Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq42682 100 2e-16 >seq42682 Length=462070 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||||||||| ||||||||||| ||||| | ||| ||||| || | ||||| ||||| Sbjct 302767 GCCTCCACGGAGTCTTAACACTAAATGAAGAGTTGATTCCTTCTGGATGTTGTAGTCGGA 302708 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || | | | || || | || ||||| ||||| || | |||||||| || | || Sbjct 302707 GAGAGTTCTTCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGG 302648 Query 43002 CACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | ||||| || || ||| || |||| || | ||| || || |||||| | Sbjct 302647 GATGCCTTCCTTGTC-CTGAATTTTAGCTTTTACATTTTCAATAGTATCTGAAGCCTCTA 302589 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | ||||||||||| || || || ||||| ||||| |||||||| Sbjct 302588 CCTCCAAAGTTATAGTTTTACCAGTCAGTGTTTTGACAAAGATTTGCAT 302540 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||||||||| ||||||||||| ||||| | ||| ||||| || | ||||| ||||| Sbjct 303451 GCCTCCACGGAGTCTTAACACTAAATGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGA 303392 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || | | | || || | || ||||| ||||| || | |||||||| || | || Sbjct 303391 GAGAGTTCTTCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGG 303332 Query 43002 CACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | ||||| || || ||| || |||| || | ||| || || |||||| | Sbjct 303331 GATGCCTTCCTTATC-CTGAATTTTAGCTTTCACATTTTCAATAGTATCTGAAGCCTCTA 303273 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | ||||||||||| || || || ||||| ||||| || ||||| Sbjct 303272 CCTCCAAAGTTATAGTTTTACCAGTCAGTGTTTTGACAAAGATCTGCAT 303224 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||||||||| || | || ||||| || | ||| |||||| || | || ||||| || Sbjct 304363 GCCTCCACGAAGACGTAGGACCAAGTGAAGAGTAGACTCCTTCTGAATGTTATAATCAGA 304304 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || | | | || || | |||||||| |||||||| | ||||||||||| | || Sbjct 304303 GAGAGTTCTTCCATCTTCTAGCTGTTTGCCAGCAAAAATTAGACGCTGTTGATCCGGGGG 304244 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || || | ||||| | ||| || || ||||| || Sbjct 304243 GATGCCTTCCTTATCTTGAATTTTAGCCTTGACATTCTCAATAGTATCTGAGGCCTCAAC 304184 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | ||||||||||| || || || ||||| ||||| |||||||| Sbjct 304183 CTCCAAAGTTATAGTTTTACCAGTCAGTGTTTTGACAAAGATTTGCAT 304136 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | ||| || | ||| | ||| |||||| || | || ||||| || Sbjct 303906 CCTCCACGTAGACGTAAGACGAGATGCAGAGTAGACTCCTTCTGAATGTTATAATCAGAA 303847 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | | || |||| || ||||| |||||||| | |||||||| || | || Sbjct 303846 AGGGTTCTTCCATCTTCCAGCTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGGGGG 303787 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || |||| | | || || | ||| || || |||||| || Sbjct 303786 ATGCCTTCCTTGTC-CTGAATTTTAGCCTTCACATTTTCAATAGTATCTGAAGCCTCTAC 303728 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | ||||||||||| || || || ||||| ||||| |||||||| Sbjct 303727 CTCCAAAGTTATAGTTTTACCAGTCAGTGTTTTGACAAAGATTTGCAT 303680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381090495730842