATTGAGAACGTGAAAGCCAAGATTCAGGACAAGGAGGGGATTCCCCCTGACCAGCAG 443989 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || ||||| ||| | || ||||| | ||||| ||||||| ||| | Sbjct 443990 CGTTTGATTTTTGCTGGAAAGCAGTTAGAGGATGGTCGTACTCTATCCGATTACAACATT 444049 Query 178104 CAAAA 178108 || || Sbjct 444050 CAGAA 444054 Score = 104 bits (114), Expect = 6e-17 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||| | || || || || || || | || || || ||||| Sbjct 440761 CAGATCTTCGTCAAGACTTTGACTGGGAAGACCATAACTTTAGAAGTAGAGCCTTCAGAT 440820 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| |||||||||||||| || |||||||| || ||||| || Sbjct 440821 ACGATAGAAAATGTCAAGGCCAAGATTCAGGACAAGGAGGGAATCCCACCTGACCAACAG 440880 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || ||||| |||||||||||||| | || ||| ||||||| || | Sbjct 440881 CGGTTGATTTTTGCTGGAAAGCAGCTCGAAGATGGCCGAACGCTTTCCGATTACAATATT 440940 Query 178104 CAAAAAG 178110 || |||| Sbjct 440941 CAGAAAG 440947 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || ||||| ||||| || || ||||| || || || ||||||| Sbjct 443526 CAGATATTTGTGAAGACCCTCACCGGAAAGACCATAACCCTGGAAGTTGAGCCCTCAGAC 443585 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 ||||| |||||||| ||| |||||||||||||| ||||| Sbjct 443586 ACCATTGAGAACGTGAAAGCCAAGATTCAGGACAAGGAAGG 443626 >seq3317 Length=93551 Score = 125 bits (138), Expect = 2e-23 Identities = 140/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| ||| | || ||||| || || || || || |||||| || ||| Sbjct 55858 CAGATCTTCGTGAAGACTTTGACGGGAAAGACTATTACGCTTGAAGTGGAAGCGTCTGAC 55799 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||| || |||||||| ||||| ||||| || |||||||| Sbjct 55798 ACAATAGAAAATGTGAAGGCAAAAATACAGGACAAGGAAGGCATCCCGCCTGACCAGCAG 55739 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||||||||| ||| | |||||||| ||||| || | |||||||| | Sbjct 55738 AGATTGATTTTCGCCGGAAAGCAGTTGGAAGATGGCAGGACCCTATCTGATTATAATATT 55679 Query 178104 CAAAAAG 178110 || |||| Sbjct 55678 CAGAAAG 55672 Score = 91.5 bits (100), Expect = 4e-13 Identities = 138/196 (70%), Gaps = 3/196 (2%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||| || ||||||||||| |||||||| || || || | || || ||| Sbjct 67181 AAAATGC---AAATCTTTGTGAAAACTCTGACAGGAAAGACAATTACTTTAGAAGTCGAA 67125 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || ||||| || || || || || || ||||| || |||||||| || ||||| Sbjct 67124 TCATCTGACACAATTGAAAATGTTAAGGCTAAAATTCAAGATAAAGAAGGTATTCCTCCC 67065 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || || ||||| | || || || ||||| || | || ||| | ||| | ||||| Sbjct 67064 GATCAACAACGCTTAATTTTTGCTGGAAAGCAATTAGAGGATAATCGAACTTTGTCCGAT 67005 Query 178095 TATAACGTCCAAAAAG 178110 || ||| | || |||| Sbjct 67004 TACAACATACAGAAAG 66989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203593998717824