Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq5822 98.7 1e-15 seq42682 93.3 6e-14 seq41782 89.7 8e-13 >seq5822 Length=633359 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || | |||||| ||||| | |||||| ||||| ||||| ||||| || || || Sbjct 415195 CCTCCGCGAAGTCTCAATACAAGATGTAAGGTAGACTCTTTCTGGATATTGTAGTCAGAT 415136 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | || || || || || || ||||||||||| || | ||||||||| || || Sbjct 415135 AGCGTACGGCCGTCTTCCAACTGCTTGCCAGCAAAAATTAAACGTTGCTGATCTGGTGGG 415076 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| |||||||| Sbjct 415075 ATTCCTTCCTTATCTTG 415059 >seq42682 Length=462070 Score = 93.3 bits (102), Expect = 6e-14 Identities = 152/227 (67%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || |||| || | || |||| ||| | |||||||||||| || || ||||| || Sbjct 303222 CCTCCTCGGAGACGTAGCACCAGATGAAGAGTAGATTCTTTCTGGATGTTGTAATCAGAG 303163 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | ||| |||| ||||| |||||||| || | | || || || ||||| Sbjct 303162 AGGGTTCTTCCATCTTCTAGCTGTTTACCAGCAAAGATAAGACGCTGTTGGTCAGGAGGG 303103 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 |||||||||||||| || ||||| ||| ||| ||| Sbjct 303102 ATTCCTTCTTTATCCTGGATTTTAGCTTTTACATTCTCAATTGTATCGGAAGGTTCAACT 303043 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| ||| || ||||||||||| | ||||||| || || ||||| Sbjct 303042 TCTAATGTAATAGTTTTACCTGTCAGGGTTTTAACAAAGATCTGCAT 302996 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || | ||| | || ||||| || | |||||| || || || |||||||| || Sbjct 304362 CCTCCACGAAGACGTAGGACCAAGTGAAGAGTAGACTCCTTCTGAATGTTATAATCAGAG 304303 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||| | ||| |||| ||||| ||||||||||| | | || |||||||| || Sbjct 304302 AGAGTTCTTCCATCTTCTAGCTGTTTGCCAGCAAAAATTAGACGCTGTTGATCCGGGGGG 304243 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| |||||||| Sbjct 304242 ATGCCTTCCTTATCTTG 304226 >seq41782 Length=81921 Score = 89.7 bits (98), Expect = 8e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 ||||| | |||||| ||||| ||||| ||||| || || || || || | || || Sbjct 22882 AATACAAGATGTAAGGTAGACTCTTTCTGGATATTGTAGTCAGATAGCGTACGGCCGTCT 22823 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185 || || || || ||||||||||| || | ||||||||| || || |||||||| |||||| Sbjct 22822 TCCAACTGCTTGCCAGCAAAAATTAAACGTTGCTGATCTGGTGGGATTCCTTCCTTATCT 22763 Query 146186 TG 146187 || Sbjct 22762 TG 22761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742968299790080