Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21]
60,049 sequences; 728,788,927 total letters
Query= NC_002671.1
Length=15179
Score E
Sequences producing significant alignments: (Bits) Value
seq35834 776 0.0
>seq35834
Length=16608
Score = 776 bits (860), Expect = 0.0
Identities = 518/570 (91%), Gaps = 5/570 (1%)
Strand=Plus/Plus
Query 14306 TGTTATACTTGCTGGACGGAAAGATTAGTTGCTTTCCTTACAGTTCATAAAAACCATATC 14365
||||||||| || | ||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 3265 TGTTATACTGAGTG-AGGGAAAGATTAGTTGCTTTCCTTACAGTTCATAAAATCCATGTC 3323
Query 14366 ATCAAGATATGGTTTTTATTAATAAATAGGCAGTTTGACATTGAGTATAATTAGTGTTAC 14425
|| | ||||||| |||||||||| | || ||||||||||||||||||||||||||||
Sbjct 3324 ATTACGATATGGATTTTATTAATGGAGAGT-AGTTTGACATTGAGTATAATTAGTGTTAT 3382
Query 14426 TATGAGAAAGTAGATTTTGTCATGAGTAAAATGTTTTATCGATTCACTTTTCGCAAAATG 14485
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 3383 TATGAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATA 3442
Query 14486 AGATTTACAATTTTGTCGAAAGGAAATAAATATTATGGCAAATGGAACAGTAAAATGGTT 14545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3443 AGATTTACAATTTTGTCGAAAGGAAATAAATATTATGGCAAATGGAACAGTAAAATGGTT 3502
Query 14546 TAACGCAGATAAAGGATTTGGCTTTATCACTTCAGAAGAAGGCAAAGATTTGTTCGCTCA 14605
|||||| |||||||||||| ||||| || || ||||| || ||||||||||||||||
Sbjct 3503 TAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCA 3562
Query 14606 CTTCTCAGCAATCCAATCTGATGGATTCAAATCACTTGATGAAGGTCAAAAAGTTGAATT 14665
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 3563 CTTCTCAGCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATT 3622
Query 14666 TGATGTTGAAGAAGGTCAACGTGGTCTTCAAGCAGTCAATATCACAAAAGCATAATTATA 14725
|||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||
Sbjct 3623 TGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAATATCACAAAAGCATAATTATA 3682
Query 14726 TTTGAAAATCGTGCATAAACTGGAGCAGTAGCTTCAGtttttttAATACGATGTTGTAAT 14785
| ||||||||||||| ||||||||||| | |||||||||||||| ||| | ||||||||
Sbjct 3683 TCTGAAAATCGTGCAGAAACTGGAGCAATTGCTTCAGTTTTTTT-ATATCA-GTTGTAAT 3740
Query 14786 TCTAGGATAGTATGTTATACTTAGCCAGCAAGAGGAAACACACACTTCCCTTTGCGTAAA 14845
| |||| |||||||||||||||||||||||||| ||||||| ||||||| ||| ||||
Sbjct 3741 TAGAGGAGAGTATGTTATACTTAGCCAGCAAGAGAAAACACAGACTTCCC-TTGTATAAA 3799
Query 14846 TTAGGGCCACTCTTTTATAGAGTGGTTTTT 14875
||||||||||||| |||||||||||||||
Sbjct 3800 TTAGGGCCACTCTAATATAGAGTGGTTTTT 3829
Score = 136 bits (150), Expect = 4e-28
Identities = 215/296 (73%), Gaps = 9/296 (3%)
Strand=Plus/Plus
Query 14385 TAATAAATAGGC-AGTTTGACATTGAGTATAATTAGTGTTACTATGAGAAAGTAGATTTT 14443
|| ||||||| | | |||||| ||| ||||| |||||||||| | | |||| ||||
Sbjct 2865 TATTAAATAGACCAATTTGACTTTGGTAATAATAGGTGTTACTATTAAGAGGTAGGTTTT 2924
Query 14444 GTCATGAGTA-AAATGTTTTATCGATTCACTTTT-CGCAAAATGAGATTTACA-ATTTTG 14500
||| |||| |||||||||| || ||||||| |||||||| |||||||| || ||
Sbjct 2925 GTCTCGAGTTTAAATGTTTTAGGAATGCACTTTTTCGCAAAATAGGATTTACAGATGATG 2984
Query 14501 TCGAAAGGAAATAAATATTATGGCAAATGGAACAGTAAAATGGTTTAACGCAGATAAAGG 14560
|||||||| || ||| ||| || |||||| |||| ||||||||||| || |||||
Sbjct 2985 -CGAAAGGATGTAT-TAT-ATGAATAAAGGAACAATAAATTGGTTTAACGCTGACAAAGG 3041
Query 14561 ATTTGGCTTTATCACTTCAGAAGA-AGGCAAAGATTTGTTCGCTCACTTCTCAGCAATCC 14619
| ||| ||||| | |||| || | || ||||| |||| ||| | ||| | | || |
Sbjct 3042 CTATGGTTTTATTATGGCAGATGATATGC-AAGATGTGTTTGCTTATCTCTTATCTATTC 3100
Query 14620 AATCTGATGGATTCAAATCACTTGATGAAGGTCAAAAAGTTGAATTTGATGTTGAA 14675
|| ||| || ||| | |||||||||||||| ||| |||||| || ||
Sbjct 3101 AAGGAAATGATTTTAAAAAATACGATGAAGGTCAAAAGGTTACTTTTGATATTAAA 3156
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 48420757307554
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |