Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq18227 464 6e-126 seq33365 125 7e-24 >seq18227 Length=276284 Score = 464 bits (514), Expect = 6e-126 Identities = 1186/1782 (67%), Gaps = 36/1782 (2%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 ||||||||||| | |||| || | || | ||| ||||| | ||| ||||||||||| Sbjct 241823 TCAACTGTGAACTGAATAGCGTTGGCGGCAGGTTTGGTTCTTAAATAGTACATTCCAGTC 241764 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || ||||| | | |||| | || ||||| || || ||||| |||| |||| | Sbjct 241763 TTGAGCCCAATTTTCCAGGCATAGAAATGAATTGAAGTTAGTTTCCCGTAATTAGGTTCT 241704 Query 36910 TCTATAT--ATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCA 36967 ||| || |||||| | |||||||| || || ||||| || ||||| || || |||| Sbjct 241703 GCTACATGGATATTGAAA--GATTGACTCTGGTCAATAAATGCTCCTCTATCCGCAGCCA 241646 Query 36968 TTTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTAT 37027 ||| | | | || || |||||||| || ||||| || | | | | || | | Sbjct 241645 TTTGAATAGTGGTCTTAACGGAAATCTCCCACACAGTTTTGTACAAATCTCTAATTTCTT 241586 Query 37028 CTGGTAAATCT---AAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGT 37084 |||| || | | || ||| ||||||||||| | | ||| |||||| |||| Sbjct 241585 GGGGTATATTTTCAATATTTTGGATAGAACCATTGTTATGAATAATGACATTCTTCATGT 241526 Query 37085 CATTATTCCACATATTTCTACTTA--TTAGTTCTCTCAATAGGTGTGGATTTACAACCTG 37142 | | | ||||| | | ||| | | || || | || || |||| || || || Sbjct 241525 CTTCGTCCCACAAGT--CAGCTTGAGTCAAATCCCTGAGTAAATGATGATTCACCACTTG 241468 Query 37143 AAAATCTCCAGATAATACTCTTCTT--GTATATATATTGCTAGTATATGGTTCAATGGAC 37200 ||| |||||||| || ||||||||| ||| || | ||| | ||| ||||||||| || Sbjct 241467 AAATTCTCCAGACAACACTCTTCTTTGGTAAATGT-TTGAT-GTAAATGGTTCAAATGAT 241410 Query 37201 TCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTA 37260 ||||| || | | || || | |||||| ||||| |||||||| |||| | ||| | Sbjct 241409 TCATTGTTTCCGAGAATCTGTGCTGTAGAAGCAGTTGGCATTGGAGCTAGCAAAAGTGAA 241350 Query 37261 TTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTT 37320 || | | ||||| | |||| | | ||| || || |||| | ||| | |||||| Sbjct 241349 TTGCGAAGGCCATGCTTTGCAATTTTATCTTTGAGCTCTGTCCAGTTCCAAAGATCTGTA 241290 Query 37321 GGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATAT 37380 || | || |||||| || ||||| || ||||||| ||| |||||| | | || Sbjct 241289 GGTGTTTTGTTCCACATGTCGTATTGAAGTATACCTTGACTGGCTGGACTTCCTTCGTAA 241230 Query 37381 GTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATAT 37440 || || || | ||| |||||||| ||||| | ||| || || |||| || Sbjct 241229 GTACTGTATACACCTTCTTTTTCTGCTAGTTCACAACTTGCTTCCAGAGCTCCATAGTAA 241170 Query 37441 ATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCC 37500 || |||||||| || ||| ||| |||| | | |||| || || || | | | | Sbjct 241169 ATGGTTTCGAATATCTGTTGATTCAATAATATCGCTTTCTCACTTTCATAGGGCAGTCTC 241110 Query 37501 AATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTA 37560 | || | ||| || |||| ||||||||||| ||||| || || || ||| || || Sbjct 241109 ATTAGGACAAATGTGTCGGCCAGTCCCTGAACACCAATACCAATAGGCCTGTGTCTCATA 241050 Query 37561 TTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTT 37620 || || | | |||| |||||||| | || | ||| || ||||| |||| |||| Sbjct 241049 TTCGAATTCTTAGCTTCTGGTACTGGATAGAAGTTCACATCAATAATTTTGTTTAAATTT 240990 Query 37621 TTAACTAGTATTTTCG-TAATTATTCTCAACTTGTCGAAC-ATAAATACGTTATTA-TTA 37677 | | | ||| | || || || | | |||| || |||| | | || || Sbjct 240989 TGTGTGATGACTTTTGATATTTCTTTTAATTTTGTGAAATTATAAGTTTTGTCTTCGTTT 240930 Query 37678 ACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTA 37737 ||||| || |||| | || || ||| |||||||||||| ||||||||||| | | Sbjct 240929 ACAAACATATTCAAAGCTATTGAAGCTAAATTACATACAGCCACTTCATCTTCAGAAGTG 240870 Query 37738 AATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTG 37797 ||| | ||| || ||||||||||| || || |||| ||||| ||||| |||||||| Sbjct 240869 TATTCAACAATTTCAGTACAGAGATTGCTGCATTTAATCGTTCCTAAATTTTTTTGATTG 240810 Query 37798 GATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCC 37857 ||| | || || || ||||| |||| || || || ||||| |||| ||| || Sbjct 240809 CTTTTCCTGTTGCAGGAGTCTTTGTATAACATGTATGGTGTTCCAGTCTCTACTTGGGCT 240750 Query 37858 TCGATAATAGATTTCCATAA-ACTTCTTGCTTTAACGATCGCTT---TAAtttttttCTT 37913 || ||||||| ||||||||| |||| || ||| | || ||||| || || | Sbjct 240749 TCTATAATAGCTTTCCATAATACTTGA-GCACGAACT-TGTCTAACATAATTATTCTCCT 240692 Query 37914 TGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGG 37973 | ||| |||| | |||||| | ||| || | ||||| || || ||| || Sbjct 240691 T--TTCATATTTTTCATATAAGGCCTCAAACTCTTCTCCCCAGGTGTCAGTTAGTCCGGG 240634 Query 37974 ACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAA 38033 || | || ||||| | ||| | | ||| |||| || | || ||| ||||| Sbjct 240633 GCAATTATGAGGGCACATCAAGCTCCAGTTTCCATTACTTTCAACTCTTTTCATGAATAA 240574 Query 38034 ATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATT 38093 |||||||| ||| || ||| ||| || || | | | | ||| || || || ||| Sbjct 240573 ATCAGGTATCCACAAGGCATAAAACAATTCCCTAGCACGAACTTCCTCTTTGCCAGTATT 240514 Query 38094 CTTTCTTAAGCTT-AGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACA 38152 |||| || || | ||||| || |||||||| || ||||| ||||||| || | | | Sbjct 240513 CTTT-TTCAGATCCAGAAACTCAAATATATCCGCATGCCACGGTTCTAAGTATACTGCAA 240455 Query 38153 TTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTC 38212 ||| ||||| || |||| ||||| |||| | ||||||| ||||||||||||| | || Sbjct 240454 ATGCACCTGGCCTCTTATTTCCTCCTTGATCGACATATCTAGCTGTGTTATTATACACTC 240395 Query 38213 TTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAG 38272 | | ||| ||||||| |||||| || || ||| | || | ||| || || || | Sbjct 240394 TGAGCATGGGTACTAGACCATTCGAAACACCATTTGTTCCAGCAATAGTTGTGCCTTTTG 240335 Query 38273 CTCGTATATTACTTATCGA----CAATCCTATTCCACCTGCATGTTTTGATATTAAAGCG 38328 ||| || | | || || |||||| || ||||| ||| ||||||||| || || Sbjct 240334 CTC---TAATGC-AATGGACATGCAATCCAATCCCACCAGCAGATTTTGATATCAAGGCA 240279 Query 38329 CATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAA 38388 ||||| || | |||||| |||| || ||||| |||||||| || || | || || ||| Sbjct 240278 CATTGCTTAAGAGTATCATATATTCCCTCTATGCTGTCATCTTTCATGGCTATTAAAAAG 240219 Query 38389 CAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATG 38448 || || | |||||| ||||| | || || | || || ||||| | Sbjct 240218 CATGATGATAATTGAGGTTTGGGAGTGGCAGCTGAGAAGAGAGTTGGGCTGGCATGAGTA 240159 Query 38449 AACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGA 38508 || ||||||| |||| ||||||| || | || | |||| ||||| | || || Sbjct 240158 AAATATTTTTCAGACAGTAAATTATAAGTGTTGATAGCTGCATCGATATCCTCCCCATGT 240099 Query 38509 ATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCT 38550 || || | || || | ||| ||||| || ||||| || ||| Sbjct 240098 ATTCCAATTGAAACACGCATAAGCATGTGCTGTGGCCTCTCT 240057 >seq33365 Length=5281 Score = 125 bits (138), Expect = 7e-24 Identities = 154/210 (73%), Gaps = 3/210 (1%) Strand=Plus/Plus Query 11666 ATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATA 11725 |||| ||||||| ||||| ||||| ||||| | || || || || | ||| ||||| Sbjct 3553 ATTAATTCATTACTGAATGTCAATCCAGGCATTAGGCCGCGCTTCTTCAACCAGAATATT 3612 Query 11726 GCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCT 11785 | ||||| |||||||||||||||||||| |||||||||||||| || | | ||| Sbjct 3613 GATGCAAAACTGCCAGAAAAGAATATTCCCTCAACAGCTGCAAATGCCACAATACGCTCT 3672 Query 11786 CCATA---TACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACG 11842 ||| | | | | ||||||| ||||| | |||||||| || ||| | |||||| Sbjct 3673 CCAAAAGTTGCACTCTTGCTAGCAATCCACTGCAGAGCCCAATCTGCCTTCCTCTTTACG 3732 Query 11843 CATTCCATTGTTTCTATAGCGTTAAATAAA 11872 ||| || ||||| ||||| ||||| ||| Sbjct 3733 CATGGCAGAGTTTCAATAGCATTAAACAAA 3762 Score = 98.7 bits (108), Expect = 9e-16 Identities = 154/219 (70%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 |||||| | |||||| ||||| || ||| |||||| || || |||| ||| ||||| || Sbjct 4383 ATCTCTGATATATGTGTCTATCAACAAAGAATACATCTCAGAGTGAACATTCTCCATGGC 4442 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTC 12009 |||||||||||||||||||||| || || | || || || | || || || Sbjct 4443 AATTTGAAATCCATAGAAACATCTGGCTTCAGTGACTTGCACTTCTTGGGAGAACCTCTC 4502 Query 12010 CGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTAT 12069 | | | ||| ||||| || || |||||| | ||||| || || | | ||| ||||| Sbjct 4503 CACAAGATTTTCATTGACTATCCCATCAGAGGCAGCAAAGAAGGCCAAGACATGCTTTAT 4562 Query 12070 AAAGTATTTTTCG---TCTTTAGTTAATTTATCCCAATC 12105 ||| | ||||| |||| |||| | |||||||| Sbjct 4563 AAAATGCCTTTCGCAATCTT---TTAAACTTTCCCAATC 4598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468173119428560