Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21]
60,049 sequences; 728,788,927 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq18227 466 2e-126
seq33365 123 3e-23
seq33683 87.8 2e-12
>seq18227
Length=276284
Score = 466 bits (516), Expect = 2e-126
Identities = 1194/1801 (66%), Gaps = 44/1801 (2%)
Strand=Plus/Minus
Query 62024 TTTTATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAG 62083
||| ||||| ||||| | |||||| ||||| | || || ||||| || | ||
Sbjct 241839 TTTAATTTTGGATTTGTCAACTGTGAACTGAATAGCGTTGGCGGCAGGTTTGGTTCTTAA 241780
Query 62084 ATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 62143
|||||||||||| || || || || | |||| | || ||||| || ||||||||
Sbjct 241779 ATAGTACATTCCAGTCTTGAGCCCAATTTTCCAGGCATAGAAATGAATTGAAGTTAGTTT 241720
Query 62144 GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCC 62203
||| | || ||||||| ||||||||| | ||||||||| || || || || |||||
Sbjct 241719 CCCGTAATTAGGTTCTGCTACATGGATATTGAAAGATTGACTCTGGTCAATAAATGCTCC 241660
Query 62204 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA-AA 62262
|| || |||||||||| || | ||||| | ||| ||||| | |||||| || ||
Sbjct 241659 TCTATCCGCAGCCATTTGAATAGTGGTCTTAACGGAAATCTCCCACACAGTTTTGTACAA 241600
Query 62263 CTCGCTTAATATCTTCTGGAAGGTTT---GTATTCTGAATGGATCCACCATCTACCATAA 62319
|| | |||| |||| || | ||| |||| || || || ||| | ||||
Sbjct 241599 ATCTC-TAATTTCTTGGGGTATATTTTCAATATTTTGGATAGAACCATTGTTATGAATAA 241541
Query 62320 TCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCG 62379
| |||||| || || || | ||| || | | || ||| | || || | |||
Sbjct 241540 TGACATTCTTCATGTCTTCGTCCCACAAGTCAGCTTGAGTCAAATCCCTGAGTAAATGAT 241481
Query 62380 GGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACG 62439
| || || ||||| |||||||||||||| ||||| | |||||| || ||| | |
Sbjct 241480 GATTCACCACTTGAAATTCTCCAGACAACACTCTTCTTTGGTAAATGTTTGATGTAAATG 241421
Query 62440 GTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62499
|||| | || ||||| ||||| | ||| || || || || ||||| ||||| || || |
Sbjct 241420 GTTCAAATGATTCATTGTTTCCGAGAATCTGTGCTGTAGAAGCAGTTGGCATTGGAGCTA 241361
Query 62500 CCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGATGTTCCCAATT 62557
||| | ||| | ||| || ||| | || ||||||||||| || | | ||| ||
Sbjct 241360 GCAAAAGTGAATTGCGAAGGCC--ATGCTTTGCAATTTTATCTTTGAGCTCTGTCCAGTT 241303
Query 62558 CCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGC-GT 62616
||||||||| | ||| ||||| || ||||| | |||||| |
Sbjct 241302 CCAAAGATCTGTAGGTGTTTTGTTCCACATGTCGTATTGAAGTATACCTTGACTGGCTGG 241243
Query 62617 ACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTA 62676
|| |||| | || ||| ||| ||||| || || ||||||| |||||| || || |
Sbjct 241242 AC-TTCCTTCGTAAGTACTGTATACACCTTCTTTTTCTGCTAGTTCACAACTTGCTTCCA 241184
Query 62677 ATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGT-GCTTCCGGGCTA 62735
|| || || ||||||||||| || |||| | ||| | || | | |||| | ||
Sbjct 241183 GAGCTCCATAGTAAATGGTTTCGAATATCTGTTGATTCA-ATAATATCGCTTTCTCACTT 241125
Query 62736 TCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATA 62795
||| | || | | || | ||| | ||| || | ||| |||||||||||||| |||
Sbjct 241124 TCATAGGGCAGTCTCATTAGGACAAATGTGTCGGCCAGTCCCTGAACACCAATACCAATA 241065
Query 62796 GGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATA 62855
|| || |||||| |||| || | | ||||||||| | ||||| | || | ||| |||
Sbjct 241064 GGCCTGTGTCTCATATTCGAATTCTTAGCTTCTGGTACTGGATAGAAGTTCACATCAATA 241005
Query 62856 ATTTTATTGAGATTTCTGACAATTACTTTGACCACATC-CTTCAGTTTGAGAAA--ATCA 62912
||||| || | |||| || ||||| | || || | |||| |||| || |
Sbjct 241004 ATTTTGTTTAAATTTTGTGTGATGACTTTTGATATTTCTTTTAATTTTGTGAAATTATAA 240945
Query 62913 AATCGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACC 62972
| | || |||||||||| ||||| || | || || | |||||| || || ||
Sbjct 240944 GTTTTGTCTTCGTTTACAAACATATTCAAAGCTATTGAAGCTAAATTACATACAGCCACT 240885
Query 62973 TCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCT 63032
|||| || | |||| | || ||||| || ||||| || || || || ||||||
Sbjct 240884 TCATCTTCAGAAGTGTATTCAACAATTTCAGTACAGAGATTGCTGCATTTAATCGTTCCT 240825
Query 63033 AAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCA 63092
||||||| |||||| || || |||| || | || || || | ||| |||| || |||
Sbjct 240824 AAATTTTTTTGATTGCTTTTCCTGTTGCAGGAGTCTTTGTATAACATGTATGGTGTTCCA 240765
Query 63093 GTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGC-----CTT-TATTATA 63146
|| || | || | ||||||||| |||||||| | ||| |||| ||| | | | |
Sbjct 240764 GTCTCTACTTGGGCTTCTATAATAGCTTTCCATAATACTTGAGCACGAACTTGTCTAACA 240705
Query 63147 GATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAA 63206
| || | |||||| |||| ||| ||| || || ||||| ||||||||
Sbjct 240704 TAATTAT-TCTCCT-----TTTCATATTTTTCATATAAGGCCTCAAACTCTTCTCCCCA- 240652
Query 63207 ACATTGTC---CAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCC 63263
|||| | || || || | || || |||||||| ||| | ||| | | |
Sbjct 240651 --GGTGTCAGTTAGTCCGGGGCAATTATGAGGGCACATCAAGCTCCAGTTTCCATTA-CT 240595
Query 63264 TTC-ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322
||| |||| |||||| || | |||||| ||||| | || ||| | || || | |
Sbjct 240594 TTCAACTCTTTTCATGAATAAATCAGGTATCCACAAGGCATAAAACAATTCCCTAGCACG 240535
Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382
| |||||| || || ||||||||||| ||||| || ||| | | ||||| | ||||||
Sbjct 240534 AACTTCCTCTTTGCCAGTATTCTTTTTCAGATCCAGAAACTCAAATATATCCGCATGCCA 240475
Query 63383 CGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCT 63442
|||||| ||||||| || | | || |||| || |||||||| ||||| | |||||
Sbjct 240474 CGGTTCTAAGTATACTGCAAATGCACCTGGCCTCTTATTTCCTCCTTGATCGACATATCT 240415
Query 63443 AGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACC 63502
||| ||||||||||| ||||| | ||| || | | ||| || || | |||||| || ||
Sbjct 240414 AGCTGTGTTATTATACACTCTGAGCATGGGTACTAGACCATTCGAAACACCATTTGTTCC 240355
Query 63503 GGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA----TAGACCTATTCCCCCTG 63558
| ||| || | || | ||| ||| || | || || || || |
Sbjct 240354 AGCAATAGTTGTGCCTTTTGCTCTAAT----GCAATGGACATGCAATCCAATCCCACCAG 240299
Query 63559 CCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCAT 63618
| ||| || || || || ||| | || | || ||||| || || |||||||| ||||
Sbjct 240298 CAGATTTTGATATCAAGGCACATTGCTTAAGAGTATCATATATTCCCTCTATGCTGTCAT 240239
Query 63619 CGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATA 63678
| ||||| | || ||| || || | ||| | | ||| | || || |
Sbjct 240238 CTTTCATGGCTATTAAAAAGCATGATGATAATTGAGGTTTGGGAGTGGCAGCTGAGAAGA 240179
Query 63679 AGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTG 63738
|| || || || ||||| |||||||||| |||| ||| || || | |||||||
Sbjct 240178 GAGTTGGGCTGGCATGAGTAAAATATTTTTCAGACAGTAAATTATAAGTGTTGATAGCTG 240119
Query 63739 AGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTT 63798
|| |||||| ||| ||||| | || |||||||| | ||||||||| || || |
Sbjct 240118 CATCGATATCCTCCCCATGTATTCCAATTGAAACACGCATAAGCATGTGCTGTGGCCTCT 240059
Query 63799 C 63799
|
Sbjct 240058 C 240058
Score = 96.9 bits (106), Expect = 4e-15
Identities = 116/158 (73%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 64011 AATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCA 64070
||| |||| ||||||||||| |||| |||||| || || | ||| || || || | |||
Sbjct 230060 AATTGTTTCTTTGTTTCCTTCTGTAAATTTGAAATAGCCAATCTTGCAGCGAGTACTGCA 230001
Query 64071 TAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCT 64130
||||| ||||| | | || || || ||| |||| ||||| | | |||| | ||
Sbjct 230000 TAATCTGGATGATCAATGGTCTTGGTTGCAGCTGTTTCCGCTGCTAAATTGTCAAGCTCC 229941
Query 64131 ACCGTTGTTACTCCATTATATATTCCTTGAATAACCTT 64168
|| |||||||||||| ||| ||||| |||||||||
Sbjct 229940 ACTGTTGTTACTCCAGAATAAATTCCACTAATAACCTT 229903
>seq33365
Length=5281
Score = 123 bits (136), Expect = 3e-23
Identities = 143/193 (74%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901
|||| | | ||| || || ||||| | | |||||| || || |||| || || |||||
Sbjct 4383 ATCTCTGATATATGTGTCTATCAACAAAGAATACATCTCAGAGTGAACATTCTCCATGGC 4442
Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 33961
|| |||||||| ||||||||||| || || || | ||||||||| | || | ||
Sbjct 4443 AATTTGAAATCCATAGAAACATCTGGCTTCAGTGACTTGCACTTCTTGGGAGAACCTCTC 4502
Query 33962 TGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 34021
| | ||||||||| ||||| |||||| ||| ||||| || ||||| ||||| |||||
Sbjct 4503 CACAAGATTTTCATTGACTATCCCATCAGAGGCAGCAAAGAAGGCCAAGACATGCTTTAT 4562
Query 34022 AAAATATTTTTCG 34034
||||| |||||
Sbjct 4563 AAAATGCCTTTCG 4575
Score = 116 bits (128), Expect = 5e-21
Identities = 163/228 (71%), Gaps = 3/228 (1%)
Strand=Plus/Plus
Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663
|||| |||| ||||||||| ||| || || | ||| ||||||||||| ||||| |
Sbjct 3539 CCTCATCTCGTGAAATTAATTCATTACTGAATGTCAATCCAGGCATTAGGCCGCGCTTCT 3598
Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723
| | ||| ||||| || || || || |||||||| ||||| || || || ||||| |
Sbjct 3599 TCAACCAGAATATTGATGCAAAACTGCCAGAAAAGAATATTCCCTCAACAGCTGCAAATG 3658
Query 33724 CAATAAGTCTCTCTCCATAACCGGCGC---TGTCATGTATCCACTTTTGAGCCCAATCGG 33780
| | || | ||||||| || || | || | ||||||| |||||||||| |
Sbjct 3659 CCACAATACGCTCTCCAAAAGTTGCACTCTTGCTAGCAATCCACTGCAGAGCCCAATCTG 3718
Query 33781 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 33828
||||| | ||||| || |||| ||||| || |||||||| | | |||
Sbjct 3719 CCTTCCTCTTTACGCATGGCAGAGTTTCAATAGCATTAAACAAAAAGT 3766
>seq33683
Length=341392
Score = 87.8 bits (96), Expect = 2e-12
Identities = 255/384 (66%), Gaps = 9/384 (2%)
Strand=Plus/Minus
Query 155269 CCCATGTTAGCGGAATCATGTGATTCTGTCAATAAGGCGTTTAAAAAATTTCCATCAGGA 155328
|| ||| | || | | | ||| | ||||| | | ||| | ||||| | ||| |||
Sbjct 86078 CCAATGCTGGCTGCAGCTTGTAAATCTGTAGAAATGGCAATGAAAAAGTGTCCGAATGGA 86019
Query 155329 ATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGTACAAGTTCATaaaaaaaaTAACGAG 155388
|||||| | ||| | ||||| |||||||||||||| ||||| ||||| ||| ||| |||
Sbjct 86018 ATGTTTTCAGAAATTAAATATGATGGTGAAAGAGTGCAAGTACATAAGAAAGGTAAGGAG 85959
Query 155389 TTTGCATTCTTTAGTAGAAACATGAAACCAGTACTCTCTCATAAAGTGGATTATCTCAAA 155448
|| || ||| ||| | ||||| || | | || |||||| | || |||||
Sbjct 85958 TTCAAATATTTTTCCAGAGCATTAAAACCTGTGATGGCACACAAAGTGAGTCATTTCAAA 85899
Query 155449 GAATACATACCGAAAGCATTTAAAAAAGCT-ACG-TCTATCGTATTGGATTCTGAAATTG 155506
|| || | || |||||||| |||| | ||| |||| |||| ||| ||||| |
Sbjct 85898 GATTATCTTCCTCAAGCATTTCCCAAAGGTGACGATCTA--ATATTAGATGCTGAAGTGT 85841
Query 155507 TTCTTGTAGA--CGAACA-TAATGTACCGCTACCGTTTGGAAGTTTAGGTATACACAAAA 155563
| | || || ||||| | | || || || ||||||| || || | |||||||
Sbjct 85840 TAATGGTGGATGTGAACACTGGTAAGCCACTGCCATTTGGAACCTTGGGGAAACACAAAC 85781
Query 155564 AGAAAGAATATAAAAACTCTAACATGTGTTTGTTCGTGTTTGACTGTTTATACTTTGATG 155623
| ||||| ||| | | | | ||||||| | |||||||| | |||| | |
Sbjct 85780 ATGCAGAATTCAAAGATGCACAAGTATGTTTGTATATATTTGACTGCCTTTACTACAACG 85721
Query 155624 GATTCGATA-TGACAGACATTCCA 155646
|| | ||| ||| |||||| |||
Sbjct 85720 GAGAC-ATATTGATAGACATACCA 85698
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629344851036720
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