Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_002486.1 Length=45636 Score E Sequences producing significant alignments: (Bits) Value seq11956 179 1e-40 >seq11956 Length=1081 Score = 179 bits (198), Expect = 1e-40 Identities = 226/305 (74%), Gaps = 4/305 (1%) Strand=Plus/Plus Query 23908 AGAAAAAGTAAATATGAAGAACAAAAATCGATTCTTA-AAGATAGAAATAGCTTTTCTAA 23966 |||||| |||||||||| | || ||||| || |||| |||| ||||||||||| Sbjct 771 AGAAAACAAAAATATGAAGCTTACAAC-CGATTGTTTCAAGAACGAAACAGCTTTTCTAA 829 Query 23967 AACTGATCATGATGCAACTTTTATGAGAATGAAGGAAGACCATATGAAAAATGGCCAACT 24026 ||| ||| ||||| ||||||||| ||||||| || ||| | ||| ||||| || | Sbjct 830 AACAGATACAGATGCCACTTTTATGCGAATGAAAGACGACTACATGCGCAATGGTCAGTT 889 Query 24027 TAAGCCAGGATACAATTTACAAATAGCGACAAATTCTCAATTTGTTTTATCCTATGACCT 24086 |||||||| |||||||||||||| || ||| | ||| | ||| || | ||||| || Sbjct 890 AAAGCCAGGCTACAATTTACAAATCGCAACAGAAAATCAGTATGTCTTGGCTTATGATCT 949 Query 24087 ATTTCAAAACCCGACAGATACTAGAACTTTAATTCCATTTTTA-ACAATGATTCAAAATA 24145 ||| | ||| || ||||| || | ||| |||| ||| || ||| ||| || | | | Sbjct 950 ATTCCCAAATCCAACAGACACAAAAACCTTAAATCCGTTCTTAGACAGCTTTTTAGAGCA 1009 Query 24146 CCTTCGGTTATTTACCGGAGTATATTGTGGCTGATGCAGGTTATGGTAGTGAGCAAAACT 24205 | | | | ||||| || ||||||||||||||||| |||||||||||||| |||| | Sbjct 1010 AC-ACAATGAATTACCTGAATATATTGTGGCTGATGCCGGTTATGGTAGTGAAGAAAATT 1068 Query 24206 ATATG 24210 ||||| Sbjct 1069 ATATG 1073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145809551656524