Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21]
60,049 sequences; 728,788,927 total letters
Query= NC_004062.1
Length=119217
Score E
Sequences producing significant alignments: (Bits) Value
seq42682 100 2e-16
>seq42682
Length=462070
Score = 100 bits (110), Expect = 2e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941
||||||||| ||||||||||| ||||| | ||| ||||| || | ||||| |||||
Sbjct 302767 GCCTCCACGGAGTCTTAACACTAAATGAAGAGTTGATTCCTTCTGGATGTTGTAGTCGGA 302708
Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001
| || | | | || || | || ||||| ||||| || | |||||||| || | ||
Sbjct 302707 GAGAGTTCTTCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGG 302648
Query 43002 CACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060
| ||||| || || ||| || |||| || | ||| || || |||||| |
Sbjct 302647 GATGCCTTCCTTGTC-CTGAATTTTAGCTTTTACATTTTCAATAGTATCTGAAGCCTCTA 302589
Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
| || | ||||||||||| || || || ||||| ||||| ||||||||
Sbjct 302588 CCTCCAAAGTTATAGTTTTACCAGTCAGTGTTTTGACAAAGATTTGCAT 302540
Score = 95.1 bits (104), Expect = 9e-15
Identities = 160/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941
||||||||| ||||||||||| ||||| | ||| ||||| || | ||||| |||||
Sbjct 303451 GCCTCCACGGAGTCTTAACACTAAATGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGA 303392
Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001
| || | | | || || | || ||||| ||||| || | |||||||| || | ||
Sbjct 303391 GAGAGTTCTTCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGG 303332
Query 43002 CACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060
| ||||| || || ||| || |||| || | ||| || || |||||| |
Sbjct 303331 GATGCCTTCCTTATC-CTGAATTTTAGCTTTCACATTTTCAATAGTATCTGAAGCCTCTA 303273
Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
| || | ||||||||||| || || || ||||| ||||| || |||||
Sbjct 303272 CCTCCAAAGTTATAGTTTTACCAGTCAGTGTTTTGACAAAGATCTGCAT 303224
Score = 87.8 bits (96), Expect = 1e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941
||||||||| || | || ||||| || | ||| |||||| || | || ||||| ||
Sbjct 304363 GCCTCCACGAAGACGTAGGACCAAGTGAAGAGTAGACTCCTTCTGAATGTTATAATCAGA 304304
Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001
| || | | | || || | |||||||| |||||||| | ||||||||||| | ||
Sbjct 304303 GAGAGTTCTTCCATCTTCTAGCTGTTTGCCAGCAAAAATTAGACGCTGTTGATCCGGGGG 304244
Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061
| ||||| || || || | ||||| | ||| || || ||||| ||
Sbjct 304243 GATGCCTTCCTTATCTTGAATTTTAGCCTTGACATTCTCAATAGTATCTGAGGCCTCAAC 304184
Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|| | ||||||||||| || || || ||||| ||||| ||||||||
Sbjct 304183 CTCCAAAGTTATAGTTTTACCAGTCAGTGTTTTGACAAAGATTTGCAT 304136
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|||||||| || | ||| || | ||| | ||| |||||| || | || ||||| ||
Sbjct 303906 CCTCCACGTAGACGTAAGACGAGATGCAGAGTAGACTCCTTCTGAATGTTATAATCAGAA 303847
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| || | | | || |||| || ||||| |||||||| | |||||||| || | ||
Sbjct 303846 AGGGTTCTTCCATCTTCCAGCTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGGGGG 303787
Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061
| ||||| || || |||| | | || || | ||| || || |||||| ||
Sbjct 303786 ATGCCTTCCTTGTC-CTGAATTTTAGCCTTCACATTTTCAATAGTATCTGAAGCCTCTAC 303728
Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|| | ||||||||||| || || || ||||| ||||| ||||||||
Sbjct 303727 CTCCAAAGTTATAGTTTTACCAGTCAGTGTTTTGACAAAGATTTGCAT 303680
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 381090495730842
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |