Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21]
60,049 sequences; 728,788,927 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq5822 107 1e-18
seq42682 100 2e-16
seq41782 96.9 2e-15
seq17913 87.8 1e-12
>seq5822
Length=633359
Score = 107 bits (118), Expect = 1e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| ||||| || |||| || || ||||| ||| |||||||| || |||||||| ||
Sbjct 415195 CCTCCGCGAAGTCTCAATACAAGATGTAAGGTAGACTCTTTCTGGATATTGTAGTCAGAT 415136
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
||| |||| |||| |||||||||||||| || ||||| | || ||||| || ||
Sbjct 415135 AGCGTACGGCCGTCTTCCAACTGCTTGCCAGCAAAAATTAAACGTTGCTGATCTGGTGGG 415076
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341
| | ||||| || ||| || ||||| | || | || | |||| | ||| ||
Sbjct 415075 ATTCCTTCCTTATCTTGAATC-TTAGCTTTAACATTCTCAATAGTGTCGGAAGCTTCCAC 415017
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | ||||| || ||||| || || ||||| ||||| ||||||||
Sbjct 415016 CTCGAGGGTGATAGTCTTGCCCGTTAGGGTTTTGACAAAAATCTGCAT 414969
>seq42682
Length=462070
Score = 100 bits (110), Expect = 2e-16
Identities = 143/199 (72%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 34192 AGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCC 34251
|||| ||| ||||| ||||||||||| || || | | || |||| |||||||||
Sbjct 304105 AGTAGATTCCTTCTGGATGTTGTAGTCAGATAGTGTTCTTCCATCTTCCAGCTGCTTGCC 304046
Query 34252 TGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTT 34311
|| || ||||| ||||| ||||| || | || ||||| || || ||| ||||
Sbjct 304045 AGCAAATATGAGACGCTGTTGGTCTGGAGGGATGCCTTCCTTATCCTGAAT-TTTAGCTT 303987
Query 34312 TAG-ATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAG 34370
|| || | || | |||| | ||| || |||| |||||||||||||| || | ||
Sbjct 303986 TAACATTCTCAATAGTGTCGGAAGGTTCTACTTCCAAGGTGATGGTTTTGCCTGTCAAAG 303927
Query 34371 TTTTCACAAAGATCTGCAT 34389
|||| ||||||||||||||
Sbjct 303926 TTTTGACAAAGATCTGCAT 303908
Score = 98.7 bits (108), Expect = 6e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || || || | ||| |||||||| | |||| ||||||||| ||||| || || ||
Sbjct 302082 CCTCCTCGAAGACGCAGTACCAGGTGAAGAGTAGATTCTTTCTGGATGTTATAATCTGAA 302023
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| | | || || | ||||||||| || || || || ||||| ||||| ||
Sbjct 302022 AGGGTTCTTCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGAGGG 301963
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341
| || || ||||| || ||||||||| | || | || | || | | ||| ||
Sbjct 301962 ATGCCTTCTTTGTCCTGAAT-TTTTGCTTTGACATTCTCAATTGTGTCAGATGGTTCAAC 301904
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | || ||||||||||| || |||||||| ||||||||||||||
Sbjct 301903 CTCTAAGGTAATGGTTTTGCCTGTCAGAGTTTTGACAAAGATCTGCAT 301856
Score = 98.7 bits (108), Expect = 6e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || || || | ||| |||||||| | |||| ||||||||| ||||| || || ||
Sbjct 302310 CCTCCTCGAAGACGCAGTACCAGGTGAAGAGTAGATTCTTTCTGGATGTTATAATCTGAA 302251
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| | | || || | ||||||||| || || || || ||||| ||||| |||
Sbjct 302250 AGGGTTCTTCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGA 302191
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341
| | |||||||| || ||| ||||| | || | || | || | | ||| ||
Sbjct 302190 ATTCCTTCCTTGTCCTGAAT-TTTGGCTTTGACATTCTCAATTGTGTCAGATGGTTCTAC 302132
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | ||| ||||||||||| || |||||||| ||||| ||||||||
Sbjct 302131 CTCTAGCGTAATGGTTTTGCCTGTCAGAGTTTTGACAAAAATCTGCAT 302084
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || || || |||| ||| | || | |||| ||| ||||| ||||||||||||||
Sbjct 302994 CCTCCACGGAGTCTCAACACTAAATGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAG 302935
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| | | || || | ||||||||| || || ||||| ||||| ||||| ||
Sbjct 302934 AGAGTTCTTCCATCTTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGTTGGTCTGGAGGG 302875
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341
| || ||||| || || ||| ||||| | || | || | |||| | ||| ||
Sbjct 302874 ATGCCTTCCTTATCCTGAAT-TTTAGCTTTAACATTCTCAATAGTGTCGGAAGGTTCTAC 302816
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| || || ||||| || || || ||||| ||||||||||||||
Sbjct 302815 TTCCAAGGTAATAGTTTTACCTGTCAGGGTTTTAACAAAGATCTGCAT 302768
Score = 89.7 bits (98), Expect = 3e-13
Identities = 137/193 (71%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257
||| ||||| ||||| || ||||| || | | || |||| ||||||||| || ||
Sbjct 302503 TTCCTTCTGGATGTTATAATCGGAAAGGGTCCTTCCATCTTCCAGCTGCTTGCCAGCAAA 302444
Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAG-AT 34316
||||| ||||| ||||| || | || ||||| || || ||| |||||| ||
Sbjct 302443 GATGAGACGCTGTTGGTCTGGAGGGATGCCTTCCTTATCCTGAAT-TTTAGCTTTAACAT 302385
Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376
| || | |||| | ||| || || | || |||||||||||||| |||||||| |
Sbjct 302384 TCTCAATAGTGTCGGAAGGTTCTACTTCTAAGGTAATGGTTTTGCCGGTCAGAGTTTTGA 302325
Query 34377 CAAAGATCTGCAT 34389
|||| ||||||||
Sbjct 302324 CAAAAATCTGCAT 302312
Score = 84.2 bits (92), Expect = 1e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 34181 ACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCC 34240
|| || |||| |||| || ||||||||||| || || || || | | || |||
Sbjct 301836 ACAAGATGTAGAGTAGACTCCTTCTGTATGTTATAATCAGATAGAGTTCTTCCATCTTCC 301777
Query 34241 AACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCT 34300
| ||||||||| || || ||||| ||||||||||| ||| | || ||||||||
Sbjct 301776 AGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGA 301717
Query 34301 ATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTG 34360
|| || ||| | || | || | ||| | | || || |||| || || |||||
Sbjct 301716 ATTTTAGCCTTCACATTTTCAATAGTATCTGAAGCCTCTACCTCCAAAGTTATAGTTTTA 301657
Query 34361 CCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| || || ||||| |||||||| |||||
Sbjct 301656 CCAGTTAGTGTTTTGACAAAGATTTGCAT 301628
Score = 84.2 bits (92), Expect = 1e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || || || || | ||| | || | |||| ||| ||||| ||||||||||||||
Sbjct 303450 CCTCCACGGAGTCTTAACACTAAATGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAG 303391
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| | | || || | ||||||||| || || || || ||||| ||||| |||
Sbjct 303390 AGAGTTCTTCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGG 303331
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341
| || ||||| || || ||| ||||| | || | || | ||| | | || ||
Sbjct 303330 ATGCCTTCCTTATCCTGAAT-TTTAGCTTTCACATTTTCAATAGTATCTGAAGCCTCTAC 303272
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| || || ||||| || || || ||||| ||||||||||||||
Sbjct 303271 CTCCAAAGTTATAGTTTTACCAGTCAGTGTTTTGACAAAGATCTGCAT 303224
Score = 82.4 bits (90), Expect = 5e-11
Identities = 142/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 34187 TGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGC 34246
|| |||||| ||| ||||| ||||||||||| || || | | || || | |||
Sbjct 301602 TGCAAAGTAGATTCCTTCTGGATGTTGTAGTCAGATAGAGTTCTTCCATCTTCTAGCTGT 301543
Query 34247 TTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTT 34306
||||| || || ||||| ||||| ||||| || | || ||||| || || |||
Sbjct 301542 TTGCCAGCAAAGATGAGACGCTGTTGGTCTGGAGGGATGCCTTCCTTATCCTGAAT-TTT 301484
Query 34307 TGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGT 34365
||||| | || | || | |||| | ||| || |||| || || ||||| || ||
Sbjct 301483 AGCTTTAACATTCTCAATAGTGTCGGAAGGTTCTACTTCCAATGTAATAGTTTTACCTGT 301424
Query 34366 GAGAGTTTTCACAAAGATCTGCAT 34389
|| ||||| ||||||||||||||
Sbjct 301423 CAGGGTTTTAACAAAGATCTGCAT 301400
>seq41782
Length=81921
Score = 96.9 bits (106), Expect = 2e-15
Identities = 149/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 34181 ACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCC 34240
|| || ||||| ||| |||||||| || |||||||| || ||| |||| |||| |||
Sbjct 22879 ACAAGATGTAAGGTAGACTCTTTCTGGATATTGTAGTCAGATAGCGTACGGCCGTCTTCC 22820
Query 34241 AACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCT 34300
||||||||||| || ||||| | || ||||| || || | | ||||| ||
Sbjct 22819 AACTGCTTGCCAGCAAAAATTAAACGTTGCTGATCTGGTGGGATTCCTTCCTTATCTTGA 22760
Query 34301 ATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTT 34359
||| || ||||| | || | || | |||| | ||| || || | ||||| || ||
Sbjct 22759 ATC-TTAGCTTTAACATTCTCAATAGTGTCGGAAGCTTCCACCTCGAGGGTGATAGTCTT 22701
Query 34360 GCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
||| || || ||||| ||||| ||||||||
Sbjct 22700 GCCCGTTAGGGTTTTGACAAAAATCTGCAT 22671
>seq17913
Length=240356
Score = 87.8 bits (96), Expect = 1e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258
|| || || ||||||||||| || || || | || || | ||||||||| |||||
Sbjct 96454 TCCTTTTGAATGTTGTAGTCTGAAAGTGTGCGTCCATCTTCAAGCTGCTTGCCAGCGAAG 96395
Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318
|| || ||||||||||| ||| | || ||||| || || ||| ||| | ||
Sbjct 96394 ATAAGTCGCTGCTGGTCTGGGGGAATGCCTTCCTTATCTTGGATTTTTGCCTTCACATTT 96335
Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378
| || | ||| | | ||| || || | || |||||||| |||||||| || || |||
Sbjct 96334 TCAATTGTATCAGAGGGTTCCACCTCTAATGTAATGGTTTTTCCGGTGAGTGTCTTAACA 96275
Query 34379 AAGATCTGCAT 34389
|| ||||||||
Sbjct 96274 AATATCTGCAT 96264
Score = 82.4 bits (90), Expect = 5e-11
Identities = 135/192 (70%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258
|| || || ||||||||||| || || || | || || | ||||||||| |||||
Sbjct 96910 TCCTTTTGGATGTTGTAGTCTGAAAGTGTGCGTCCATCTTCAAGCTGCTTGCCGGCGAAG 96851
Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317
|| || ||||||||||| || | || || ||||| || ||||||||| | ||
Sbjct 96850 ATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCCTGGAT-TTTTGCTTTGACATT 96792
Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377
| || | ||| | | ||| || || | |||||||||||||| || | ||||| ||
Sbjct 96791 TTCAATTGTATCAGAGGGTTCAACCTCGAGTGTGATGGTTTTGCCAGTCAAGGTTTTTAC 96732
Query 34378 AAAGATCTGCAT 34389
|| ||||||||
Sbjct 96731 GAAAATCTGCAT 96720
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 322835560665440
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