Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq18227 134 2e-26 seq46819 118 2e-21 seq23555 104 3e-17 seq33365 98.7 1e-15 seq9515 91.5 2e-13 >seq18227 Length=276284 Score = 134 bits (148), Expect = 2e-26 Identities = 331/502 (66%), Gaps = 0/502 (0%) Strand=Plus/Plus Query 96824 TGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGATACGTTACACAGGGCGG 96883 ||| ||||| || ||||||||| |||| ||| | | |||| || || || || Sbjct 240375 TGGTCTAGTACCCATGCTCAGAGTGTATAATAACACAGCTAGATATGTCGATCAAGGAGG 240434 Query 96884 CAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGA 96943 ||||| ||||||| || | || || ||||| ||||| ||||| ||||| | ||||| Sbjct 240435 AAATAAGAGGCCAGGTGCATTTGCAGTATACTTAGAACCGTGGCATGCGGATATATTTGA 240494 Query 96944 CTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTA 97003 ||| | || || || || ||||| || || | || || ||||| |||||||| Sbjct 240495 GTTTCTGGATCTGAAAAAGAATACTGGCAAAGAGGAAGTTCGTGCTAGGGAATTGTTTTA 240554 Query 97004 TGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCT 97063 ||| | ||| | || ||||| |||||||| | || | ||| |||||||| | Sbjct 240555 TGCCTTGTGGATACCTGATTTATTCATGAAAAGAGTTGAAAGTAATGGAAACTGGAGCTT 240614 Query 97064 AATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAA 97123 |||||||| | | ||||| || | || |||||| ||||||||||||||| Sbjct 240615 GATGTGCCCTCATAATTGCCCCGGACTAACTGACACCTGGGGAGAAGAGTTTGAGGCCTT 240674 Query 97124 GTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGAGAACTGTG 97183 || || || | ||| || || |||| ||| ||| | || | | || Sbjct 240675 ATATGAAAAATATGAAAAGGAGAATAATTATGTTAGACAAGTTCGTGCTCAAGTATTATG 240734 Query 97184 GAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATAC 97243 ||| || || | || || |||||||||||||| || ||||| | ||||| || | Sbjct 240735 GAAAGCTATTATAGAAGCCCAAGTAGAGACTGGAACACCATACATGTTATACAAAGACTC 240794 Query 97244 CGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCAC 97303 | || | || ||||| ||| | || || || || || || |||||| || || Sbjct 240795 CTGCAACAGGAAAAGCAATCAAAAAAATTTAGGAACGATTAAATGCAGCAATCTCTGTAC 240854 Query 97304 GGAAATTGTAGAGTACGCCTCT 97325 |||||||| || ||| | ||| Sbjct 240855 TGAAATTGTTGAATACACTTCT 240876 Score = 131 bits (144), Expect = 2e-25 Identities = 284/420 (68%), Gaps = 4/420 (1%) Strand=Plus/Plus Query 97844 TGAATCTTTTGAACCGTTCACGTCAAACATGTACCAGAGACGCACCCAGTCTGGAGAGTT 97903 |||||| |||||||| || || |||||||| ||||| ||| | ||||||||| || Sbjct 241407 TGAATCATTTGAACCATTTACATCAAACATTTACCAAAGAAGAGTGTTGTCTGGAGAATT 241466 Query 97904 TCAATTGACCAACGTGCACTTGGTTCGAGACTTGGAACG-GCTCAATCTGTGGAACGATG 97962 |||| || || || || | | || ||| | ||| | | ||||| |||| | Sbjct 241467 TCAAGTGGTGAATCATCATTTACTCAGGGATTTGACTCAAGCTGACT-TGTGGGACGAAG 241525 Query 97963 ACATGGCCCAGTTGATCATGTACAACAATGGGTCCATTCAAAACATTACCATCATCCCGG 98022 ||||| | | || || | |||||||| || || ||||| ||| | || || Sbjct 241526 ACATGAAGAATGTCATTATTCATAACAATGGTTCTATCCAAAATATTGAAAATATACCCC 241585 Query 98023 AAGAGTTGCGCAGAATC-TACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGAT 98081 |||| | | ||| | ||||| ||||| ||||||||| | ||||| || | Sbjct 241586 AAGAAATTAG-AGATTTGTACAAAACTGTGTGGGAGATTTCCGTTAAGACCACTATTCAA 241644 Query 98082 ATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCC 98141 |||||||| || ||||| | | ||||||||||||||||| |||||| | | || || Sbjct 241645 ATGGCTGCGGATAGAGGAGCATTTATTGACCAGAGTCAATCTTTCAATATCCATGTAGCA 241704 Query 98142 GAGCCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAG 98201 || || | ||| | | ||||| || || || || || ||||| | || |||||| Sbjct 241705 GAACCTAATTACGGGAAACTAACTTCAATTCATTTCTATGCCTGGAAAATTGGGCTCAAG 241764 Query 98202 ACGGGCATGTACTATCTGAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGAC 98261 || || ||||||||| | ||||| || | ||| |||| || || | || || || ||| Sbjct 241765 ACTGGAATGTACTATTTAAGAACCAAACCTGCCGCCAACGCTATTCAGTTCACAGTTGAC 241824 >seq46819 Length=206928 Score = 118 bits (130), Expect = 2e-21 Identities = 124/163 (76%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 126746 TACCGAGTCTGATGCCGCTTGGTCTGAGAGCGCTCTTGTCTCCGGGTACTGTGTTTTTGT 126805 |||| |||||||| ||||| || | | || || || || || || || |||||||||| Sbjct 44215 TACCTAGTCTGATTCCGCTAGGGTTCAATGCACTTTTATCACCAGGCACCGTGTTTTTGT 44156 Query 126806 TGCAAGCGATTCTGCACAGTTCGAGGATGCGCTCTGCCGGTGCTCCTGCGAGTCCCACAC 126865 | ||||| || |||||||| || || || || || ||| ||||| |||||||||| Sbjct 44155 TACAAGCTATACTGCACAGCTCAAGAATACGTTCAGCCCTAGCTCCACTGAGTCCCACAT 44096 Query 126866 TGCGCAAATCCACTAGAATCAGATGCACATCGGTACCGCCAGT 126908 |||||| |||||| || | |||||| || || |||||||| || Sbjct 44095 TGCGCATATCCACCAGCACCAGATGAACGTCTGTACCGCCTGT 44053 Score = 95.1 bits (104), Expect = 2e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 127101 TTTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGT 127160 ||||||| | ||||| || ||||||||||| ||||| | |||||||| || || || || Sbjct 43610 TTTGCGGAAGAAGATTACCCCGGCTCGAGGTCCTCTCAATGTCTTGTGGGTAGTTGTAGT 43551 Query 127161 CACAATGTCACAATACTCAAAGGGGCCAGGAATGACT 127197 ||||||||||||||| ||||| |||| || || ||| Sbjct 43550 CACAATGTCACAATATTCAAATGGGCTGGGTATCACT 43514 >seq23555 Length=75600 Score = 104 bits (114), Expect = 3e-17 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 50135 TGGCCCGTAGAGTATATAATCTACACGGCATCCTTTCCGAGTGCACTCACCGGAGCCGAT 50194 ||||| || ||||| | || |||||||| | |||||||||||| | ||||| ||||| Sbjct 56649 TGGCCAGTTGAGTACGTGATATACACGGCGACGTTTCCGAGTGCAATGACCGGTGCCGAC 56708 Query 50195 TTGACCATATTCGCAGCGTGCTTTGCCTACATTGCCGATGTGTCGACTGTGGAGAATCGC 50254 || | ||||| || | || || || || ||||| || ||||| | || |||| | Sbjct 56709 TTAGCAATATTTGCTGGATGTTTCGCGTATATTGCTGACGTGTCCTCGGTCAAGAACAGA 56768 Query 50255 ACGCTACGAGTGGGCATCTTGGATGCCGTCTACCTGAGCACGATGCCAACCGGTGTGGCG 50314 ||||| |||| || || ||||| | ||| ||| | ||||| ||||| || || | || Sbjct 56769 ACGCTCAGAGTTGGTATATTGGACGTCGTGTACTTAAGCACTATGCCTACGGGATTAGCT 56828 Query 50315 ATCGGTA 50321 || |||| Sbjct 56829 ATAGGTA 56835 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 49796 ACCGTGGAGCCTCCCATGTTTCTATACATGATGGCCTTCATGACGACCACGGTCATCGAG 49855 ||||||||||| |||||| ||||||||||||| | ||||| || | ||||| || Sbjct 48575 ACCGTGGAGCCCGTCATGTTCTTATACATGATGGCGTACATGATAACGAACGTCATAGAA 48634 Query 49856 CAGGCGTTTTACGTGTACCAAGCGTGCACCGTCAACCATGGCTACTCGCCAGAGGTGTGC 49915 ||| |||| || ||| || |||||| || |||||||| || ||| | |||||||| Sbjct 48635 CAGACGTTCTATTTGTTCCGAGCGTGTACAGTCAACCACGGATACAGCGCGGAGGTGTGT 48694 Query 49916 CACAACAT 49923 || |||| Sbjct 48695 TACGACAT 48702 >seq33365 Length=5281 Score = 98.7 bits (108), Expect = 1e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGG 125489 |||||||| || || || ||||| || |||||||| || |||||||| | || || ||| Sbjct 3662 GTGGCATTTGCAGCTGTTGAGGGAATATTCTTTTCTGGCAGTTTTGCATCAATATTCTGG 3603 Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGAC 125549 | ||||||||||| || ||||| ||| |||| |||||| || || || || ||||| Sbjct 3602 TTGAAGAAGCGCGGCCTAATGCCTGGATTGACATTCAGTAATGAATTAATTTCACGAGAT 3543 Query 125550 GAGG 125553 |||| Sbjct 3542 GAGG 3539 >seq9515 Length=717559 Score = 91.5 bits (100), Expect = 2e-13 Identities = 155/223 (70%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 70193 AATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATG 70252 ||||| | ||||| || || | ||||| || ||||| || | || | | ||||| Sbjct 249791 AATCCCAATGATAGAAGAATGCTGATGTGTTCGTGGAACCCACCTGACCTTAAGAAAATG 249732 Query 70253 GCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTAC--GATGGCAAATTGTCAT 70310 ||| | ||||| || ||||| | | ||||| || ||| ||||| || |||| | Sbjct 249731 GCATTGCCACCCTGCCACTGCCTTGTACAGTTCTAT--GTAGCTGATGGAGAACTGTCCT 249674 Query 70311 GCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCT 70370 | | ||||||||||| ||||| || ||||| | || || || ||||| || || || | Sbjct 249673 GTCTCATGTATCAGAGAAGTGCAGATATGGGATTGGGCGTTCCATTTAATATAGCCAGTT 249614 Query 70371 ATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAA 70413 ||||| | | || || ||||| || || |||||| ||||| Sbjct 249613 ATTCTCTTCTCACACATATGATAGCACATATTACCAAGCTGAA 249571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740502951701240