Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq5822 107 1e-18 seq42682 100 2e-16 seq41782 96.9 2e-15 seq17913 87.8 1e-12 >seq5822 Length=633359 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || |||| || || ||||| ||| |||||||| || |||||||| || Sbjct 415195 CCTCCGCGAAGTCTCAATACAAGATGTAAGGTAGACTCTTTCTGGATATTGTAGTCAGAT 415136 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| |||| |||| |||||||||||||| || ||||| | || ||||| || || Sbjct 415135 AGCGTACGGCCGTCTTCCAACTGCTTGCCAGCAAAAATTAAACGTTGCTGATCTGGTGGG 415076 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||| || ||| || ||||| | || | || | |||| | ||| || Sbjct 415075 ATTCCTTCCTTATCTTGAATC-TTAGCTTTAACATTCTCAATAGTGTCGGAAGCTTCCAC 415017 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || ||||| || || ||||| ||||| |||||||| Sbjct 415016 CTCGAGGGTGATAGTCTTGCCCGTTAGGGTTTTGACAAAAATCTGCAT 414969 >seq42682 Length=462070 Score = 100 bits (110), Expect = 2e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 34192 AGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCC 34251 |||| ||| ||||| ||||||||||| || || | | || |||| ||||||||| Sbjct 304105 AGTAGATTCCTTCTGGATGTTGTAGTCAGATAGTGTTCTTCCATCTTCCAGCTGCTTGCC 304046 Query 34252 TGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTT 34311 || || ||||| ||||| ||||| || | || ||||| || || ||| |||| Sbjct 304045 AGCAAATATGAGACGCTGTTGGTCTGGAGGGATGCCTTCCTTATCCTGAAT-TTTAGCTT 303987 Query 34312 TAG-ATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAG 34370 || || | || | |||| | ||| || |||| |||||||||||||| || | || Sbjct 303986 TAACATTCTCAATAGTGTCGGAAGGTTCTACTTCCAAGGTGATGGTTTTGCCTGTCAAAG 303927 Query 34371 TTTTCACAAAGATCTGCAT 34389 |||| |||||||||||||| Sbjct 303926 TTTTGACAAAGATCTGCAT 303908 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | ||| |||||||| | |||| ||||||||| ||||| || || || Sbjct 302082 CCTCCTCGAAGACGCAGTACCAGGTGAAGAGTAGATTCTTTCTGGATGTTATAATCTGAA 302023 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || | | || || | ||||||||| || || || || ||||| ||||| || Sbjct 302022 AGGGTTCTTCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGAGGG 301963 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || || ||||| || ||||||||| | || | || | || | | ||| || Sbjct 301962 ATGCCTTCTTTGTCCTGAAT-TTTTGCTTTGACATTCTCAATTGTGTCAGATGGTTCAAC 301904 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || ||||||||||| || |||||||| |||||||||||||| Sbjct 301903 CTCTAAGGTAATGGTTTTGCCTGTCAGAGTTTTGACAAAGATCTGCAT 301856 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | ||| |||||||| | |||| ||||||||| ||||| || || || Sbjct 302310 CCTCCTCGAAGACGCAGTACCAGGTGAAGAGTAGATTCTTTCTGGATGTTATAATCTGAA 302251 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || | | || || | ||||||||| || || || || ||||| ||||| ||| Sbjct 302250 AGGGTTCTTCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGA 302191 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | |||||||| || ||| ||||| | || | || | || | | ||| || Sbjct 302190 ATTCCTTCCTTGTCCTGAAT-TTTGGCTTTGACATTCTCAATTGTGTCAGATGGTTCTAC 302132 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||| ||||||||||| || |||||||| ||||| |||||||| Sbjct 302131 CTCTAGCGTAATGGTTTTGCCTGTCAGAGTTTTGACAAAAATCTGCAT 302084 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || |||| ||| | || | |||| ||| ||||| |||||||||||||| Sbjct 302994 CCTCCACGGAGTCTCAACACTAAATGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAG 302935 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || | | || || | ||||||||| || || ||||| ||||| ||||| || Sbjct 302934 AGAGTTCTTCCATCTTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGTTGGTCTGGAGGG 302875 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||| || || ||| ||||| | || | || | |||| | ||| || Sbjct 302874 ATGCCTTCCTTATCCTGAAT-TTTAGCTTTAACATTCTCAATAGTGTCGGAAGGTTCTAC 302816 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || || ||||| || || || ||||| |||||||||||||| Sbjct 302815 TTCCAAGGTAATAGTTTTACCTGTCAGGGTTTTAACAAAGATCTGCAT 302768 Score = 89.7 bits (98), Expect = 3e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| ||||| || ||||| || | | || |||| ||||||||| || || Sbjct 302503 TTCCTTCTGGATGTTATAATCGGAAAGGGTCCTTCCATCTTCCAGCTGCTTGCCAGCAAA 302444 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAG-AT 34316 ||||| ||||| ||||| || | || ||||| || || ||| |||||| || Sbjct 302443 GATGAGACGCTGTTGGTCTGGAGGGATGCCTTCCTTATCCTGAAT-TTTAGCTTTAACAT 302385 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | |||| | ||| || || | || |||||||||||||| |||||||| | Sbjct 302384 TCTCAATAGTGTCGGAAGGTTCTACTTCTAAGGTAATGGTTTTGCCGGTCAGAGTTTTGA 302325 Query 34377 CAAAGATCTGCAT 34389 |||| |||||||| Sbjct 302324 CAAAAATCTGCAT 302312 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34181 ACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCC 34240 || || |||| |||| || ||||||||||| || || || || | | || ||| Sbjct 301836 ACAAGATGTAGAGTAGACTCCTTCTGTATGTTATAATCAGATAGAGTTCTTCCATCTTCC 301777 Query 34241 AACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCT 34300 | ||||||||| || || ||||| ||||||||||| ||| | || |||||||| Sbjct 301776 AGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGA 301717 Query 34301 ATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTG 34360 || || ||| | || | || | ||| | | || || |||| || || ||||| Sbjct 301716 ATTTTAGCCTTCACATTTTCAATAGTATCTGAAGCCTCTACCTCCAAAGTTATAGTTTTA 301657 Query 34361 CCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || ||||| |||||||| ||||| Sbjct 301656 CCAGTTAGTGTTTTGACAAAGATTTGCAT 301628 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || || | ||| | || | |||| ||| ||||| |||||||||||||| Sbjct 303450 CCTCCACGGAGTCTTAACACTAAATGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAG 303391 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || | | || || | ||||||||| || || || || ||||| ||||| ||| Sbjct 303390 AGAGTTCTTCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGG 303331 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||| || || ||| ||||| | || | || | ||| | | || || Sbjct 303330 ATGCCTTCCTTATCCTGAAT-TTTAGCTTTCACATTTTCAATAGTATCTGAAGCCTCTAC 303272 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || || ||||| || || || ||||| |||||||||||||| Sbjct 303271 CTCCAAAGTTATAGTTTTACCAGTCAGTGTTTTGACAAAGATCTGCAT 303224 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 34187 TGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGC 34246 || |||||| ||| ||||| ||||||||||| || || | | || || | ||| Sbjct 301602 TGCAAAGTAGATTCCTTCTGGATGTTGTAGTCAGATAGAGTTCTTCCATCTTCTAGCTGT 301543 Query 34247 TTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTT 34306 ||||| || || ||||| ||||| ||||| || | || ||||| || || ||| Sbjct 301542 TTGCCAGCAAAGATGAGACGCTGTTGGTCTGGAGGGATGCCTTCCTTATCCTGAAT-TTT 301484 Query 34307 TGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGT 34365 ||||| | || | || | |||| | ||| || |||| || || ||||| || || Sbjct 301483 AGCTTTAACATTCTCAATAGTGTCGGAAGGTTCTACTTCCAATGTAATAGTTTTACCTGT 301424 Query 34366 GAGAGTTTTCACAAAGATCTGCAT 34389 || ||||| |||||||||||||| Sbjct 301423 CAGGGTTTTAACAAAGATCTGCAT 301400 >seq41782 Length=81921 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 34181 ACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCC 34240 || || ||||| ||| |||||||| || |||||||| || ||| |||| |||| ||| Sbjct 22879 ACAAGATGTAAGGTAGACTCTTTCTGGATATTGTAGTCAGATAGCGTACGGCCGTCTTCC 22820 Query 34241 AACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCT 34300 ||||||||||| || ||||| | || ||||| || || | | ||||| || Sbjct 22819 AACTGCTTGCCAGCAAAAATTAAACGTTGCTGATCTGGTGGGATTCCTTCCTTATCTTGA 22760 Query 34301 ATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTT 34359 ||| || ||||| | || | || | |||| | ||| || || | ||||| || || Sbjct 22759 ATC-TTAGCTTTAACATTCTCAATAGTGTCGGAAGCTTCCACCTCGAGGGTGATAGTCTT 22701 Query 34360 GCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||| || || ||||| ||||| |||||||| Sbjct 22700 GCCCGTTAGGGTTTTGACAAAAATCTGCAT 22671 >seq17913 Length=240356 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || || || ||||||||||| || || || | || || | ||||||||| ||||| Sbjct 96454 TCCTTTTGAATGTTGTAGTCTGAAAGTGTGCGTCCATCTTCAAGCTGCTTGCCAGCGAAG 96395 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || ||||||||||| ||| | || ||||| || || ||| ||| | || Sbjct 96394 ATAAGTCGCTGCTGGTCTGGGGGAATGCCTTCCTTATCTTGGATTTTTGCCTTCACATTT 96335 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||| | | ||| || || | || |||||||| |||||||| || || ||| Sbjct 96334 TCAATTGTATCAGAGGGTTCCACCTCTAATGTAATGGTTTTTCCGGTGAGTGTCTTAACA 96275 Query 34379 AAGATCTGCAT 34389 || |||||||| Sbjct 96274 AATATCTGCAT 96264 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || || || ||||||||||| || || || | || || | ||||||||| ||||| Sbjct 96910 TCCTTTTGGATGTTGTAGTCTGAAAGTGTGCGTCCATCTTCAAGCTGCTTGCCGGCGAAG 96851 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317 || || ||||||||||| || | || || ||||| || ||||||||| | || Sbjct 96850 ATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCCTGGAT-TTTTGCTTTGACATT 96792 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | ||| | | ||| || || | |||||||||||||| || | ||||| || Sbjct 96791 TTCAATTGTATCAGAGGGTTCAACCTCGAGTGTGATGGTTTTGCCAGTCAAGGTTTTTAC 96732 Query 34378 AAAGATCTGCAT 34389 || |||||||| Sbjct 96731 GAAAATCTGCAT 96720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322835560665440