Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21]
60,049 sequences; 728,788,927 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq18227 515 5e-141
seq33365 123 3e-23
>seq18227
Length=276284
Score = 515 bits (570), Expect = 5e-141
Identities = 1209/1810 (67%), Gaps = 46/1810 (3%)
Strand=Plus/Minus
Query 52786 TTTTATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAG 52845
||| ||||| ||||| | |||||| ||||| | || || ||||| || | ||
Sbjct 241839 TTTAATTTTGGATTTGTCAACTGTGAACTGAATAGCGTTGGCGGCAGGTTTGGTTCTTAA 241780
Query 52846 ATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTT 52905
|||||||||||| || || || || | |||| | || ||||| || ||||||||
Sbjct 241779 ATAGTACATTCCAGTCTTGAGCCCAATTTTCCAGGCATAGAAATGAATTGAAGTTAGTTT 241720
Query 52906 GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCC 52965
||| | || ||||||| ||||||||| | ||||||||| || || || || |||||
Sbjct 241719 CCCGTAATTAGGTTCTGCTACATGGATATTGAAAGATTGACTCTGGTCAATAAATGCTCC 241660
Query 52966 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AA 53024
|| || |||||||||| || | ||||| | ||| ||||| | |||||| || ||
Sbjct 241659 TCTATCCGCAGCCATTTGAATAGTGGTCTTAACGGAAATCTCCCACACAGTTTTGTACAA 241600
Query 53025 CTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATAGATCCACCATCTACCATAA 53081
|| || ||| |||| || | ||| |||| || ||||| ||| | ||||
Sbjct 241599 ATCTCT-AATTTCTTGGGGTATATTTTCAATATTTTGGATAGAACCATTGTTATGAATAA 241541
Query 53082 TCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCG 53141
| |||||| || || || | ||| || | | || ||| | || || | |||
Sbjct 241540 TGACATTCTTCATGTCTTCGTCCCACAAGTCAGCTTGAGTCAAATCCCTGAGTAAATGAT 241481
Query 53142 GATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACG 53201
|||| || |||||||||||||||||||| ||||| | |||||| || ||| | |
Sbjct 241480 GATTCACCACTTGAAATTCTCCAGACAACACTCTTCTTTGGTAAATGTTTGATGTAAATG 241421
Query 53202 GTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 53261
|||| | || ||||| ||||| | ||| || || || || ||||| ||||| || || |
Sbjct 241420 GTTCAAATGATTCATTGTTTCCGAGAATCTGTGCTGTAGAAGCAGTTGGCATTGGAGCTA 241361
Query 53262 CCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATT 53319
||| | ||| | ||| || ||| | || ||||||||||| || | ||| ||
Sbjct 241360 GCAAAAGTGAATTGCGAAGGCC--ATGCTTTGCAATTTTATCTTTGAGCTCTGTCCAGTT 241303
Query 53320 CCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GT 53378
||||||||| | ||| ||| || ||||| | |||||| |
Sbjct 241302 CCAAAGATCTGTAGGTGTTTTGTTCCACATGTCGTATTGAAGTATACCTTGACTGGCTGG 241243
Query 53379 ACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTA 53438
|| |||| | || ||| |||| ||||| || || |||||||||||||| || || |
Sbjct 241242 ACT-TCCTTCGTAAGTACTGTATACACCTTCTTTTTCTGCTAGTTCACAACTTGCTTCCA 241184
Query 53439 ATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGT-GCTTCCAGGCTA 53497
|| || || |||||||||||||| |||| | ||| | || | | |||| | ||
Sbjct 241183 GAGCTCCATAGTAAATGGTTTCGAATATCTGTTGATTCA-ATAATATCGCTTTCTCACTT 241125
Query 53498 TCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATA 53557
||| | || | | || | ||| | ||| || | ||| |||||||||||||| |||
Sbjct 241124 TCATAGGGCAGTCTCATTAGGACAAATGTGTCGGCCAGTCCCTGAACACCAATACCAATA 241065
Query 53558 GGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATA 53617
|| || |||||| |||| || | | ||||||||| | ||||| | || | ||| |||
Sbjct 241064 GGCCTGTGTCTCATATTCGAATTCTTAGCTTCTGGTACTGGATAGAAGTTCACATCAATA 241005
Query 53618 ATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTT-GAGAAAATCAAA 53676
||||| || | ||| || ||||| | || || | ||| | |||| | ||
Sbjct 241004 ATTTTGTTTAAATTTTGTGTGATGACTTTTGATATTTCTTTTAATTTTGTGAAATTATAA 240945
Query 53677 ---TTGTCCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTAC 53733
||||| || |||||||||| ||||| || || || || | |||||| || || ||
Sbjct 240944 GTTTTGTCT-TCGTTTACAAACATATTCAAAGCTATTGAAGCTAAATTACATACAGCCAC 240886
Query 53734 CTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCC 53793
|||| || | |||| | || ||||| || ||||| || || || || |||||
Sbjct 240885 TTCATCTTCAGAAGTGTATTCAACAATTTCAGTACAGAGATTGCTGCATTTAATCGTTCC 240826
Query 53794 TAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACC 53853
|||||||| |||||| || || |||| || | || || || | ||| |||| || ||
Sbjct 240825 TAAATTTTTTTGATTGCTTTTCCTGTTGCAGGAGTCTTTGTATAACATGTATGGTGTTCC 240766
Query 53854 AGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGA------CACGAGCCTTTATTAT 53907
||| || | |||| ||||||||| |||||||| | | ||||| | | | | |
Sbjct 240765 AGTCTCTACTTGGGCTTCTATAATAGCTTTCCATAATACTTGAGCACGAACTTGTCTAAC 240706
Query 53908 AGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCA 53967
| | || | |||| | |||| ||| | ||| || |||||||| ||||||||
Sbjct 240705 ATAATTAT-TCTCCT-----TTTCATATTTTTCATATAAGGCCTCAAACTCTTCTCCCCA 240652
Query 53968 AACATTGTC---CAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATC 54024
|||| | ||| || || | || || |||||||| ||| | ||| | | |
Sbjct 240651 ---GGTGTCAGTTAGTCCGGGGCAATTATGAGGGCACATCAAGCTCCAGTTTCCATTA-C 240596
Query 54025 CTTC-ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTC 54083
||| |||| |||||| || | |||||| ||||| | || ||| | || || | |
Sbjct 240595 TTTCAACTCTTTTCATGAATAAATCAGGTATCCACAAGGCATAAAACAATTCCCTAGCAC 240536
Query 54084 TATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCC 54143
| |||||| || || ||||||||||| ||||| || ||| | | ||||| | |||||
Sbjct 240535 GAACTTCCTCTTTGCCAGTATTCTTTTTCAGATCCAGAAACTCAAATATATCCGCATGCC 240476
Query 54144 ACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATC 54203
||||||| ||||||| | | | || |||| || |||||||| ||||| | ||||
Sbjct 240475 ACGGTTCTAAGTATACTGCAAATGCACCTGGCCTCTTATTTCCTCCTTGATCGACATATC 240416
Query 54204 TAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCC 54263
|||| ||||||||||| ||||| | ||| || | | |||||| || ||||||| || |
Sbjct 240415 TAGCTGTGTTATTATACACTCTGAGCATGGGTACTAGACCATTCGAAACACCATTTGTTC 240356
Query 54264 CGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA----TAGACCTATCCCCCCT 54319
| | ||| | || | || | ||| ||| || | || ||||| ||
Sbjct 240355 CAGCAATAGTTGTGCCTTTTGCTCTAAT----GCAATGGACATGCAATCCAATCCCACCA 240300
Query 54320 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCA 54379
|| ||| || || || || ||| | || | |||||||| || |||||||| || |||
Sbjct 240299 GCAGATTTTGATATCAAGGCACATTGCTTAAGAGTATCATATATTCCCTCTATGCTGTCA 240240
Query 54380 TCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAAT 54439
|| ||||| | || ||| || || | ||| | ||| | || ||
Sbjct 240239 TCTTTCATGGCTATTAAAAAGCATGATGATAATTGAGGTTTGGGAGTGGCAGCTGAGAAG 240180
Query 54440 AAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCT 54499
| || || || || ||||| |||||||||| |||| ||| || || | |||||||
Sbjct 240179 AGAGTTGGGCTGGCATGAGTAAAATATTTTTCAGACAGTAAATTATAAGTGTTGATAGCT 240120
Query 54500 GAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTT 54559
| || |||||| ||| ||||| | || |||||||| | ||||||||| || ||
Sbjct 240119 GCATCGATATCCTCCCCATGTATTCCAATTGAAACACGCATAAGCATGTGCTGTGGCCTC 240060
Query 54560 TCAACGATCT 54569
|| | ||||
Sbjct 240059 TCTGCTATCT 240050
>seq33365
Length=5281
Score = 123 bits (136), Expect = 3e-23
Identities = 143/193 (74%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454
|||| | | |||||| || ||||| | | |||||| || || |||| || || |||||
Sbjct 4383 ATCTCTGATATATGTGTCTATCAACAAAGAATACATCTCAGAGTGAACATTCTCCATGGC 4442
Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC 24514
||||||||||| ||||||||||| || || || | || |||||| | || | ||
Sbjct 4443 AATTTGAAATCCATAGAAACATCTGGCTTCAGTGACTTGCACTTCTTGGGAGAACCTCTC 4502
Query 24515 TGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 24574
| | ||||||||| ||||| || ||| ||| ||||| || ||||| ||||| |||||
Sbjct 4503 CACAAGATTTTCATTGACTATCCCATCAGAGGCAGCAAAGAAGGCCAAGACATGCTTTAT 4562
Query 24575 AAAATATTTTTCG 24587
||||| |||||
Sbjct 4563 AAAATGCCTTTCG 4575
Score = 116 bits (128), Expect = 4e-21
Identities = 163/228 (71%), Gaps = 3/228 (1%)
Strand=Plus/Plus
Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216
|||| |||| ||||||||| || || || | ||| ||||||||||| ||||| |
Sbjct 3539 CCTCATCTCGTGAAATTAATTCATTACTGAATGTCAATCCAGGCATTAGGCCGCGCTTCT 3598
Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276
| | ||| ||||| || ||||| ||||||||||| ||||| || || || ||||| |
Sbjct 3599 TCAACCAGAATATTGATGCAAAACTGCCAGAAAAGAATATTCCCTCAACAGCTGCAAATG 3658
Query 24277 CAATAAGTCTTTCTCCATAACCGGCGC---TGTCATGTATCCACTTTTGAGCCCAATCGG 24333
| | || | |||||| || || | || | ||||||| |||||||||| |
Sbjct 3659 CCACAATACGCTCTCCAAAAGTTGCACTCTTGCTAGCAATCCACTGCAGAGCCCAATCTG 3718
Query 24334 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGT 24381
||||| | ||||| || |||| || || ||||||||||| | | |||
Sbjct 3719 CCTTCCTCTTTACGCATGGCAGAGTTTCAATAGCATTAAACAAAAAGT 3766
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593275945145520
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