Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21]
60,049 sequences; 728,788,927 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq5822 98.7 1e-15
seq42682 93.3 6e-14
seq41782 89.7 8e-13
>seq5822
Length=633359
Score = 98.7 bits (108), Expect = 1e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|| || | |||||| ||||| | |||||| ||||| ||||| ||||| || || ||
Sbjct 415195 CCTCCGCGAAGTCTCAATACAAGATGTAAGGTAGACTCTTTCTGGATATTGTAGTCAGAT 415136
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|| || | || || || || || || ||||||||||| || | ||||||||| || ||
Sbjct 415135 AGCGTACGGCCGTCTTCCAACTGCTTGCCAGCAAAAATTAAACGTTGCTGATCTGGTGGG 415076
Query 146171 ATTCCTTCTTTATCTTG 146187
|||||||| ||||||||
Sbjct 415075 ATTCCTTCCTTATCTTG 415059
>seq42682
Length=462070
Score = 93.3 bits (102), Expect = 6e-14
Identities = 152/227 (67%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|| |||| || | || |||| ||| | |||||||||||| || || ||||| ||
Sbjct 303222 CCTCCTCGGAGACGTAGCACCAGATGAAGAGTAGATTCTTTCTGGATGTTGTAATCAGAG 303163
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|| ||||| | ||| |||| ||||| |||||||| || | | || || || |||||
Sbjct 303162 AGGGTTCTTCCATCTTCTAGCTGTTTACCAGCAAAGATAAGACGCTGTTGGTCAGGAGGG 303103
Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230
|||||||||||||| || ||||| ||| ||| |||
Sbjct 303102 ATTCCTTCTTTATCCTGGATTTTAGCTTTTACATTCTCAATTGTATCGGAAGGTTCAACT 303043
Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277
|||| ||| || ||||||||||| | ||||||| || || |||||
Sbjct 303042 TCTAATGTAATAGTTTTACCTGTCAGGGTTTTAACAAAGATCTGCAT 302996
Score = 89.7 bits (98), Expect = 8e-13
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|| || | ||| | || ||||| || | |||||| || || || |||||||| ||
Sbjct 304362 CCTCCACGAAGACGTAGGACCAAGTGAAGAGTAGACTCCTTCTGAATGTTATAATCAGAG 304303
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|||||||| | ||| |||| ||||| ||||||||||| | | || |||||||| ||
Sbjct 304302 AGAGTTCTTCCATCTTCTAGCTGTTTGCCAGCAAAAATTAGACGCTGTTGATCCGGGGGG 304243
Query 146171 ATTCCTTCTTTATCTTG 146187
|| ||||| ||||||||
Sbjct 304242 ATGCCTTCCTTATCTTG 304226
>seq41782
Length=81921
Score = 89.7 bits (98), Expect = 8e-13
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125
||||| | |||||| ||||| ||||| ||||| || || || || || | || ||
Sbjct 22882 AATACAAGATGTAAGGTAGACTCTTTCTGGATATTGTAGTCAGATAGCGTACGGCCGTCT 22823
Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185
|| || || || ||||||||||| || | ||||||||| || || |||||||| ||||||
Sbjct 22822 TCCAACTGCTTGCCAGCAAAAATTAAACGTTGCTGATCTGGTGGGATTCCTTCCTTATCT 22763
Query 146186 TG 146187
||
Sbjct 22762 TG 22761
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 742968299790080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |