Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq18227 538 5e-148 seq33365 125 1e-23 seq33683 84.2 3e-11 >seq18227 Length=276284 Score = 538 bits (596), Expect = 5e-148 Identities = 1208/1795 (67%), Gaps = 42/1795 (2%) Strand=Plus/Minus Query 78709 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 78768 ||||| | |||||| ||||| | || || ||||| || | || |||||||||||| Sbjct 241826 TTGTCAACTGTGAACTGAATAGCGTTGGCGGCAGGTTTGGTTCTTAAATAGTACATTCCA 241767 Query 78769 GTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGA 78828 || || || || | |||| | |||||||| || |||||||| ||| | || Sbjct 241766 GTCTTGAGCCCAATTTTCCAGGCATAGAAATGAATTGAAGTTAGTTTCCCGTAATTAGGT 241707 Query 78829 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 78888 ||||||| ||||||||| | ||||||||| || || || || ||||| || || |||||| Sbjct 241706 TCTGCTACATGGATATTGAAAGATTGACTCTGGTCAATAAATGCTCCTCTATCCGCAGCC 241647 Query 78889 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 78947 |||| || | ||||| | ||| ||||| | |||||| || || || || ||| || Sbjct 241646 ATTTGAATAGTGGTCTTAACGGAAATCTCCCACACAGTTTTGTACAAATCTCT-AATTTC 241588 Query 78948 TTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 79004 || || | ||| |||| || || || ||| | ||||| |||||| || Sbjct 241587 TTGGGGTATATTTTCAATATTTTGGATAGAACCATTGTTATGAATAATGACATTCTTCAT 241528 Query 79005 CTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTG 79064 ||||| | ||| || | | || ||| | || || | ||| |||| || ||||| Sbjct 241527 GTCTTCGTCCCACAAGTCAGCTTGAGTCAAATCCCTGAGTAAATGATGATTCACCACTTG 241468 Query 79065 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTC 79124 ||||||||||||||| ||||| | |||||| || ||| ||||||| | ||||| Sbjct 241467 AAATTCTCCAGACAACACTCTTCTTTGGTAAATGTTTGATGTAAATGGTTCAAATGATTC 241408 Query 79125 ATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATT 79184 ||| ||||| | ||| || || || || || |||||||| || || | ||| | ||| Sbjct 241407 ATTGTTTCCGAGAATCTGTGCTGTAGAAGCAGTTGGCATTGGAGCTAGCAAAAGTGAATT 241348 Query 79185 TCTAAGACCGTATGATCTG--ATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGAC 79242 | ||| || ||| | || ||||||||||| || | ||| | ||||||||| | Sbjct 241347 GCGAAGGCC--ATGCTTTGCAATTTTATCTTTGAGCTCTGTCCAGTTCCAAAGATCTGTA 241290 Query 79243 GGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTAT 79302 || ||||| | || ||||| || ||||| | ||| || |||| ||| Sbjct 241289 GGTGTTTTGTTCCACATGTCGTATTGAAGTATACCTTGACTGGCTGGACTTCCTTCGTAA 241230 Query 79303 GTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAA 79362 || || ||||| ||||| |||| ||||||||| || || | ||||| || ||| Sbjct 241229 GTACTGTATACACCTTCTTTTTCTGCTAGTTCACAACTTGCTTCCAGAGCTCCATAGTAA 241170 Query 79363 ATGGTTTCGAAAATCTTCTTATTGAGATCTTGT-GCTTCTAGGCTATCAAATGGATAATT 79421 ||||||||||| |||| | ||| | || | | |||| || ||| | || | Sbjct 241169 ATGGTTTCGAATATCTGTTGATTCA-ATAATATCGCTTTCTCACTTTCATAGGGCAGTCT 241111 Query 79422 TAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 79481 | || | ||| | ||| || | ||| |||||||||||||| ||||| || |||||| | Sbjct 241110 CATTAGGACAAATGTGTCGGCCAGTCCCTGAACACCAATACCAATAGGCCTGTGTCTCAT 241051 Query 79482 ATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 79541 ||| ||| | | ||||||||| | ||||| | || | ||| |||||||| || | ||| Sbjct 241050 ATTCGAATTCTTAGCTTCTGGTACTGGATAGAAGTTCACATCAATAATTTTGTTTAAATT 240991 Query 79542 CCTGACT-ATTACTTTGACCACATCCTTTAGTTT-GAGAAAATCAAA---TCGTCCATCT 79596 || | || ||||| | || |||| ||| | |||| | || | ||| || Sbjct 240990 T-TGTGTGATGACTTTTGATATTTCTTTTAATTTTGTGAAATTATAAGTTTTGTCT-TCG 240933 Query 79597 ATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 79656 |||||||||| ||||| || | || || | |||||| || || || |||| || Sbjct 240932 TTTACAAACATATTCAAAGCTATTGAAGCTAAATTACATACAGCCACTTCATCTTCAGAA 240873 Query 79657 GCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGA 79716 | |||| | |||||||| ||||| || || || ||||| ||||||||||||| |||| Sbjct 240872 GTGTATTCAACAATTTCAGTACAGAGATTGCTGCATTTAATCGTTCCTAAATTTTTTTGA 240813 Query 79717 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGA 79776 || || || |||| || | || || || | ||| | || || ||||| || | || Sbjct 240812 TTGCTTTTCCTGTTGCAGGAGTCTTTGTATAACATGTATGGTGTTCCAGTCTCTACTTGG 240753 Query 79777 GATTCTATAATCGCTTTCCAGACGACTCGAGC-----CTT-TATTATAGACTTGTATCTC 79830 | ||||||||| |||||||| | ||| |||| ||| | | | | | || | |||| Sbjct 240752 GCTTCTATAATAGCTTTCCATAATACTTGAGCACGAACTTGTCTAACATAATTAT-TCTC 240694 Query 79831 TTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAAT 79890 | |||| |||| | |||||| || ||||| |||||||| || || | Sbjct 240693 CT-----TTTCATATTTTTCATATAAGGCCTCAAACTCTTCTCCCCAGGTGTCAGTTAGT 240639 Query 79891 CCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTT--ACTCGTTTCA 79948 || || || | | ||| |||||||| ||| | ||||| | |||| |||| ||||| Sbjct 240638 CCGGGGCAATTATGAGGGCACATCAAGCTCCAGTTTCCAT--TACTTTCAACTCTTTTCA 240581 Query 79949 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTC 80008 | || | |||||| ||||| | || ||| | || || | | | ||||| || | Sbjct 240580 TGAATAAATCAGGTATCCACAAGGCATAAAACAATTCCCTAGCACGAACTTCCTCTTTGC 240521 Query 80009 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 80068 | ||||||||||| ||||| || ||| | | ||||| | |||||||||||| ||||||| Sbjct 240520 CAGTATTCTTTTTCAGATCCAGAAACTCAAATATATCCGCATGCCACGGTTCTAAGTATA 240461 Query 80069 TGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 80128 || | | || || | || |||||||| ||||| | |||||||| |||||||||| Sbjct 240460 CTGCAAATGCACCTGGCCTCTTATTTCCTCCTTGATCGACATATCTAGCTGTGTTATTAT 240401 Query 80129 AAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTC 80188 | ||||| | ||| || | | |||||| || |||||| || || | ||| | | Sbjct 240400 ACACTCTGAGCATGGGTACTAGACCATTCGAAACACCATTTGTTCCAGCAATAGTTGTGC 240341 Query 80189 CACTGGCACGAATATTACTAATTGA----TAGACCTATTCCCCCTGCCATTTTAGAGATT 80244 | | || | ||| ||| || | || || || || || ||| || || Sbjct 240340 CTTTTGCTCTAAT----GCAATGGACATGCAATCCAATCCCACCAGCAGATTTTGATATC 240285 Query 80245 AATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGT 80304 || || ||| | || | |||||||| || ||||||||||| ||||| ||||| | | Sbjct 240284 AAGGCACATTGCTTAAGAGTATCATATATTCCCTCTATGCTGTCATCTTTCATGGCTATT 240225 Query 80305 AGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 80364 | ||| || || | ||| | ||| | || || | || || || Sbjct 240224 AAAAAGCATGATGATAATTGAGGTTTGGGAGTGGCAGCTGAGAAGAGAGTTGGGCTGGCA 240165 Query 80365 TGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCAT 80424 || ||||| ||||||||||||||| ||| || || | ||||||| || |||||| Sbjct 240164 TGAGTAAAATATTTTTCAGACAGTAAATTATAAGTGTTGATAGCTGCATCGATATCCTCC 240105 Query 80425 TGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCT 80479 ||| ||||| | | |||||||| | ||||||||| || || || | |||| Sbjct 240104 CCATGTATTCCAATTGAAACACGCATAAGCATGTGCTGTGGCCTCTCTGCTATCT 240050 Score = 87.8 bits (96), Expect = 3e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 80683 AATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCA 80742 ||| |||| ||||||||||| |||| |||||| | || | ||| || || | | ||| Sbjct 230060 AATTGTTTCTTTGTTTCCTTCTGTAAATTTGAAATAGCCAATCTTGCAGCGAGTACTGCA 230001 Query 80743 TAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCT 80802 ||||||||||| | | || || || ||| |||| ||||| | | |||| | || Sbjct 230000 TAATCTGGATGATCAATGGTCTTGGTTGCAGCTGTTTCCGCTGCTAAATTGTCAAGCTCC 229941 Query 80803 ACCGTTGTTACTCCATTATATATTCCTTGGATAACCTT 80840 || |||||||||||| ||| ||||| |||||||| Sbjct 229940 ACTGTTGTTACTCCAGAATAAATTCCACTAATAACCTT 229903 >seq33365 Length=5281 Score = 125 bits (138), Expect = 1e-23 Identities = 165/228 (72%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| |||| ||||| ||| || || || | ||| ||||||||||| ||||| | Sbjct 3539 CCTCATCTCGTGAAATTAATTCATTACTGAATGTCAATCCAGGCATTAGGCCGCGCTTCT 3598 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | | ||| ||||| || ||||| ||||||||||| ||||| || || || ||||| | Sbjct 3599 TCAACCAGAATATTGATGCAAAACTGCCAGAAAAGAATATTCCCTCAACAGCTGCAAATG 3658 Query 50102 CAACAAGTCTCTCTCCATAACTGGCGC---TGTCATGTATCCACTTTTGAGCCCAATCGG 50158 | |||| | ||||||| || | || | || | ||||||| |||||||||| | Sbjct 3659 CCACAATACGCTCTCCAAAAGTTGCACTCTTGCTAGCAATCCACTGCAGAGCCCAATCTG 3718 Query 50159 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 50206 ||||| | ||||| || |||| ||||| || |||||||| | | ||| Sbjct 3719 CCTTCCTCTTTACGCATGGCAGAGTTTCAATAGCATTAAACAAAAAGT 3766 Score = 123 bits (136), Expect = 4e-23 Identities = 143/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 |||| | | ||| || || ||||| | | |||||| || || |||| || || ||||| Sbjct 4383 ATCTCTGATATATGTGTCTATCAACAAAGAATACATCTCAGAGTGAACATTCTCCATGGC 4442 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 50339 || |||||||| ||||||||||| || || || | ||||||||| | || | || Sbjct 4443 AATTTGAAATCCATAGAAACATCTGGCTTCAGTGACTTGCACTTCTTGGGAGAACCTCTC 4502 Query 50340 AGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 50399 | | ||||||||| ||||| || ||| ||| ||||| || ||||| ||||| ||||| Sbjct 4503 CACAAGATTTTCATTGACTATCCCATCAGAGGCAGCAAAGAAGGCCAAGACATGCTTTAT 4562 Query 50400 AAAATGTTTTTCG 50412 |||||| ||||| Sbjct 4563 AAAATGCCTTTCG 4575 Score = 86.0 bits (94), Expect = 9e-12 Identities = 81/102 (79%), Gaps = 1/102 (1%) Strand=Plus/Plus Query 50441 TATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 50500 || |||| |||| |||||||||||| |||||||| || || || || |||||||| |||| Sbjct 4927 TACCTTT-GATAGATCTACTTCTTCGACTGTCCAGAAAGAAGCTTCAGCCTTTTTGTACA 4985 Query 50501 TATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATC 50542 | | ||| || || |||||| || |||||||| || |||| Sbjct 4986 TTTCCCAAATATCGGGATATTTAATGGGGAAAATGACGAATC 5027 >seq33683 Length=341392 Score = 84.2 bits (92), Expect = 3e-11 Identities = 281/429 (66%), Gaps = 9/429 (2%) Strand=Plus/Minus Query 173708 CCCATGTTAGCAGAATCATGTGATTCTGTCAATAAGGCGTTTAAAAAATTTCCATCAGGA 173767 || ||| | || | | | ||| | ||||| | | ||| | ||||| | ||| ||| Sbjct 86078 CCAATGCTGGCTGCAGCTTGTAAATCTGTAGAAATGGCAATGAAAAAGTGTCCGAATGGA 86019 Query 173768 ATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGTACAAGTTCATAAAAATAATAACGAG 173827 |||||| | ||| | ||||| |||||||||||||| ||||| ||||| || ||| ||| Sbjct 86018 ATGTTTTCAGAAATTAAATATGATGGTGAAAGAGTGCAAGTACATAAGAAAGGTAAGGAG 85959 Query 173828 TTTGCCTTCTTTAGTAGAAACATGAAACCAGTACTCTCTCATAAAGTGGATTATCTCAAA 173887 || | ||| ||| | ||||| || | | || |||||| | || ||||| Sbjct 85958 TTCAAATATTTTTCCAGAGCATTAAAACCTGTGATGGCACACAAAGTGAGTCATTTCAAA 85899 Query 173888 GAATACATACCGAAAGCATTTAAAAAAGCT-ACG-TCTATCATATTGGATTCTGAAATTG 173945 || || | || |||||||| |||| | ||| |||| ||||| ||| ||||| | Sbjct 85898 GATTATCTTCCTCAAGCATTTCCCAAAGGTGACGATCTA--ATATTAGATGCTGAAGTGT 85841 Query 173946 TTCTTGTAGA--CGAACA-TAATGTACCGCTACCGTTTGGAAGTTTAGGTATACACAAAA 174002 | | || || ||||| | | || || || ||||||| || || | ||||||| Sbjct 85840 TAATGGTGGATGTGAACACTGGTAAGCCACTGCCATTTGGAACCTTGGGGAAACACAAAC 85781 Query 174003 AGAAAGAATATAAAAACTCTAACATGTGTTTGTTCGTGTTTGACTGTTTGTACTTTGATG 174062 | ||||| ||| | | | | ||||||| | |||||||| | |||| | | Sbjct 85780 ATGCAGAATTCAAAGATGCACAAGTATGTTTGTATATATTTGACTGCCTTTACTACAACG 85721 Query 174063 GATTCGATA-TGACGGACATTCCATTGTACGAACGAAGATCTTTTCTCAAAGATGTTATG 174121 || | ||| ||| ||||| ||| | | |||| | | || || ||||| ||| Sbjct 85720 GAGAC-ATATTGATAGACATACCAATTAAGAAACGCCGTCAAATACTGAATGATGTCATG 85662 Query 174122 GTTGAAATA 174130 |||||||| Sbjct 85661 ATTGAAATA 85653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717729658460360