Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq49719 248 7e-61 seq17913 113 4e-20 seq42682 102 7e-17 seq11948 96.9 3e-15 >seq49719 Length=92225 Score = 248 bits (274), Expect = 7e-61 Identities = 515/756 (68%), Gaps = 17/756 (2%) Strand=Plus/Minus Query 102287 GGCGCGTACAGCGTGGTCTGGTAGCCCAAATCCGT-GTTGGACCACGCGCCCTTAAAATC 102345 || |||||||| | ||| |||| | || | || ||||||||| || ||||| || || Sbjct 80735 GGAGCGTACAGTGGGGTTTGGT-GACCGAGGGTGTCGTTGGACCAGGCTCCCTTGAAGTC 80677 Query 102346 GTAACTCATGAGGAATATTTTATCAAGGAACCTTTGAGCCGCGTCGTACTTCACCACGGC 102405 ||| ||||| ||||| || | || | | | | || ||| || ||| | | || Sbjct 80676 GTAGCTCATCAGGAAGATGTGGTCCATGTAGTTCTGCGCCTTGTTGTAGTCGATTACCTG 80617 Query 102406 AATTTTGTCGTAGCCCGAACTAATCGCGCTCGTCAGCTCGTACGTCTTGTTCGTTTGCAG 102465 || ||||| | || | |||||| ||| ||||||||||| || | | || | | | Sbjct 80616 GATCTTGTCCCATCCAGCACTAATAGCGGATGTCAGCTCGTATTTCCT-TCCGGTCTCGG 80558 Query 102466 CTGC-AGTTCGTCCAGCATGGCGCGCAACTCTTTCAGCAAAACAAGGTACGTGTCGGCGT 102524 | | ||||||| |||||| | || | |||||||| || | |||| ||| ||| Sbjct 80557 CGCCCAGTTCGTTCAGCATTTCACGAAGCTCTTTCATCAGTGTGACGTACACTTCGCCGT 80498 Query 102525 CGCGCTCGCCGTTGCCGAGCGCCGGGTTGGCGCCCTTGCCGCCCGGAAACTCCCAATCGA 102584 | ||| ||||| |||||||| || || || || || ||||||||||||| Sbjct 80497 CTTTAGGGCCA---CCGAGGTGAGGGTTGGCACCTTTACCACCAGGGAACTCCCAATCGA 80441 Query 102585 TGTCCACCCCGTCGAAAAACTTCCACACCTGCAAAAACTCTTTAACGGATTCGACAAACA 102644 | || || |||||||| |||||||| ||||| || ||||| || || ||||||| Sbjct 80440 TATCAACACCGTCGAAGAACTTCCATGTCTGCAGGAAGTCTTTTACTGAAGCGACAAA-- 80383 Query 102645 CGCG-CCGCTTGT--CCGCGTCGTGCATGAAATAGAACGGGTCGGACAGCGTCCAGCCGC 102701 ||| | ||| | || || | | ||| ||||||| |||| | |||||||| | Sbjct 80382 -GCGATCTCTTTTAACCTTATCATCAAAGAAGAAGAACGGATCGGCTAAGGTCCAGCCAC 80324 Query 102702 CAATGGACGGCAGGATTTTCAAATGCGGGTTTGCCAGCTTGGCCGCCATCAACTGGCCAA 102761 | | ||| ||||| || || || | || | ||| | || | ||||| ||| |||| Sbjct 80323 CGACGGAAGGCAGAATCTTTAAGTCGGGCCTGGCCTGTTTTAGAGACATCAGCTGACCAA 80264 Query 102762 AGTTGCCTTTGTAGGGCTCGTTCCATGCGGATACGCCCTTTTGCGGCTTTTGTATGGCGG 102821 |||| || ||||| || || ||||| || | ||||| || ||||| || | ||| | Sbjct 80263 AGTTACCCTTGTAAGGTTCATTCCAACTAGACAGACCCTTCTGTGGCTTCTGCAGGGCTG 80204 Query 102822 CCCACGGGTCGTGGATAGCGACCTTAAAGTCTGCGCGGCCTTTGCACGAGCGCTGCAGCG 102881 |||| ||||| || |||| ||||| ||||| |||| || |||| || || |||| || Sbjct 80203 CCCATGGGTCATGAATAGACACCTTGAAGTCCTCGCGACCACTGCAAGACCGTTGCAACG 80144 Query 102882 CTTCAAAACTGCCGGGAATGGTCTTGAGCGCGTCGTTTAGCCCGTCGCCGCCGCAAATCG 102941 | |||| || || || ||| | |||||| | || || || || ||||| | Sbjct 80143 CGGCAAAGCTTCCATCGATTTCCTTCAAACTGTCGTTGATACCATCACCACCACAAATAG 80084 Query 102942 GGATGAAGCCGTACAGCAGATGGGACAGGTTGGGCAGCGGCACTTTGTCCACCGGAAA-- 102999 | ||||| |||||||| ||||| ||||||||||||| || | || || || || || Sbjct 80083 GAATGAAACCGTACAGAAGATGAGACAGGTTGGGCACTGGAATCTTATCAACTGGGAATT 80024 Query 103000 GCCGCGGCCGTACACGCCCCACTCTACGAAATACGC 103035 || ||| || || |||||||| ||||| || || Sbjct 80023 TCCTCGG--ATAGACTCCCCACTCGACGAAGTATGC 79990 >seq17913 Length=240356 Score = 113 bits (124), Expect = 4e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| ||| | || ||||||||||||||||| ||||| | || || | | || Sbjct 96475 AGTACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCTGAAAGTGTGCGTCCATCT 96416 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| ||||| || | ||||||| ||||||||| ||| | ||||||||| || Sbjct 96415 TCAAGCTGCTTGCCAGCGAAGATAAGTCGCTGCTGGTCTGGGGGAATGCCTTCCTTATCT 96356 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||| ||| ||||| | | | |||||| ||| ||| || | |||||||| Sbjct 96355 TGGATTTTTGCCTTCACATTTTCAATTGTATCAGAGGGTTCCACCTCTAATGTAATGGTT 96296 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 || ||||| | || || |||||||| ||||| |||| Sbjct 96295 TTTCCGGTGAGTGTCTTAACAAATATCTGCATGTTGA 96259 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| ||| | || ||||||||||||||||| ||||| | || ||| | | || Sbjct 96703 AGTACCAAATGTAGGGTCGACTCCTTTTGAATGTTGTAGTCTGATAGTGTTCGTCCATCT 96644 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| ||||| || | ||||||| ||||||||| ||| | |||||| ||||| Sbjct 96643 TCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGGGGAATGCCTTCTTTGTCC 96584 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||| || ||| || | ||| || || ||| || |||| || ||||| Sbjct 96583 TGGATTTTAGCTTTGACATTTTCGATTGTGTCTGAGGGTTCAACCTCCAGTGTGATGGTT 96524 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || || ||||| || || |||||||| Sbjct 96523 TTGCCAGTCAAGGTTTTTACGAAAATTTGCAT 96492 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| ||| | || ||||||||||| ||||| ||||| | || || | | || Sbjct 97387 AGTACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCTGAAAGTGTGCGTCCATCT 97328 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| ||||| || | ||||||| ||||||||| ||| | |||||| ||||| Sbjct 97327 TCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGGGGAATGCCTTCTTTGTCC 97268 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||| || ||| || | ||| || ||| |||||| || | || ||||| Sbjct 97267 TGGATTTTAGCTTTGACATTTTCGATTGTGTCAGAGGGCTCAACCTCGAGCGTGATGGTT 97208 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || || ||||| || || || ||||| Sbjct 97207 TTGCCAGTCAAGGTTTTTACGAAAATCTGCAT 97176 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| ||| | || ||||||||||| ||||| ||||| | || || | | || Sbjct 96931 AGTACCAAATGTAGGGTCGACTCCTTTTGGATGTTGTAGTCTGAAAGTGTGCGTCCATCT 96872 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| ||||| || | ||||||| ||||||||| || | |||||| ||||| Sbjct 96871 TCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCC 96812 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||| ||| ||| || | | | |||||| ||| || || | || ||||| Sbjct 96811 TGGATTTTTGCTTTGACATTTTCAATTGTATCAGAGGGTTCAACCTCGAGTGTGATGGTT 96752 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || || ||||| || || || ||||| Sbjct 96751 TTGCCAGTCAAGGTTTTTACGAAAATCTGCAT 96720 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| ||| | || ||||||||||| ||||| ||||| | || || | | || Sbjct 97159 AGTACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCTGAAAGTGTGCGTCCATCT 97100 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| ||||| || | ||||||| ||||||||| ||| | |||||| ||||| Sbjct 97099 TCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGGGGAATGCCTTCTTTGTCT 97040 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||| || ||| || | ||| || ||| ||| || || | || ||||| Sbjct 97039 TGGATTTTCGCTTTGACATTTTCGATTGTGTCAGAGGGTTCAACCTCGAGTGTGATGGTT 96980 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || || ||||| || || || ||||| Sbjct 96979 TTGCCAGTCAAGGTTTTTACGAAAATCTGCAT 96948 >seq42682 Length=462070 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 20972 ATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTG 21031 ||||| ||| |||||||| ||||||||||| || | |||||| | || |||||||| Sbjct 303883 ATGCAGAGTAGACTCCTTCTGAATGTTATAATCAGAAAGGGTTCTTCCATCTTCCAGCTG 303824 Query 21032 TTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTT 21091 ||||| ||| ||||||| | ||| ||||| ||| | |||||||||||| || || Sbjct 303823 CTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGGGGGATGCCTTCCTTGTCCTGAATTTT 303764 Query 21092 TTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGT 21151 ||||| | | | |||||| | ||| |||| || || || || || || Sbjct 303763 AGCCTTCACATTTTCAATAGTATCTGAAGCCTCTACCTCCAAAGTTATAGTTTTACCAGT 303704 Query 21152 TAACGTTTTGACAAATATTTGCAT 21175 | ||||||||||| |||||||| Sbjct 303703 CAGTGTTTTGACAAAGATTTGCAT 303680 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 20972 ATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTG 21031 ||| | ||| |||||||| || |||||||| || | || ||| | || |||||||| Sbjct 300936 ATGTAGAGTAGACTCCTTCTGTATGTTATAATCAGATAGAGTTCTTCCATCTTCCAGCTG 300877 Query 21032 TTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTT 21091 ||||| ||| | || || | ||||||||| ||| | |||||||||||| || || Sbjct 300876 CTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGAATTTT 300817 Query 21092 TTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGT 21151 |||||| | | | ||| || | ||| |||| |||||| || || || || Sbjct 300816 AGCTTTCACATTTTCAATAGTGTCTGAAGCCTCTACCTCCAAGGTAATTGTTTTTCCAGT 300757 Query 21152 TAACGTTTTGACAAATATTTGCATTTTGA 21180 | || ||||| || |||||||| |||| Sbjct 300756 GAGAGTCTTGACGAAAATTTGCATCTTGA 300728 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 20972 ATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTG 21031 ||| | ||| |||||||| || |||||||| || | || ||| | || |||||||| Sbjct 301831 ATGTAGAGTAGACTCCTTCTGTATGTTATAATCAGATAGAGTTCTTCCATCTTCCAGCTG 301772 Query 21032 TTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTT 21091 ||||| ||| | || || | ||||||||| ||| | |||||||||||| || || Sbjct 301771 CTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGAATTTT 301712 Query 21092 TTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGT 21151 ||||| | | | |||||| | ||| |||| || || || || || || Sbjct 301711 AGCCTTCACATTTTCAATAGTATCTGAAGCCTCTACCTCCAAAGTTATAGTTTTACCAGT 301652 Query 21152 TAACGTTTTGACAAATATTTGCAT 21175 || ||||||||||| |||||||| Sbjct 301651 TAGTGTTTTGACAAAGATTTGCAT 301628 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || || | ||||| ||||| ||||| || |||||||| || | ||||| | || Sbjct 302523 AGAACTAAATGCAGGGTGGATTCCTTCTGGATGTTATAATCGGAAAGGGTCCTTCCATCT 302464 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || | ||| ||||| || | ||||||||| || Sbjct 302463 TCCAGCTGCTTGCCAGCAAAGATGAGACGCTGTTGGTCTGGAGGGATGCCTTCCTTATCC 302404 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 || || ||| || | | | ||| || || || ||| | ||||||||| Sbjct 302403 TGAATTTTAGCTTTAACATTCTCAATAGTGTCGGAAGGTTCTACTTCTAAGGTAATGGTT 302344 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||| | ||||||||||| || ||||| Sbjct 302343 TTGCCGGTCAGAGTTTTGACAAAAATCTGCAT 302312 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || || | ||||| ||| || ||||| || ||||| ||||| | || ||| | || Sbjct 304119 AGAACTAAATGCAGAGTAGATTCCTTCTGGATGTTGTAGTCAGATAGTGTTCTTCCATCT 304060 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || | ||| ||||| || | ||||||||| || Sbjct 304059 TCCAGCTGCTTGCCAGCAAATATGAGACGCTGTTGGTCTGGAGGGATGCCTTCCTTATCC 304000 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 || || ||| || | | | ||| || || || ||||| ||| ||||| Sbjct 303999 TGAATTTTAGCTTTAACATTCTCAATAGTGTCGGAAGGTTCTACTTCCAAGGTGATGGTT 303940 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || || ||||||||||| || ||||| Sbjct 303939 TTGCCTGTCAAAGTTTTGACAAAGATCTGCAT 303908 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20946 TTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCC 21005 || || || || || | || |||| || | ||| |||||||| ||||||||||| || Sbjct 304365 TTGCCTCCACGAAGACGTAGGACCAAGTGAAGAGTAGACTCCTTCTGAATGTTATAATCA 304306 Query 21006 GCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACG 21065 | || ||| | || || ||||||||||| ||| |||| || | ||| || ||| | Sbjct 304305 GAGAGAGTTCTTCCATCTTCTAGCTGTTTGCCAGCAAAAATTAGACGCTGTTGATCCGGG 304246 Query 21066 GGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCC 21125 || | ||||||||| || || || || || | | | |||||| || ||| Sbjct 304245 GGGATGCCTTCCTTATCTTGAATTTTAGCCTTGACATTCTCAATAGTATCTGAGGCCTCA 304186 Query 21126 GTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || || || || || || | ||||||||||| |||||||| Sbjct 304185 ACCTCCAAAGTTATAGTTTTACCAGTCAGTGTTTTGACAAAGATTTGCAT 304136 >seq11948 Length=346494 Score = 96.9 bits (106), Expect = 3e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 38729 GGCGGCGTGGGGCTGAACCTGACCGGCGGCAACCACATCATCATGCTGGAGCCGCACTGG 38788 ||||||||||||||||||||| ||||| |||||| | | | || || ||||||||| Sbjct 265018 GGCGGCGTGGGGCTGAACCTGTGCGGCGCCAACCATCTGCTACTCCTCGACCCGCACTGG 264959 Query 38789 AACCCGCAAATTGAGCTGCAGGCGCAAGACCGCATCCACCGCATGGGCCAG 38839 |||||||| | || | ||||||||| |||||| || ||||| | || ||| Sbjct 264958 AACCCGCAGCTCGAACAGCAGGCGCAGGACCGCGTCTACCGCGTCGGGCAG 264908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421950170792084