Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq8007 152 4e-32 seq42682 84.2 2e-11 seq17913 82.4 6e-11 >seq8007 Length=263333 Score = 152 bits (168), Expect = 4e-32 Identities = 162/214 (76%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 13216 ACTGGCCCCGTTGTATGAAGCAGAGACCCGAGCAGATGGCGGATGCCGGTTTCTTCTACA 13275 ||||||| | ||||| ||| | ||| || | |||| || || || || ||||| | Sbjct 12129 ACTGGCCTAGAAGTATGCGGCAAAAACCTGAAGATCTGGCCGAAGCTGGCTTTTTCTATA 12070 Query 13276 CTGGCTACGGTGACAATACAAAGTGCTTCTATTGTGACGGCGGATTGAAAGATTGGGAGC 13335 | ||| | || ||||| || || ||||||||||| ||||| || |||||||||||||| Sbjct 12069 CAGGCAATGGCGACAAAACCAAATGCTTCTATTGCGACGGTGGCTTGAAAGATTGGGAAA 12010 Query 13336 CGGAAGATGTACCTTGGGAACAGCATGTAAGATGGTTCGACCGTTGCGCCTACGTTCAGC 13395 || || ||||| ||||||||||| | | |||||| | || || || ||||| || | Sbjct 12009 ACGACGACGTACCATGGGAACAGCACGCCCGTTGGTTCAATCGATGTGCATACGTCCAAC 11950 Query 13396 TAGTCAAGGGTAGAGACTACGTACAGAAAGTCAT 13429 | |||||||||||||| |||||||| ||||| || Sbjct 11949 TTGTCAAGGGTAGAGATTACGTACAAAAAGTGAT 11916 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 12885 GAAGAAGTGCGTTTGAACACCTTTGAGAAGTGGCCTGTGTCGTTTTTGTCGCCGGAAACC 12944 ||||| | |||| | || || ||||| || |||||||| || ||| | ||||| || Sbjct 12493 GAAGAGGAGCGTCTCAAGACATTTGAAAAATGGCCTGTATCTTTTCTATCGCCAGAGCTT 12434 Query 12945 ATGGCTAAAAATGGGTTTTACTACTTGGGTAGGAGCGACGAGGTGCGTTGTGCGTTTTGT 13004 | || ||||||||||| ||||| | || | | || ||||| || ||||| || ||| Sbjct 12433 CTCGCGAAAAATGGGTTCTACTATCTTGGCCGAGGGGATGAGGTTCGGTGTGCCTTCTGT 12374 Query 13005 AAAGTGGAGATAATGCGTTGGAAGGAGGGCGAAGATCCCGCTGCCGACCATAAGAAGTGG 13064 ||||| || ||||||| |||| ||| || || || || || |||| || | ||| Sbjct 12373 AAAGTCGAAATAATGCAATGGATGGAAGGGGATGACCCTGCAACCGATCACCAACGTTGG 12314 Query 13065 GCTCCCCAATG 13075 || |||||||| Sbjct 12313 GCGCCCCAATG 12303 >seq42682 Length=462070 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 || || ||||| || |||||||| ||||||||||| ||| | | || ||| Sbjct 304116 ACTAAATGCAGAGTAGATTCCTTCTGGATGTTGTAGTCAGATAGTGTTCTTCCATCTTCC 304057 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || ||||| | ||||||||||| ||||| | || ||||| ||| | Sbjct 304056 AGCTGCTTGCCAGCAAATATGAGACGCTGTTGGTCTGGAGGGATGCCTTCCTTATCCTGA 303997 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||||| | | | |||| | || || |||| ||| || || ||| Sbjct 303996 ATTTTAGCTTTAACATTCTCAATAGTGTCGGAAGGTTCTACTTCCAAGGTGATGGTTTTG 303937 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||| || |||||||| ||||| Sbjct 303936 CCTGTCAAAGTTTTGACAAAGATCTGCAT 303908 >seq17913 Length=240356 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||||||| | | |||||| || || || ||||||||||||||||||||| Sbjct 97858 CCACCTCTCAAACGGAGTACCAAATGAAGGGTCGACTCCTTCTGAATGTTGTAGTCTGAT 97799 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 ||| ||| | || || || || || |||||||| || | ||||| ||||| || || Sbjct 97798 AGTGTGCGTCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGGGGA 97739 Query 45230 ACACCCTCCTTGTCCGCAATTTT 45252 | || || |||||| ||||| Sbjct 97738 ATGCCTTCTTTGTCCTGGATTTT 97716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394786065326029