Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq18227 515 5e-141 seq33365 123 3e-23 >seq18227 Length=276284 Score = 515 bits (570), Expect = 5e-141 Identities = 1209/1810 (67%), Gaps = 46/1810 (3%) Strand=Plus/Minus Query 52786 TTTTATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAG 52845 ||| ||||| ||||| | |||||| ||||| | || || ||||| || | || Sbjct 241839 TTTAATTTTGGATTTGTCAACTGTGAACTGAATAGCGTTGGCGGCAGGTTTGGTTCTTAA 241780 Query 52846 ATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTT 52905 |||||||||||| || || || || | |||| | || ||||| || |||||||| Sbjct 241779 ATAGTACATTCCAGTCTTGAGCCCAATTTTCCAGGCATAGAAATGAATTGAAGTTAGTTT 241720 Query 52906 GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCC 52965 ||| | || ||||||| ||||||||| | ||||||||| || || || || ||||| Sbjct 241719 CCCGTAATTAGGTTCTGCTACATGGATATTGAAAGATTGACTCTGGTCAATAAATGCTCC 241660 Query 52966 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AA 53024 || || |||||||||| || | ||||| | ||| ||||| | |||||| || || Sbjct 241659 TCTATCCGCAGCCATTTGAATAGTGGTCTTAACGGAAATCTCCCACACAGTTTTGTACAA 241600 Query 53025 CTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATAGATCCACCATCTACCATAA 53081 || || ||| |||| || | ||| |||| || ||||| ||| | |||| Sbjct 241599 ATCTCT-AATTTCTTGGGGTATATTTTCAATATTTTGGATAGAACCATTGTTATGAATAA 241541 Query 53082 TCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCG 53141 | |||||| || || || | ||| || | | || ||| | || || | ||| Sbjct 241540 TGACATTCTTCATGTCTTCGTCCCACAAGTCAGCTTGAGTCAAATCCCTGAGTAAATGAT 241481 Query 53142 GATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACG 53201 |||| || |||||||||||||||||||| ||||| | |||||| || ||| | | Sbjct 241480 GATTCACCACTTGAAATTCTCCAGACAACACTCTTCTTTGGTAAATGTTTGATGTAAATG 241421 Query 53202 GTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 53261 |||| | || ||||| ||||| | ||| || || || || ||||| ||||| || || | Sbjct 241420 GTTCAAATGATTCATTGTTTCCGAGAATCTGTGCTGTAGAAGCAGTTGGCATTGGAGCTA 241361 Query 53262 CCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATT 53319 ||| | ||| | ||| || ||| | || ||||||||||| || | ||| || Sbjct 241360 GCAAAAGTGAATTGCGAAGGCC--ATGCTTTGCAATTTTATCTTTGAGCTCTGTCCAGTT 241303 Query 53320 CCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GT 53378 ||||||||| | ||| ||| || ||||| | |||||| | Sbjct 241302 CCAAAGATCTGTAGGTGTTTTGTTCCACATGTCGTATTGAAGTATACCTTGACTGGCTGG 241243 Query 53379 ACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTA 53438 || |||| | || ||| |||| ||||| || || |||||||||||||| || || | Sbjct 241242 ACT-TCCTTCGTAAGTACTGTATACACCTTCTTTTTCTGCTAGTTCACAACTTGCTTCCA 241184 Query 53439 ATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGT-GCTTCCAGGCTA 53497 || || || |||||||||||||| |||| | ||| | || | | |||| | || Sbjct 241183 GAGCTCCATAGTAAATGGTTTCGAATATCTGTTGATTCA-ATAATATCGCTTTCTCACTT 241125 Query 53498 TCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATA 53557 ||| | || | | || | ||| | ||| || | ||| |||||||||||||| ||| Sbjct 241124 TCATAGGGCAGTCTCATTAGGACAAATGTGTCGGCCAGTCCCTGAACACCAATACCAATA 241065 Query 53558 GGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATA 53617 || || |||||| |||| || | | ||||||||| | ||||| | || | ||| ||| Sbjct 241064 GGCCTGTGTCTCATATTCGAATTCTTAGCTTCTGGTACTGGATAGAAGTTCACATCAATA 241005 Query 53618 ATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTT-GAGAAAATCAAA 53676 ||||| || | ||| || ||||| | || || | ||| | |||| | || Sbjct 241004 ATTTTGTTTAAATTTTGTGTGATGACTTTTGATATTTCTTTTAATTTTGTGAAATTATAA 240945 Query 53677 ---TTGTCCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTAC 53733 ||||| || |||||||||| ||||| || || || || | |||||| || || || Sbjct 240944 GTTTTGTCT-TCGTTTACAAACATATTCAAAGCTATTGAAGCTAAATTACATACAGCCAC 240886 Query 53734 CTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCC 53793 |||| || | |||| | || ||||| || ||||| || || || || ||||| Sbjct 240885 TTCATCTTCAGAAGTGTATTCAACAATTTCAGTACAGAGATTGCTGCATTTAATCGTTCC 240826 Query 53794 TAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACC 53853 |||||||| |||||| || || |||| || | || || || | ||| |||| || || Sbjct 240825 TAAATTTTTTTGATTGCTTTTCCTGTTGCAGGAGTCTTTGTATAACATGTATGGTGTTCC 240766 Query 53854 AGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGA------CACGAGCCTTTATTAT 53907 ||| || | |||| ||||||||| |||||||| | | ||||| | | | | | Sbjct 240765 AGTCTCTACTTGGGCTTCTATAATAGCTTTCCATAATACTTGAGCACGAACTTGTCTAAC 240706 Query 53908 AGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCA 53967 | | || | |||| | |||| ||| | ||| || |||||||| |||||||| Sbjct 240705 ATAATTAT-TCTCCT-----TTTCATATTTTTCATATAAGGCCTCAAACTCTTCTCCCCA 240652 Query 53968 AACATTGTC---CAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATC 54024 |||| | ||| || || | || || |||||||| ||| | ||| | | | Sbjct 240651 ---GGTGTCAGTTAGTCCGGGGCAATTATGAGGGCACATCAAGCTCCAGTTTCCATTA-C 240596 Query 54025 CTTC-ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTC 54083 ||| |||| |||||| || | |||||| ||||| | || ||| | || || | | Sbjct 240595 TTTCAACTCTTTTCATGAATAAATCAGGTATCCACAAGGCATAAAACAATTCCCTAGCAC 240536 Query 54084 TATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCC 54143 | |||||| || || ||||||||||| ||||| || ||| | | ||||| | ||||| Sbjct 240535 GAACTTCCTCTTTGCCAGTATTCTTTTTCAGATCCAGAAACTCAAATATATCCGCATGCC 240476 Query 54144 ACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATC 54203 ||||||| ||||||| | | | || |||| || |||||||| ||||| | |||| Sbjct 240475 ACGGTTCTAAGTATACTGCAAATGCACCTGGCCTCTTATTTCCTCCTTGATCGACATATC 240416 Query 54204 TAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCC 54263 |||| ||||||||||| ||||| | ||| || | | |||||| || ||||||| || | Sbjct 240415 TAGCTGTGTTATTATACACTCTGAGCATGGGTACTAGACCATTCGAAACACCATTTGTTC 240356 Query 54264 CGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA----TAGACCTATCCCCCCT 54319 | | ||| | || | || | ||| ||| || | || ||||| || Sbjct 240355 CAGCAATAGTTGTGCCTTTTGCTCTAAT----GCAATGGACATGCAATCCAATCCCACCA 240300 Query 54320 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCA 54379 || ||| || || || || ||| | || | |||||||| || |||||||| || ||| Sbjct 240299 GCAGATTTTGATATCAAGGCACATTGCTTAAGAGTATCATATATTCCCTCTATGCTGTCA 240240 Query 54380 TCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAAT 54439 || ||||| | || ||| || || | ||| | ||| | || || Sbjct 240239 TCTTTCATGGCTATTAAAAAGCATGATGATAATTGAGGTTTGGGAGTGGCAGCTGAGAAG 240180 Query 54440 AAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCT 54499 | || || || || ||||| |||||||||| |||| ||| || || | ||||||| Sbjct 240179 AGAGTTGGGCTGGCATGAGTAAAATATTTTTCAGACAGTAAATTATAAGTGTTGATAGCT 240120 Query 54500 GAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTT 54559 | || |||||| ||| ||||| | || |||||||| | ||||||||| || || Sbjct 240119 GCATCGATATCCTCCCCATGTATTCCAATTGAAACACGCATAAGCATGTGCTGTGGCCTC 240060 Query 54560 TCAACGATCT 54569 || | |||| Sbjct 240059 TCTGCTATCT 240050 >seq33365 Length=5281 Score = 123 bits (136), Expect = 3e-23 Identities = 143/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||| | | |||||| || ||||| | | |||||| || || |||| || || ||||| Sbjct 4383 ATCTCTGATATATGTGTCTATCAACAAAGAATACATCTCAGAGTGAACATTCTCCATGGC 4442 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC 24514 ||||||||||| ||||||||||| || || || | || |||||| | || | || Sbjct 4443 AATTTGAAATCCATAGAAACATCTGGCTTCAGTGACTTGCACTTCTTGGGAGAACCTCTC 4502 Query 24515 TGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 24574 | | ||||||||| ||||| || ||| ||| ||||| || ||||| ||||| ||||| Sbjct 4503 CACAAGATTTTCATTGACTATCCCATCAGAGGCAGCAAAGAAGGCCAAGACATGCTTTAT 4562 Query 24575 AAAATATTTTTCG 24587 ||||| ||||| Sbjct 4563 AAAATGCCTTTCG 4575 Score = 116 bits (128), Expect = 4e-21 Identities = 163/228 (71%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| |||| ||||||||| || || || | ||| ||||||||||| ||||| | Sbjct 3539 CCTCATCTCGTGAAATTAATTCATTACTGAATGTCAATCCAGGCATTAGGCCGCGCTTCT 3598 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | | ||| ||||| || ||||| ||||||||||| ||||| || || || ||||| | Sbjct 3599 TCAACCAGAATATTGATGCAAAACTGCCAGAAAAGAATATTCCCTCAACAGCTGCAAATG 3658 Query 24277 CAATAAGTCTTTCTCCATAACCGGCGC---TGTCATGTATCCACTTTTGAGCCCAATCGG 24333 | | || | |||||| || || | || | ||||||| |||||||||| | Sbjct 3659 CCACAATACGCTCTCCAAAAGTTGCACTCTTGCTAGCAATCCACTGCAGAGCCCAATCTG 3718 Query 24334 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGT 24381 ||||| | ||||| || |||| || || ||||||||||| | | ||| Sbjct 3719 CCTTCCTCTTTACGCATGGCAGAGTTTCAATAGCATTAAACAAAAAGT 3766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593275945145520