Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_002671.1 Length=15179 Score E Sequences producing significant alignments: (Bits) Value seq35834 776 0.0 >seq35834 Length=16608 Score = 776 bits (860), Expect = 0.0 Identities = 518/570 (91%), Gaps = 5/570 (1%) Strand=Plus/Plus Query 14306 TGTTATACTTGCTGGACGGAAAGATTAGTTGCTTTCCTTACAGTTCATAAAAACCATATC 14365 ||||||||| || | ||||||||||||||||||||||||||||||||||| |||| || Sbjct 3265 TGTTATACTGAGTG-AGGGAAAGATTAGTTGCTTTCCTTACAGTTCATAAAATCCATGTC 3323 Query 14366 ATCAAGATATGGTTTTTATTAATAAATAGGCAGTTTGACATTGAGTATAATTAGTGTTAC 14425 || | ||||||| |||||||||| | || |||||||||||||||||||||||||||| Sbjct 3324 ATTACGATATGGATTTTATTAATGGAGAGT-AGTTTGACATTGAGTATAATTAGTGTTAT 3382 Query 14426 TATGAGAAAGTAGATTTTGTCATGAGTAAAATGTTTTATCGATTCACTTTTCGCAAAATG 14485 ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 3383 TATGAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATA 3442 Query 14486 AGATTTACAATTTTGTCGAAAGGAAATAAATATTATGGCAAATGGAACAGTAAAATGGTT 14545 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3443 AGATTTACAATTTTGTCGAAAGGAAATAAATATTATGGCAAATGGAACAGTAAAATGGTT 3502 Query 14546 TAACGCAGATAAAGGATTTGGCTTTATCACTTCAGAAGAAGGCAAAGATTTGTTCGCTCA 14605 |||||| |||||||||||| ||||| || || ||||| || |||||||||||||||| Sbjct 3503 TAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCA 3562 Query 14606 CTTCTCAGCAATCCAATCTGATGGATTCAAATCACTTGATGAAGGTCAAAAAGTTGAATT 14665 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 3563 CTTCTCAGCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATT 3622 Query 14666 TGATGTTGAAGAAGGTCAACGTGGTCTTCAAGCAGTCAATATCACAAAAGCATAATTATA 14725 |||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||| Sbjct 3623 TGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAATATCACAAAAGCATAATTATA 3682 Query 14726 TTTGAAAATCGTGCATAAACTGGAGCAGTAGCTTCAGtttttttAATACGATGTTGTAAT 14785 | ||||||||||||| ||||||||||| | |||||||||||||| ||| | |||||||| Sbjct 3683 TCTGAAAATCGTGCAGAAACTGGAGCAATTGCTTCAGTTTTTTT-ATATCA-GTTGTAAT 3740 Query 14786 TCTAGGATAGTATGTTATACTTAGCCAGCAAGAGGAAACACACACTTCCCTTTGCGTAAA 14845 | |||| |||||||||||||||||||||||||| ||||||| ||||||| ||| |||| Sbjct 3741 TAGAGGAGAGTATGTTATACTTAGCCAGCAAGAGAAAACACAGACTTCCC-TTGTATAAA 3799 Query 14846 TTAGGGCCACTCTTTTATAGAGTGGTTTTT 14875 ||||||||||||| ||||||||||||||| Sbjct 3800 TTAGGGCCACTCTAATATAGAGTGGTTTTT 3829 Score = 136 bits (150), Expect = 4e-28 Identities = 215/296 (73%), Gaps = 9/296 (3%) Strand=Plus/Plus Query 14385 TAATAAATAGGC-AGTTTGACATTGAGTATAATTAGTGTTACTATGAGAAAGTAGATTTT 14443 || ||||||| | | |||||| ||| ||||| |||||||||| | | |||| |||| Sbjct 2865 TATTAAATAGACCAATTTGACTTTGGTAATAATAGGTGTTACTATTAAGAGGTAGGTTTT 2924 Query 14444 GTCATGAGTA-AAATGTTTTATCGATTCACTTTT-CGCAAAATGAGATTTACA-ATTTTG 14500 ||| |||| |||||||||| || ||||||| |||||||| |||||||| || || Sbjct 2925 GTCTCGAGTTTAAATGTTTTAGGAATGCACTTTTTCGCAAAATAGGATTTACAGATGATG 2984 Query 14501 TCGAAAGGAAATAAATATTATGGCAAATGGAACAGTAAAATGGTTTAACGCAGATAAAGG 14560 |||||||| || ||| ||| || |||||| |||| ||||||||||| || ||||| Sbjct 2985 -CGAAAGGATGTAT-TAT-ATGAATAAAGGAACAATAAATTGGTTTAACGCTGACAAAGG 3041 Query 14561 ATTTGGCTTTATCACTTCAGAAGA-AGGCAAAGATTTGTTCGCTCACTTCTCAGCAATCC 14619 | ||| ||||| | |||| || | || ||||| |||| ||| | ||| | | || | Sbjct 3042 CTATGGTTTTATTATGGCAGATGATATGC-AAGATGTGTTTGCTTATCTCTTATCTATTC 3100 Query 14620 AATCTGATGGATTCAAATCACTTGATGAAGGTCAAAAAGTTGAATTTGATGTTGAA 14675 || ||| || ||| | |||||||||||||| ||| |||||| || || Sbjct 3101 AAGGAAATGATTTTAAAAAATACGATGAAGGTCAAAAGGTTACTTTTGATATTAAA 3156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 48420757307554