Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq49719 170 2e-37 seq42682 109 5e-19 seq5822 93.3 4e-14 seq41782 87.8 2e-12 >seq49719 Length=92225 Score = 170 bits (188), Expect = 2e-37 Identities = 603/926 (65%), Gaps = 37/926 (4%) Strand=Plus/Minus Query 35876 GCAATCTGTCTGTAGTCGACCACGCCGTTTTCCCATGTACCCGTGATCGGTCCGACGGCT 35935 ||||||| ||||||||| || || |||| | ||| || ||| ||| |||||| || Sbjct 80954 GCAATCTCTCTGTAGTCCACGACACCGTCCTGCCAGGTTCCCTTGACTGGTCCGGTCGCG 80895 Query 35936 ACGCCACTGAATGGATTGTCA-CTGTTGTAGTTGTGGACGCCCGTCCAACCGCGGCCGTA 35994 ||||| |||| || |||| |||| |||||| ||||| || ||||| || || ||||| Sbjct 80894 ACGCCGGTGAAGGGGTTGTTGTCTGT-GTAGTTCTGGACTCCGGTCCAGCCACGACCGTA 80836 Query 35995 CATTGCTACGCCCAACACGAGtttttttGGATTCACTCGTTGCGCGAGCAAAGCGTCCAC 36054 ||| || || || | | || || || || ||||||| || ||||||| | || Sbjct 80835 CATGGCCACTCCGACAATGATCTTCTTAGGGTTCACTCCCTGAGCGAGCAGGTATTGGAC 80776 Query 36055 GGCCACGTTGGCGGTGTACGGTTCGTTAGGTTTCCACGCGGAACCGTACAGTGCCGTCTG 36114 | | | | ||||| | || || || ||||||| | | ||||||||| || || Sbjct 80775 TCCGAAATCTGATGTGTAAGTCTCCTTGGGCCTCCACGCTGGAGCGTACAGTGGGGTTTG 80716 Query 36115 ATGACCGAGATCGGTATTAGACCAAGCTCCTTTGAAATCATAACTCATCACGAAAATTTT 36174 |||||||| | || ||||| ||||| ||||| || || ||||||| ||| || | Sbjct 80715 GTGACCGAGGGTGTCGTTGGACCAGGCTCCCTTGAAGTCGTAGCTCATCAGGAAGATGTG 80656 Query 36175 ATCTAAATACTGTTGTGCTCGGTCGTA----ATTAACCGCGGCGATCTTGTCTATGCCAG 36230 || | || | || || || ||| |||| | | ||||||||| |||| Sbjct 80655 GTCCATGTAGTTCTGCGCCTTGTTGTAGTCGATTACCTG----GATCTTGTCCCATCCAG 80600 Query 36231 CGCTAATCGCTGTGGTGAGTTCTAAAGTACGATTCGTTT--GTATTTGAACTT-GATCG- 36286 | ||||| || | || || || ||| ||| || || | | | | ||| Sbjct 80599 CACTAATAGCGGATGTCAGCTC----GTAT--TTCCTTCCGGTCTCGGCGCCCAGTTCGT 80546 Query 36287 --AGCATGGCGCGCAATTCGCCCAATAAAGCGATATACGTGTTATTGTCGCGTTCCACAT 36344 ||||| | || | || || | | || ||| | | |||| || | Sbjct 80545 TCAGCATTTCACGAAGCTCTTTCATCAGTGTGACGTAC-----ACT-TCGCCGTCTTTAG 80492 Query 36345 CGCCAACG---TTTGGATTGGCGCCTTTGCCGCCCGGAAATTCCCAATCAATATCGATGC 36401 |||| || | || ||||| ||||| || || || || |||||||| ||||| | | Sbjct 80491 GGCCACCGAGGTGAGGGTTGGCACCTTTACCACCAGGGAACTCCCAATCGATATCAACAC 80432 Query 36402 CGTCGAAAAATTTCCATGTCAACACAAATTCACGCACGGATTCGACAAAAATTTGTCGCG 36461 ||||||| || ||||||||| || || || || || ||||||| | || Sbjct 80431 CGTCGAAGAACTTCCATGTCTGCAGGAAGTCTTTTACTGAAGCGACAAAGCGATCTCTTT 80372 Query 36462 TTCGCGCATCGTGCAT-ATGATAGAAGGGATCGGACAGTGTCCAACCGCCGATTGATGCC 36520 | | ||| | | | || |||| ||||||| | ||||| || |||| || | | Sbjct 80371 TAACCTTATCATCAAAGAAGA-AGAACGGATCGGCTAAGGTCCAGCCACCGACGGAAGGC 80313 Query 36521 AACACTTTTAGATTGGGATTGGCCAATTTTGCTGCCATTAATTGACCAAAATTGCCTTTG 36580 | | |||| | ||| ||||| |||| | ||| | |||||||| || || ||| Sbjct 80312 AGAATCTTTAAGTCGGGCCTGGCCTGTTTTAGAGACATCAGCTGACCAAAGTTACCCTTG 80253 Query 36581 TAGGGTTCGTTCCA--TGCGCTAACGCCTGTTTGTGGTTTTTGGAGCGCCGCCCACGGAT 36638 || ||||| ||||| | | || ||| | ||||| || || || || ||||| || | Sbjct 80252 TAAGGTTCATTCCAACTAGACAGAC-CCT-TCTGTGGCTTCTGCAGGGCTGCCCATGGGT 80195 Query 36639 CGTGTATGGAAACTTTAAAATTGTCCCTGCCAGCGCACGATCTTTGCAACGCTTCAAAAC 36698 | || || || || || || | || | ||| ||| || | ||||||||| |||| | Sbjct 80194 CATGAATAGACACCTTGAAGTCCTCGCGACCACTGCAAGACCGTTGCAACGCGGCAAAGC 80135 Query 36699 TCCCCGTGATAGATTTTAAACTGTCGTTTATACCGTCACCGCCGCAAATCGGTATAAATC 36758 | || ||| || ||||||||||| ||||| ||||| || ||||| || || || | Sbjct 80134 TTCCATCGATTTCCTTCAAACTGTCGTTGATACCATCACCACCACAAATAGGAATGAAAC 80075 Query 36759 CGTATAAAATGTGCGAAAGGTTCGGC 36784 |||| | || || || ||||| ||| Sbjct 80074 CGTACAGAAGATGAGACAGGTTGGGC 80049 >seq42682 Length=462070 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 ||||||||| |||||||||||| | || || ||||| || ||| | || || ||| | Sbjct 302767 CATGCAGATCTTTGTTAAAACCCTGACAGGTAAAACTATTACCTTGGAAGTAGAACCTTC 302826 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 ||||| | | || | |||||| | |||||| | || |||||| | || ||||| Sbjct 302827 CGACACTATTGAGAATGTTAAAGCTAAAATTCAGGATAAGGAAGGCATCCCTCCAGACCA 302886 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 || ||| | || | ||| ||||| || || |||||| | ||| | ||| |||| Sbjct 302887 ACAGCGTCTCATCTTTGCTGGCAAGCAGCTTGAAGATGGAAGAACTCTCTCCGACTACAA 302946 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 ||| ||||| || | || |||||||||||||| || | || ||||| Sbjct 302947 CATCCAGAAGGAATCTACTCTTCATTTAGTGTTGAGACTCCGTGGAGG 302994 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| ||||| ||||| | ||||||||||| || ||| | || || ||| | | Sbjct 302312 ATGCAGATTTTTGTCAAAACTCTGACCGGCAAAACCATTACCTTAGAAGTAGAACCTTCC 302371 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | | || | |||||| | |||||| | || |||||| | || ||||| Sbjct 302372 GACACTATTGAGAATGTTAAAGCTAAAATTCAGGATAAGGAAGGCATCCCTCCAGACCAA 302431 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || ||| | || | ||| ||||| || ||||||||| | ||| | |||||| | | Sbjct 302432 CAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGAAGGACCCTTTCCGATTATAAC 302491 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 || ||||| || |||| || |||||||| |||| | || ||||| Sbjct 302492 ATCCAGAAGGAATCCACCCTGCATTTAGTTCTACGTCTCCGTGGAGG 302538 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 ||||||||| |||||||||||| | || || ||||| || || | || || ||| | Sbjct 303451 CATGCAGATCTTTGTTAAAACCCTGACAGGTAAAACTATTACATTGGAAGTAGAACCTTC 303510 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 ||||| | | || | |||||||| |||||| | ||||||||| | || ||||| Sbjct 303511 CGACACTATTGAGAATGTTAAGGCTAAAATTCAGGACAAAGAAGGCATCCCTCCAGACCA 303570 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 || ||| | || | ||| ||||| || ||||||||| | || | ||||| | Sbjct 303571 ACAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGAAGAACCCTTTCTGATTATAA 303630 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 ||| ||||| || | || || |||||||| |||| | || ||||| Sbjct 303631 CATCCAGAAGGAATCTACCCTGCATTTAGTTCTACGTCTCCGTGGAGG 303678 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 ||||||||| |||||||||||| | || || ||||| || || | || || ||| | Sbjct 301399 CATGCAGATCTTTGTTAAAACCCTGACAGGTAAAACTATTACATTGGAAGTAGAACCTTC 301458 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 ||||| | | || | |||||| | |||||| | || |||||| | || ||||| Sbjct 301459 CGACACTATTGAGAATGTTAAAGCTAAAATTCAGGATAAGGAAGGCATCCCTCCAGACCA 301518 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 || ||| | || | ||| |||||||| || |||||| | ||| | || |||| Sbjct 301519 ACAGCGTCTCATCTTTGCTGGCAAACAGCTAGAAGATGGAAGAACTCTATCTGACTACAA 301578 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 ||| ||||| || | || | |||||||| |||| | || ||||| Sbjct 301579 CATCCAGAAGGAATCTACTTTGCATTTAGTTCTACGTCTCCGTGGAGG 301626 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| ||||| ||||| | || || ||||| ||||| | || || || | Sbjct 303224 ATGCAGATCTTTGTCAAAACACTGACTGGTAAAACTATAACTTTGGAGGTAGAGGCTTCA 303283 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | | | |||| ||| || | |||||| | || |||||| | || ||||| Sbjct 303284 GATACTATTGAAAATGTGAAAGCTAAAATTCAGGATAAGGAAGGCATCCCCCCAGACCAA 303343 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || ||| | || | ||| ||||| || || |||||| | ||| | ||| |||| | Sbjct 303344 CAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGAAGAACTCTCTCCGACTACAAC 303403 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 || ||||| || | || ||||||||||||||| || | || ||||| Sbjct 303404 ATCCAGAAGGAATCTACTCTTCATTTAGTGTTAAGACTCCGTGGAGG 303450 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 |||||| || ||||| ||||| | || || ||||| ||||| | || || || | Sbjct 302539 CATGCAAATCTTTGTCAAAACACTGACTGGTAAAACTATAACTTTGGAGGTAGAGGCTTC 302598 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 || | | | |||| ||| || | |||||| | || |||||| | || ||||| Sbjct 302599 AGATACTATTGAAAATGTAAAAGCTAAAATTCAGGACAAGGAAGGCATCCCCCCAGACCA 302658 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 || ||| | || | ||| ||||| || || |||||| | ||| | ||| |||| Sbjct 302659 ACAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGAAGAACTCTCTCCGACTACAA 302718 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 ||| ||||| || | || ||||||||||||||| || | || ||||| Sbjct 302719 CATCCAGAAGGAATCAACTCTTCATTTAGTGTTAAGACTCCGTGGAGG 302766 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 ||||||||| |||||||||||| | || || ||||| || || | || || ||| | Sbjct 302995 CATGCAGATCTTTGTTAAAACCCTGACAGGTAAAACTATTACATTAGAAGTTGAACCTTC 303054 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 ||| | | || | ||| || | ||||| | |||||||| | || |||||| Sbjct 303055 CGATACAATTGAGAATGTAAAAGCTAAAATCCAGGATAAAGAAGGAATCCCTCCTGACCA 303114 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 || ||| | || | ||| || ||||| || |||||| | || | ||||||| Sbjct 303115 ACAGCGTCTTATCTTTGCTGGTAAACAGCTAGAAGATGGAAGAACCCTCTCTGATTACAA 303174 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 ||| |||||||| | || |||||| | ||| |||| | || |||||| Sbjct 303175 CATCCAGAAAGAATCTACTCTTCATCTGGTGCTACGTCTCCGAGGAGGT 303223 >seq5822 Length=633359 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 24826 AACATCATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAA 24885 |||| |||||||| ||||| |||||| |||| ||||| || || ||| |||| || ||| Sbjct 414963 AACACAATGCAGATTTTTGTCAAAACCCTAACGGGCAAGACTATCACCCTCGAGGTGGAA 415022 Query 24886 TCGAGCGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTT 24945 | ||||| | | || | |||||| | || ||| | || ||||| | || Sbjct 415023 GCTTCCGACACTATTGAGAATGTTAAAGCTAAGATTCAAGATAAGGAAGGAATCCCACCA 415082 Query 24946 GACCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGAT 25005 || |||||||||||||| | ||| ||||| || ||||||| | || | || Sbjct 415083 GATCAGCAACGTTTAATTTTTGCTGGCAAGCAGTTGGAAGACGGCCGTACGCTATCTGAC 415142 Query 25006 TACAGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 |||| || ||||||||| | || | ||| | || || || | ||||||||| Sbjct 415143 TACAATATCCAGAAAGAGTCTACCTTACATCTTGTATTGAGACTTCGCGGAGGT 415196 >seq41782 Length=81921 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 24826 AACATCATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAA 24885 |||| |||||||| ||||| |||||| |||| ||||| || || ||| |||| || ||| Sbjct 22665 AACACAATGCAGATTTTTGTCAAAACCCTAACGGGCAAGACTATCACCCTCGAGGTGGAA 22724 Query 24886 TCGAGCGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTT 24945 | ||||| | | || | |||||| | || ||| | || ||||| | || Sbjct 22725 GCTTCCGACACTATTGAGAATGTTAAAGCTAAGATTCAAGATAAGGAAGGAATCCCACCA 22784 Query 24946 GACCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGA 24986 || |||||||||||||| | ||| ||||| || ||||||| Sbjct 22785 GATCAGCAACGTTTAATTTTTGCTGGCAAGCAGTTGGAAGA 22825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417997865394080