Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21]
60,049 sequences; 728,788,927 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq8007 152 4e-32
seq42682 84.2 2e-11
seq17913 82.4 6e-11
>seq8007
Length=263333
Score = 152 bits (168), Expect = 4e-32
Identities = 162/214 (76%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 13216 ACTGGCCCCGTTGTATGAAGCAGAGACCCGAGCAGATGGCGGATGCCGGTTTCTTCTACA 13275
||||||| | ||||| ||| | ||| || | |||| || || || || ||||| |
Sbjct 12129 ACTGGCCTAGAAGTATGCGGCAAAAACCTGAAGATCTGGCCGAAGCTGGCTTTTTCTATA 12070
Query 13276 CTGGCTACGGTGACAATACAAAGTGCTTCTATTGTGACGGCGGATTGAAAGATTGGGAGC 13335
| ||| | || ||||| || || ||||||||||| ||||| || ||||||||||||||
Sbjct 12069 CAGGCAATGGCGACAAAACCAAATGCTTCTATTGCGACGGTGGCTTGAAAGATTGGGAAA 12010
Query 13336 CGGAAGATGTACCTTGGGAACAGCATGTAAGATGGTTCGACCGTTGCGCCTACGTTCAGC 13395
|| || ||||| ||||||||||| | | |||||| | || || || ||||| || |
Sbjct 12009 ACGACGACGTACCATGGGAACAGCACGCCCGTTGGTTCAATCGATGTGCATACGTCCAAC 11950
Query 13396 TAGTCAAGGGTAGAGACTACGTACAGAAAGTCAT 13429
| |||||||||||||| |||||||| ||||| ||
Sbjct 11949 TTGTCAAGGGTAGAGATTACGTACAAAAAGTGAT 11916
Score = 102 bits (112), Expect = 6e-17
Identities = 137/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 12885 GAAGAAGTGCGTTTGAACACCTTTGAGAAGTGGCCTGTGTCGTTTTTGTCGCCGGAAACC 12944
||||| | |||| | || || ||||| || |||||||| || ||| | ||||| ||
Sbjct 12493 GAAGAGGAGCGTCTCAAGACATTTGAAAAATGGCCTGTATCTTTTCTATCGCCAGAGCTT 12434
Query 12945 ATGGCTAAAAATGGGTTTTACTACTTGGGTAGGAGCGACGAGGTGCGTTGTGCGTTTTGT 13004
| || ||||||||||| ||||| | || | | || ||||| || ||||| || |||
Sbjct 12433 CTCGCGAAAAATGGGTTCTACTATCTTGGCCGAGGGGATGAGGTTCGGTGTGCCTTCTGT 12374
Query 13005 AAAGTGGAGATAATGCGTTGGAAGGAGGGCGAAGATCCCGCTGCCGACCATAAGAAGTGG 13064
||||| || ||||||| |||| ||| || || || || || |||| || | |||
Sbjct 12373 AAAGTCGAAATAATGCAATGGATGGAAGGGGATGACCCTGCAACCGATCACCAACGTTGG 12314
Query 13065 GCTCCCCAATG 13075
|| ||||||||
Sbjct 12313 GCGCCCCAATG 12303
>seq42682
Length=462070
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|| || ||||| || |||||||| ||||||||||| ||| | | || |||
Sbjct 304116 ACTAAATGCAGAGTAGATTCCTTCTGGATGTTGTAGTCAGATAGTGTTCTTCCATCTTCC 304057
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || || ||||| | ||||||||||| ||||| | || ||||| ||| |
Sbjct 304056 AGCTGCTTGCCAGCAAATATGAGACGCTGTTGGTCTGGAGGGATGCCTTCCTTATCCTGA 303997
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
||||| ||||| | | | |||| | || || |||| ||| || || |||
Sbjct 303996 ATTTTAGCTTTAACATTCTCAATAGTGTCGGAAGGTTCTACTTCCAAGGTGATGGTTTTG 303937
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| |||| ||| || |||||||| |||||
Sbjct 303936 CCTGTCAAAGTTTTGACAAAGATCTGCAT 303908
>seq17913
Length=240356
Score = 82.4 bits (90), Expect = 6e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
||||||||||| | | |||||| || || || |||||||||||||||||||||
Sbjct 97858 CCACCTCTCAAACGGAGTACCAAATGAAGGGTCGACTCCTTCTGAATGTTGTAGTCTGAT 97799
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
||| ||| | || || || || || |||||||| || | ||||| ||||| || ||
Sbjct 97798 AGTGTGCGTCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGGGGA 97739
Query 45230 ACACCCTCCTTGTCCGCAATTTT 45252
| || || |||||| |||||
Sbjct 97738 ATGCCTTCTTTGTCCTGGATTTT 97716
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 394786065326029
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |