Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21]
60,049 sequences; 728,788,927 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq18227 464 6e-126
seq33365 125 7e-24
>seq18227
Length=276284
Score = 464 bits (514), Expect = 6e-126
Identities = 1186/1782 (67%), Gaps = 36/1782 (2%)
Strand=Plus/Minus
Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849
||||||||||| | |||| || | || | ||| ||||| | ||| |||||||||||
Sbjct 241823 TCAACTGTGAACTGAATAGCGTTGGCGGCAGGTTTGGTTCTTAAATAGTACATTCCAGTC 241764
Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909
|| ||||| | | |||| | || ||||| || || ||||| |||| |||| |
Sbjct 241763 TTGAGCCCAATTTTCCAGGCATAGAAATGAATTGAAGTTAGTTTCCCGTAATTAGGTTCT 241704
Query 36910 TCTATAT--ATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCA 36967
||| || |||||| | |||||||| || || ||||| || ||||| || || ||||
Sbjct 241703 GCTACATGGATATTGAAA--GATTGACTCTGGTCAATAAATGCTCCTCTATCCGCAGCCA 241646
Query 36968 TTTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTAT 37027
||| | | | || || |||||||| || ||||| || | | | | || | |
Sbjct 241645 TTTGAATAGTGGTCTTAACGGAAATCTCCCACACAGTTTTGTACAAATCTCTAATTTCTT 241586
Query 37028 CTGGTAAATCT---AAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGT 37084
|||| || | | || ||| ||||||||||| | | ||| |||||| ||||
Sbjct 241585 GGGGTATATTTTCAATATTTTGGATAGAACCATTGTTATGAATAATGACATTCTTCATGT 241526
Query 37085 CATTATTCCACATATTTCTACTTA--TTAGTTCTCTCAATAGGTGTGGATTTACAACCTG 37142
| | | ||||| | | ||| | | || || | || || |||| || || ||
Sbjct 241525 CTTCGTCCCACAAGT--CAGCTTGAGTCAAATCCCTGAGTAAATGATGATTCACCACTTG 241468
Query 37143 AAAATCTCCAGATAATACTCTTCTT--GTATATATATTGCTAGTATATGGTTCAATGGAC 37200
||| |||||||| || ||||||||| ||| || | ||| | ||| ||||||||| ||
Sbjct 241467 AAATTCTCCAGACAACACTCTTCTTTGGTAAATGT-TTGAT-GTAAATGGTTCAAATGAT 241410
Query 37201 TCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTA 37260
||||| || | | || || | |||||| ||||| |||||||| |||| | ||| |
Sbjct 241409 TCATTGTTTCCGAGAATCTGTGCTGTAGAAGCAGTTGGCATTGGAGCTAGCAAAAGTGAA 241350
Query 37261 TTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTT 37320
|| | | ||||| | |||| | | ||| || || |||| | ||| | ||||||
Sbjct 241349 TTGCGAAGGCCATGCTTTGCAATTTTATCTTTGAGCTCTGTCCAGTTCCAAAGATCTGTA 241290
Query 37321 GGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATAT 37380
|| | || |||||| || ||||| || ||||||| ||| |||||| | | ||
Sbjct 241289 GGTGTTTTGTTCCACATGTCGTATTGAAGTATACCTTGACTGGCTGGACTTCCTTCGTAA 241230
Query 37381 GTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATAT 37440
|| || || | ||| |||||||| ||||| | ||| || || |||| ||
Sbjct 241229 GTACTGTATACACCTTCTTTTTCTGCTAGTTCACAACTTGCTTCCAGAGCTCCATAGTAA 241170
Query 37441 ATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCC 37500
|| |||||||| || ||| ||| |||| | | |||| || || || | | | |
Sbjct 241169 ATGGTTTCGAATATCTGTTGATTCAATAATATCGCTTTCTCACTTTCATAGGGCAGTCTC 241110
Query 37501 AATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTA 37560
| || | ||| || |||| ||||||||||| ||||| || || || ||| || ||
Sbjct 241109 ATTAGGACAAATGTGTCGGCCAGTCCCTGAACACCAATACCAATAGGCCTGTGTCTCATA 241050
Query 37561 TTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTT 37620
|| || | | |||| |||||||| | || | ||| || ||||| |||| ||||
Sbjct 241049 TTCGAATTCTTAGCTTCTGGTACTGGATAGAAGTTCACATCAATAATTTTGTTTAAATTT 240990
Query 37621 TTAACTAGTATTTTCG-TAATTATTCTCAACTTGTCGAAC-ATAAATACGTTATTA-TTA 37677
| | | ||| | || || || | | |||| || |||| | | || ||
Sbjct 240989 TGTGTGATGACTTTTGATATTTCTTTTAATTTTGTGAAATTATAAGTTTTGTCTTCGTTT 240930
Query 37678 ACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTA 37737
||||| || |||| | || || ||| |||||||||||| ||||||||||| | |
Sbjct 240929 ACAAACATATTCAAAGCTATTGAAGCTAAATTACATACAGCCACTTCATCTTCAGAAGTG 240870
Query 37738 AATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTG 37797
||| | ||| || ||||||||||| || || |||| ||||| ||||| ||||||||
Sbjct 240869 TATTCAACAATTTCAGTACAGAGATTGCTGCATTTAATCGTTCCTAAATTTTTTTGATTG 240810
Query 37798 GATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCC 37857
||| | || || || ||||| |||| || || || ||||| |||| ||| ||
Sbjct 240809 CTTTTCCTGTTGCAGGAGTCTTTGTATAACATGTATGGTGTTCCAGTCTCTACTTGGGCT 240750
Query 37858 TCGATAATAGATTTCCATAA-ACTTCTTGCTTTAACGATCGCTT---TAAtttttttCTT 37913
|| ||||||| ||||||||| |||| || ||| | || ||||| || || |
Sbjct 240749 TCTATAATAGCTTTCCATAATACTTGA-GCACGAACT-TGTCTAACATAATTATTCTCCT 240692
Query 37914 TGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGG 37973
| ||| |||| | |||||| | ||| || | ||||| || || ||| ||
Sbjct 240691 T--TTCATATTTTTCATATAAGGCCTCAAACTCTTCTCCCCAGGTGTCAGTTAGTCCGGG 240634
Query 37974 ACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAA 38033
|| | || ||||| | ||| | | ||| |||| || | || ||| |||||
Sbjct 240633 GCAATTATGAGGGCACATCAAGCTCCAGTTTCCATTACTTTCAACTCTTTTCATGAATAA 240574
Query 38034 ATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATT 38093
|||||||| ||| || ||| ||| || || | | | | ||| || || || |||
Sbjct 240573 ATCAGGTATCCACAAGGCATAAAACAATTCCCTAGCACGAACTTCCTCTTTGCCAGTATT 240514
Query 38094 CTTTCTTAAGCTT-AGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACA 38152
|||| || || | ||||| || |||||||| || ||||| ||||||| || | | |
Sbjct 240513 CTTT-TTCAGATCCAGAAACTCAAATATATCCGCATGCCACGGTTCTAAGTATACTGCAA 240455
Query 38153 TTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTC 38212
||| ||||| || |||| ||||| |||| | ||||||| ||||||||||||| | ||
Sbjct 240454 ATGCACCTGGCCTCTTATTTCCTCCTTGATCGACATATCTAGCTGTGTTATTATACACTC 240395
Query 38213 TTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAG 38272
| | ||| ||||||| |||||| || || ||| | || | ||| || || || |
Sbjct 240394 TGAGCATGGGTACTAGACCATTCGAAACACCATTTGTTCCAGCAATAGTTGTGCCTTTTG 240335
Query 38273 CTCGTATATTACTTATCGA----CAATCCTATTCCACCTGCATGTTTTGATATTAAAGCG 38328
||| || | | || || |||||| || ||||| ||| ||||||||| || ||
Sbjct 240334 CTC---TAATGC-AATGGACATGCAATCCAATCCCACCAGCAGATTTTGATATCAAGGCA 240279
Query 38329 CATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAA 38388
||||| || | |||||| |||| || ||||| |||||||| || || | || || |||
Sbjct 240278 CATTGCTTAAGAGTATCATATATTCCCTCTATGCTGTCATCTTTCATGGCTATTAAAAAG 240219
Query 38389 CAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATG 38448
|| || | |||||| ||||| | || || | || || ||||| |
Sbjct 240218 CATGATGATAATTGAGGTTTGGGAGTGGCAGCTGAGAAGAGAGTTGGGCTGGCATGAGTA 240159
Query 38449 AACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGA 38508
|| ||||||| |||| ||||||| || | || | |||| ||||| | || ||
Sbjct 240158 AAATATTTTTCAGACAGTAAATTATAAGTGTTGATAGCTGCATCGATATCCTCCCCATGT 240099
Query 38509 ATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCT 38550
|| || | || || | ||| ||||| || ||||| || |||
Sbjct 240098 ATTCCAATTGAAACACGCATAAGCATGTGCTGTGGCCTCTCT 240057
>seq33365
Length=5281
Score = 125 bits (138), Expect = 7e-24
Identities = 154/210 (73%), Gaps = 3/210 (1%)
Strand=Plus/Plus
Query 11666 ATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATA 11725
|||| ||||||| ||||| ||||| ||||| | || || || || | ||| |||||
Sbjct 3553 ATTAATTCATTACTGAATGTCAATCCAGGCATTAGGCCGCGCTTCTTCAACCAGAATATT 3612
Query 11726 GCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCT 11785
| ||||| |||||||||||||||||||| |||||||||||||| || | | |||
Sbjct 3613 GATGCAAAACTGCCAGAAAAGAATATTCCCTCAACAGCTGCAAATGCCACAATACGCTCT 3672
Query 11786 CCATA---TACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACG 11842
||| | | | | ||||||| ||||| | |||||||| || ||| | ||||||
Sbjct 3673 CCAAAAGTTGCACTCTTGCTAGCAATCCACTGCAGAGCCCAATCTGCCTTCCTCTTTACG 3732
Query 11843 CATTCCATTGTTTCTATAGCGTTAAATAAA 11872
||| || ||||| ||||| ||||| |||
Sbjct 3733 CATGGCAGAGTTTCAATAGCATTAAACAAA 3762
Score = 98.7 bits (108), Expect = 9e-16
Identities = 154/219 (70%), Gaps = 6/219 (3%)
Strand=Plus/Plus
Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949
|||||| | |||||| ||||| || ||| |||||| || || |||| ||| ||||| ||
Sbjct 4383 ATCTCTGATATATGTGTCTATCAACAAAGAATACATCTCAGAGTGAACATTCTCCATGGC 4442
Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTC 12009
|||||||||||||||||||||| || || | || || || | || || ||
Sbjct 4443 AATTTGAAATCCATAGAAACATCTGGCTTCAGTGACTTGCACTTCTTGGGAGAACCTCTC 4502
Query 12010 CGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTAT 12069
| | | ||| ||||| || || |||||| | ||||| || || | | ||| |||||
Sbjct 4503 CACAAGATTTTCATTGACTATCCCATCAGAGGCAGCAAAGAAGGCCAAGACATGCTTTAT 4562
Query 12070 AAAGTATTTTTCG---TCTTTAGTTAATTTATCCCAATC 12105
||| | ||||| |||| |||| | ||||||||
Sbjct 4563 AAAATGCCTTTCGCAATCTT---TTAAACTTTCCCAATC 4598
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468173119428560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |