Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq18227 502 3e-137 seq33365 131 2e-25 >seq18227 Length=276284 Score = 502 bits (556), Expect = 3e-137 Identities = 1201/1806 (67%), Gaps = 38/1806 (2%) Strand=Plus/Minus Query 70779 ttttattttttCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAG 70838 ||| ||||| ||||| | ||| |||||||| | || || | ||| || | || Sbjct 241839 TTTAATTTTGGATTTGTCAACTGTGAACTGAATAGCGTTGGCGGCAGGTTTGGTTCTTAA 241780 Query 70839 ATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 70898 ||||||||| || || || || || | |||| | || ||||| || |||||||| Sbjct 241779 ATAGTACATTCCAGTCTTGAGCCCAATTTTCCAGGCATAGAAATGAATTGAAGTTAGTTT 241720 Query 70899 GGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCC 70958 || |||| || |||| || ||||| | || ||||| || || || || ||||| Sbjct 241719 CCCGTAATTAGGTTCTGCTACATGGATATTGAAAGATTGACTCTGGTCAATAAATGCTCC 241660 Query 70959 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AA 71017 || || |||||||||| || | ||||| | ||| ||||| | |||||| || || Sbjct 241659 TCTATCCGCAGCCATTTGAATAGTGGTCTTAACGGAAATCTCCCACACAGTTTTGTACAA 241600 Query 71018 CTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAA 71074 || || ||| |||| || | ||| |||| || || || ||| | ||||| Sbjct 241599 ATCTCT-AATTTCTTGGGGTATATTTTCAATATTTTGGATAGAACCATTGTTATGAATAA 241541 Query 71075 TCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAG 71134 | ||| || || ||||| | ||| || | | || ||| | || || | |||| Sbjct 241540 TGACATTCTTCATGTCTTCGTCCCACAAGTCAGCTTGAGTCAAATCCCTGAGTAAATGAT 241481 Query 71135 GATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACG 71194 |||| || |||||||||||||||||||| ||||| | |||||| || ||| | | Sbjct 241480 GATTCACCACTTGAAATTCTCCAGACAACACTCTTCTTTGGTAAATGTTTGATGTAAATG 241421 Query 71195 GTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 71254 |||| | ||| ||||| ||||| | ||| || || || || ||||| ||||| || || | Sbjct 241420 GTTCAAATGATTCATTGTTTCCGAGAATCTGTGCTGTAGAAGCAGTTGGCATTGGAGCTA 241361 Query 71255 CCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCC 71314 ||| || ||| | ||| ||||| | ||||||||||| || | ||| |||| Sbjct 241360 GCAAAAGTGAATTGCGAAGGCCATGCTTTGCAATTTTATCTTTGAGCTCTGTCCAGTTCC 241301 Query 71315 AAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATG 71374 ||||||| | ||| || || | ||| || Sbjct 241300 AAAGATCTGTAGGTGTTTTGTTCCACATGTCGTATTGAAGTATACCTTGACTGGCTGGAC 241241 Query 71375 ATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATG 71434 |||| | || ||| |||| ||||||||||| |||||||||||||| || || | | Sbjct 241240 TTCCTTCGTAAGTACTGTATACACCTTCTTTTTCTGCTAGTTCACAACTTGCTTCCAGAG 241181 Query 71435 CTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGT-GCTTCCGGGCTATCA 71493 ||||||| |||||||||||||| |||| | ||| | || | | |||| | || ||| Sbjct 241180 CTCCATAGTAAATGGTTTCGAATATCTGTTGATTCA-ATAATATCGCTTTCTCACTTTCA 241122 Query 71494 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGT 71553 | || | | || | ||| | ||| || | ||| ||||| |||||||| ||||| Sbjct 241121 TAGGGCAGTCTCATTAGGACAAATGTGTCGGCCAGTCCCTGAACACCAATACCAATAGGC 241062 Query 71554 CTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 71613 ||||||||| |||| ||| | | ||||||||| | ||||| | || | ||| |||||| Sbjct 241061 CTGTGTCTCATATTCGAATTCTTAGCTTCTGGTACTGGATAGAAGTTCACATCAATAATT 241002 Query 71614 TTATTGAGATTTCTGACT-ATTACTTTGACCACATCCTTTAGTTT-GAGAAAATCAAA-- 71669 || || | |||| || | || ||||| | || |||| ||| | |||| | || Sbjct 241001 TTGTTTAAATTT-TGTGTGATGACTTTTGATATTTCTTTTAATTTTGTGAAATTATAAGT 240943 Query 71670 TCTCCCATCTATTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTC 71729 | | | || ||||||||| ||||| || | || || | |||||| || || || || Sbjct 240942 TTTGTCTTCGTTTACAAACATATTCAAAGCTATTGAAGCTAAATTACATACAGCCACTTC 240883 Query 71730 ATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAA 71789 || || | |||| | ||||||||| || ||||| || || || || |||||||| Sbjct 240882 ATCTTCAGAAGTGTATTCAACAATTTCAGTACAGAGATTGCTGCATTTAATCGTTCCTAA 240823 Query 71790 ATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGT 71849 ||||| |||||| || || |||| || | || || || | || | || || ||||| Sbjct 240822 ATTTTTTTGATTGCTTTTCCTGTTGCAGGAGTCTTTGTATAACATGTATGGTGTTCCAGT 240763 Query 71850 TTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGC-----CTT-TATTATATT 71903 || | || | ||||||||| |||||||| | ||| |||| ||| | | | || Sbjct 240762 CTCTACTTGGGCTTCTATAATAGCTTTCCATAATACTTGAGCACGAACTTGTCTAACATA 240703 Query 71904 CTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGC 71963 || | |||| | |||| |||| | |||||| || ||||| |||||||| | Sbjct 240702 ATTAT-TCTCCT-----TTTCATATTTTTCATATAAGGCCTCAAACTCTTCTCCCCAGG- 240650 Query 71964 ATTGTC---TAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATT 72020 |||| || ||| || || | || || |||||||| ||| | ||||| | | Sbjct 240649 --TGTCAGTTAGTCCGGGGCAATTATGAGGGCACATCAAGCTCCAGTTTCCATTACTTTC 240592 Query 72021 TACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 72080 |||| |||||| || | |||||| ||||| | || ||| | || || | | | Sbjct 240591 AACTCTTTTCATGAATAAATCAGGTATCCACAAGGCATAAAACAATTCCCTAGCACGAAC 240532 Query 72081 CTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 72140 ||||| || || ||||||||||| ||||| || ||| | | ||||| | ||||||||| Sbjct 240531 TTCCTCTTTGCCAGTATTCTTTTTCAGATCCAGAAACTCAAATATATCCGCATGCCACGG 240472 Query 72141 TTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 72200 ||| ||||||| || | | || |||| || |||||||| ||||| | |||||||| Sbjct 240471 TTCTAAGTATACTGCAAATGCACCTGGCCTCTTATTTCCTCCTTGATCGACATATCTAGC 240412 Query 72201 GGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGA 72260 ||||||||||| ||||| | ||| || | | |||||| || ||||||| || || | Sbjct 240411 TGTGTTATTATACACTCTGAGCATGGGTACTAGACCATTCGAAACACCATTTGTTCCAGC 240352 Query 72261 GATATAGCTTCCACTGGCACGAATATTGCTAATTGA----TAGACCTATTCCCCCTGCCA 72316 ||| | || | || | || ||| ||| || | || || || || || Sbjct 240351 AATAGTTGTGCCTTTTGCTC---TAATGC-AATGGACATGCAATCCAATCCCACCAGCAG 240296 Query 72317 TTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCA 72376 ||| || || || || ||| | || | |||||||| || |||||||| || ||||| Sbjct 240295 ATTTTGATATCAAGGCACATTGCTTAAGAGTATCATATATTCCCTCTATGCTGTCATCTT 240236 Query 72377 TCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGG 72436 ||||| | || ||| || || | ||| | ||| | || || | | Sbjct 240235 TCATGGCTATTAAAAAGCATGATGATAATTGAGGTTTGGGAGTGGCAGCTGAGAAGAGAG 240176 Query 72437 TAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATT 72496 | || || || ||||| ||||||||||||||| ||| || || | ||||||| | Sbjct 240175 TTGGGCTGGCATGAGTAAAATATTTTTCAGACAGTAAATTATAAGTGTTGATAGCTGCAT 240116 Query 72497 CTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAA 72556 | |||||| ||||||||| | | |||||||| | ||| ||||| || || || Sbjct 240115 CGATATCCTCCCCATGTATTCCAATTGAAACACGCATAAGCATGTGCTGTGGCCTCTCTG 240056 Query 72557 CGATCT 72562 | |||| Sbjct 240055 CTATCT 240050 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 72766 AATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCA 72825 ||| |||| ||||||||||| |||| |||||| | || | ||| || || || | ||| Sbjct 230060 AATTGTTTCTTTGTTTCCTTCTGTAAATTTGAAATAGCCAATCTTGCAGCGAGTACTGCA 230001 Query 72826 TAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCT 72885 ||||||||||| | | || || || ||| |||| ||||| | | |||| | || Sbjct 230000 TAATCTGGATGATCAATGGTCTTGGTTGCAGCTGTTTCCGCTGCTAAATTGTCAAGCTCC 229941 Query 72886 ACCGTTGTTACTCCATTATATATTCCTTGGATAACCTT 72923 || |||||||||||| ||| ||||| |||||||| Sbjct 229940 ACTGTTGTTACTCCAGAATAAATTCCACTAATAACCTT 229903 >seq33365 Length=5281 Score = 131 bits (144), Expect = 2e-25 Identities = 166/228 (73%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||||| ||||||||| || || || | ||| ||||||||||| ||||| | Sbjct 3539 CCTCATCTCGTGAAATTAATTCATTACTGAATGTCAATCCAGGCATTAGGCCGCGCTTCT 3598 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | | ||| ||||| || ||||| ||||||||||| ||||| || || || ||||| | Sbjct 3599 TCAACCAGAATATTGATGCAAAACTGCCAGAAAAGAATATTCCCTCAACAGCTGCAAATG 3658 Query 42207 CAATAAGTCTCTCTCCATAACCGGCAC---TGTCATGTATCCACTTTTGAGCCCAATCGG 42263 | | || | ||||||| || |||| || | ||||||| |||||||||| | Sbjct 3659 CCACAATACGCTCTCCAAAAGTTGCACTCTTGCTAGCAATCCACTGCAGAGCCCAATCTG 3718 Query 42264 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 42311 ||||| | ||||| || |||| ||||| || |||||||| | | ||| Sbjct 3719 CCTTCCTCTTTACGCATGGCAGAGTTTCAATAGCATTAAACAAAAAGT 3766 Score = 123 bits (136), Expect = 3e-23 Identities = 143/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||| | | |||||| || ||||| | | |||||| || || |||| || || ||||| Sbjct 4383 ATCTCTGATATATGTGTCTATCAACAAAGAATACATCTCAGAGTGAACATTCTCCATGGC 4442 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444 || |||||||| |||||||||||||| || || || || |||||| | || | || Sbjct 4443 AATTTGAAATCCATAGAAACATCTGGCTTCAGTGACTTGCACTTCTTGGGAGAACCTCTC 4502 Query 42445 AGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 42504 | | |||||| || ||||| || ||| ||| ||||| || ||||| ||||| ||||| Sbjct 4503 CACAAGATTTTCATTGACTATCCCATCAGAGGCAGCAAAGAAGGCCAAGACATGCTTTAT 4562 Query 42505 AAAATATTTTTCG 42517 ||||| ||||| Sbjct 4563 AAAATGCCTTTCG 4575 Score = 95.1 bits (104), Expect = 2e-14 Identities = 83/102 (81%), Gaps = 1/102 (1%) Strand=Plus/Plus Query 42546 TATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACA 42605 || |||| |||| |||||||||||| || ||||| || || ||||| |||||||| |||| Sbjct 4927 TACCTTT-GATAGATCTACTTCTTCGACTGTCCAGAAAGAAGCTTCAGCCTTTTTGTACA 4985 Query 42606 TATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATC 42647 | | ||| ||||| |||||| ||| |||||||| || |||| Sbjct 4986 TTTCCCAAATATCGGGATATTTAATGGGGAAAATGACGAATC 5027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670635434527240