Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq18227 466 2e-126 seq33365 123 3e-23 seq33683 87.8 2e-12 >seq18227 Length=276284 Score = 466 bits (516), Expect = 2e-126 Identities = 1194/1801 (66%), Gaps = 44/1801 (2%) Strand=Plus/Minus Query 62024 TTTTATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAG 62083 ||| ||||| ||||| | |||||| ||||| | || || ||||| || | || Sbjct 241839 TTTAATTTTGGATTTGTCAACTGTGAACTGAATAGCGTTGGCGGCAGGTTTGGTTCTTAA 241780 Query 62084 ATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 62143 |||||||||||| || || || || | |||| | || ||||| || |||||||| Sbjct 241779 ATAGTACATTCCAGTCTTGAGCCCAATTTTCCAGGCATAGAAATGAATTGAAGTTAGTTT 241720 Query 62144 GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCC 62203 ||| | || ||||||| ||||||||| | ||||||||| || || || || ||||| Sbjct 241719 CCCGTAATTAGGTTCTGCTACATGGATATTGAAAGATTGACTCTGGTCAATAAATGCTCC 241660 Query 62204 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA-AA 62262 || || |||||||||| || | ||||| | ||| ||||| | |||||| || || Sbjct 241659 TCTATCCGCAGCCATTTGAATAGTGGTCTTAACGGAAATCTCCCACACAGTTTTGTACAA 241600 Query 62263 CTCGCTTAATATCTTCTGGAAGGTTT---GTATTCTGAATGGATCCACCATCTACCATAA 62319 || | |||| |||| || | ||| |||| || || || ||| | |||| Sbjct 241599 ATCTC-TAATTTCTTGGGGTATATTTTCAATATTTTGGATAGAACCATTGTTATGAATAA 241541 Query 62320 TCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCG 62379 | |||||| || || || | ||| || | | || ||| | || || | ||| Sbjct 241540 TGACATTCTTCATGTCTTCGTCCCACAAGTCAGCTTGAGTCAAATCCCTGAGTAAATGAT 241481 Query 62380 GGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACG 62439 | || || ||||| |||||||||||||| ||||| | |||||| || ||| | | Sbjct 241480 GATTCACCACTTGAAATTCTCCAGACAACACTCTTCTTTGGTAAATGTTTGATGTAAATG 241421 Query 62440 GTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62499 |||| | || ||||| ||||| | ||| || || || || ||||| ||||| || || | Sbjct 241420 GTTCAAATGATTCATTGTTTCCGAGAATCTGTGCTGTAGAAGCAGTTGGCATTGGAGCTA 241361 Query 62500 CCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGATGTTCCCAATT 62557 ||| | ||| | ||| || ||| | || ||||||||||| || | | ||| || Sbjct 241360 GCAAAAGTGAATTGCGAAGGCC--ATGCTTTGCAATTTTATCTTTGAGCTCTGTCCAGTT 241303 Query 62558 CCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGC-GT 62616 ||||||||| | ||| ||||| || ||||| | |||||| | Sbjct 241302 CCAAAGATCTGTAGGTGTTTTGTTCCACATGTCGTATTGAAGTATACCTTGACTGGCTGG 241243 Query 62617 ACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTA 62676 || |||| | || ||| ||| ||||| || || ||||||| |||||| || || | Sbjct 241242 AC-TTCCTTCGTAAGTACTGTATACACCTTCTTTTTCTGCTAGTTCACAACTTGCTTCCA 241184 Query 62677 ATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGT-GCTTCCGGGCTA 62735 || || || ||||||||||| || |||| | ||| | || | | |||| | || Sbjct 241183 GAGCTCCATAGTAAATGGTTTCGAATATCTGTTGATTCA-ATAATATCGCTTTCTCACTT 241125 Query 62736 TCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATA 62795 ||| | || | | || | ||| | ||| || | ||| |||||||||||||| ||| Sbjct 241124 TCATAGGGCAGTCTCATTAGGACAAATGTGTCGGCCAGTCCCTGAACACCAATACCAATA 241065 Query 62796 GGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATA 62855 || || |||||| |||| || | | ||||||||| | ||||| | || | ||| ||| Sbjct 241064 GGCCTGTGTCTCATATTCGAATTCTTAGCTTCTGGTACTGGATAGAAGTTCACATCAATA 241005 Query 62856 ATTTTATTGAGATTTCTGACAATTACTTTGACCACATC-CTTCAGTTTGAGAAA--ATCA 62912 ||||| || | |||| || ||||| | || || | |||| |||| || | Sbjct 241004 ATTTTGTTTAAATTTTGTGTGATGACTTTTGATATTTCTTTTAATTTTGTGAAATTATAA 240945 Query 62913 AATCGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACC 62972 | | || |||||||||| ||||| || | || || | |||||| || || || Sbjct 240944 GTTTTGTCTTCGTTTACAAACATATTCAAAGCTATTGAAGCTAAATTACATACAGCCACT 240885 Query 62973 TCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCT 63032 |||| || | |||| | || ||||| || ||||| || || || || |||||| Sbjct 240884 TCATCTTCAGAAGTGTATTCAACAATTTCAGTACAGAGATTGCTGCATTTAATCGTTCCT 240825 Query 63033 AAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCA 63092 ||||||| |||||| || || |||| || | || || || | ||| |||| || ||| Sbjct 240824 AAATTTTTTTGATTGCTTTTCCTGTTGCAGGAGTCTTTGTATAACATGTATGGTGTTCCA 240765 Query 63093 GTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGC-----CTT-TATTATA 63146 || || | || | ||||||||| |||||||| | ||| |||| ||| | | | | Sbjct 240764 GTCTCTACTTGGGCTTCTATAATAGCTTTCCATAATACTTGAGCACGAACTTGTCTAACA 240705 Query 63147 GATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAA 63206 | || | |||||| |||| ||| ||| || || ||||| |||||||| Sbjct 240704 TAATTAT-TCTCCT-----TTTCATATTTTTCATATAAGGCCTCAAACTCTTCTCCCCA- 240652 Query 63207 ACATTGTC---CAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCC 63263 |||| | || || || | || || |||||||| ||| | ||| | | | Sbjct 240651 --GGTGTCAGTTAGTCCGGGGCAATTATGAGGGCACATCAAGCTCCAGTTTCCATTA-CT 240595 Query 63264 TTC-ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 ||| |||| |||||| || | |||||| ||||| | || ||| | || || | | Sbjct 240594 TTCAACTCTTTTCATGAATAAATCAGGTATCCACAAGGCATAAAACAATTCCCTAGCACG 240535 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 | |||||| || || ||||||||||| ||||| || ||| | | ||||| | |||||| Sbjct 240534 AACTTCCTCTTTGCCAGTATTCTTTTTCAGATCCAGAAACTCAAATATATCCGCATGCCA 240475 Query 63383 CGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCT 63442 |||||| ||||||| || | | || |||| || |||||||| ||||| | ||||| Sbjct 240474 CGGTTCTAAGTATACTGCAAATGCACCTGGCCTCTTATTTCCTCCTTGATCGACATATCT 240415 Query 63443 AGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACC 63502 ||| ||||||||||| ||||| | ||| || | | ||| || || | |||||| || || Sbjct 240414 AGCTGTGTTATTATACACTCTGAGCATGGGTACTAGACCATTCGAAACACCATTTGTTCC 240355 Query 63503 GGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA----TAGACCTATTCCCCCTG 63558 | ||| || | || | ||| ||| || | || || || || | Sbjct 240354 AGCAATAGTTGTGCCTTTTGCTCTAAT----GCAATGGACATGCAATCCAATCCCACCAG 240299 Query 63559 CCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCAT 63618 | ||| || || || || ||| | || | || ||||| || || |||||||| |||| Sbjct 240298 CAGATTTTGATATCAAGGCACATTGCTTAAGAGTATCATATATTCCCTCTATGCTGTCAT 240239 Query 63619 CGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATA 63678 | ||||| | || ||| || || | ||| | | ||| | || || | Sbjct 240238 CTTTCATGGCTATTAAAAAGCATGATGATAATTGAGGTTTGGGAGTGGCAGCTGAGAAGA 240179 Query 63679 AGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTG 63738 || || || || ||||| |||||||||| |||| ||| || || | ||||||| Sbjct 240178 GAGTTGGGCTGGCATGAGTAAAATATTTTTCAGACAGTAAATTATAAGTGTTGATAGCTG 240119 Query 63739 AGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTT 63798 || |||||| ||| ||||| | || |||||||| | ||||||||| || || | Sbjct 240118 CATCGATATCCTCCCCATGTATTCCAATTGAAACACGCATAAGCATGTGCTGTGGCCTCT 240059 Query 63799 C 63799 | Sbjct 240058 C 240058 Score = 96.9 bits (106), Expect = 4e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 64011 AATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCA 64070 ||| |||| ||||||||||| |||| |||||| || || | ||| || || || | ||| Sbjct 230060 AATTGTTTCTTTGTTTCCTTCTGTAAATTTGAAATAGCCAATCTTGCAGCGAGTACTGCA 230001 Query 64071 TAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCT 64130 ||||| ||||| | | || || || ||| |||| ||||| | | |||| | || Sbjct 230000 TAATCTGGATGATCAATGGTCTTGGTTGCAGCTGTTTCCGCTGCTAAATTGTCAAGCTCC 229941 Query 64131 ACCGTTGTTACTCCATTATATATTCCTTGAATAACCTT 64168 || |||||||||||| ||| ||||| ||||||||| Sbjct 229940 ACTGTTGTTACTCCAGAATAAATTCCACTAATAACCTT 229903 >seq33365 Length=5281 Score = 123 bits (136), Expect = 3e-23 Identities = 143/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||| | | ||| || || ||||| | | |||||| || || |||| || || ||||| Sbjct 4383 ATCTCTGATATATGTGTCTATCAACAAAGAATACATCTCAGAGTGAACATTCTCCATGGC 4442 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 33961 || |||||||| ||||||||||| || || || | ||||||||| | || | || Sbjct 4443 AATTTGAAATCCATAGAAACATCTGGCTTCAGTGACTTGCACTTCTTGGGAGAACCTCTC 4502 Query 33962 TGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 34021 | | ||||||||| ||||| |||||| ||| ||||| || ||||| ||||| ||||| Sbjct 4503 CACAAGATTTTCATTGACTATCCCATCAGAGGCAGCAAAGAAGGCCAAGACATGCTTTAT 4562 Query 34022 AAAATATTTTTCG 34034 ||||| ||||| Sbjct 4563 AAAATGCCTTTCG 4575 Score = 116 bits (128), Expect = 5e-21 Identities = 163/228 (71%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| |||| ||||||||| ||| || || | ||| ||||||||||| ||||| | Sbjct 3539 CCTCATCTCGTGAAATTAATTCATTACTGAATGTCAATCCAGGCATTAGGCCGCGCTTCT 3598 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | | ||| ||||| || || || || |||||||| ||||| || || || ||||| | Sbjct 3599 TCAACCAGAATATTGATGCAAAACTGCCAGAAAAGAATATTCCCTCAACAGCTGCAAATG 3658 Query 33724 CAATAAGTCTCTCTCCATAACCGGCGC---TGTCATGTATCCACTTTTGAGCCCAATCGG 33780 | | || | ||||||| || || | || | ||||||| |||||||||| | Sbjct 3659 CCACAATACGCTCTCCAAAAGTTGCACTCTTGCTAGCAATCCACTGCAGAGCCCAATCTG 3718 Query 33781 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 33828 ||||| | ||||| || |||| ||||| || |||||||| | | ||| Sbjct 3719 CCTTCCTCTTTACGCATGGCAGAGTTTCAATAGCATTAAACAAAAAGT 3766 >seq33683 Length=341392 Score = 87.8 bits (96), Expect = 2e-12 Identities = 255/384 (66%), Gaps = 9/384 (2%) Strand=Plus/Minus Query 155269 CCCATGTTAGCGGAATCATGTGATTCTGTCAATAAGGCGTTTAAAAAATTTCCATCAGGA 155328 || ||| | || | | | ||| | ||||| | | ||| | ||||| | ||| ||| Sbjct 86078 CCAATGCTGGCTGCAGCTTGTAAATCTGTAGAAATGGCAATGAAAAAGTGTCCGAATGGA 86019 Query 155329 ATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGTACAAGTTCATaaaaaaaaTAACGAG 155388 |||||| | ||| | ||||| |||||||||||||| ||||| ||||| ||| ||| ||| Sbjct 86018 ATGTTTTCAGAAATTAAATATGATGGTGAAAGAGTGCAAGTACATAAGAAAGGTAAGGAG 85959 Query 155389 TTTGCATTCTTTAGTAGAAACATGAAACCAGTACTCTCTCATAAAGTGGATTATCTCAAA 155448 || || ||| ||| | ||||| || | | || |||||| | || ||||| Sbjct 85958 TTCAAATATTTTTCCAGAGCATTAAAACCTGTGATGGCACACAAAGTGAGTCATTTCAAA 85899 Query 155449 GAATACATACCGAAAGCATTTAAAAAAGCT-ACG-TCTATCGTATTGGATTCTGAAATTG 155506 || || | || |||||||| |||| | ||| |||| |||| ||| ||||| | Sbjct 85898 GATTATCTTCCTCAAGCATTTCCCAAAGGTGACGATCTA--ATATTAGATGCTGAAGTGT 85841 Query 155507 TTCTTGTAGA--CGAACA-TAATGTACCGCTACCGTTTGGAAGTTTAGGTATACACAAAA 155563 | | || || ||||| | | || || || ||||||| || || | ||||||| Sbjct 85840 TAATGGTGGATGTGAACACTGGTAAGCCACTGCCATTTGGAACCTTGGGGAAACACAAAC 85781 Query 155564 AGAAAGAATATAAAAACTCTAACATGTGTTTGTTCGTGTTTGACTGTTTATACTTTGATG 155623 | ||||| ||| | | | | ||||||| | |||||||| | |||| | | Sbjct 85780 ATGCAGAATTCAAAGATGCACAAGTATGTTTGTATATATTTGACTGCCTTTACTACAACG 85721 Query 155624 GATTCGATA-TGACAGACATTCCA 155646 || | ||| ||| |||||| ||| Sbjct 85720 GAGAC-ATATTGATAGACATACCA 85698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629344851036720