Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq8007 132 4e-26 seq42682 89.7 4e-13 seq11948 82.4 6e-11 >seq8007 Length=263333 Score = 132 bits (146), Expect = 4e-26 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 24873 ACCTTTTGTACATAATCGCGGCCCTTGACAAGTAGTACGTATGCGCAGCGCCCGAACCAA 24932 || |||||||| ||||| | |||||||||||| | |||||||| || || ||||||| Sbjct 11919 ACTTTTTGTACGTAATCTCTACCCTTGACAAGTTGGACGTATGCACATCGATTGAACCAA 11978 Query 24933 AGCGCGTGTTGTTGCCACGGCTCGTCATCTTGCTCCCAGTTGTCCAAACCGCCGTCGCAG 24992 | ||||| |||| ||| || |||| || | ||||| | | ||| || |||||||| Sbjct 11979 CGGGCGTGCTGTTCCCATGGTACGTCGTCGTTTTCCCAATCTTTCAAGCCACCGTCGCAA 12038 Query 24993 TAAAAACATTTGACTTTGTCGCTACGGCCGGTGTAAAAGAAGCCAGCTTCTGCAAGTTTT 25052 || || |||||| |||||||| | ||| || || || ||||||||||| || || | | Sbjct 12039 TAGAAGCATTTGGTTTTGTCGCCATTGCCTGTATAGAAAAAGCCAGCTTCGGCCAGATCT 12098 Query 25053 TCGGGCCGTTGCTTCAAACCGCGTGGCCACTCTGTAAATGT 25093 || || |||| || || | ||||| |||| ||| || Sbjct 12099 TCAGGTTTTTGCCGCATACTTCTAGGCCAGTCTGCAAACGT 12139 >seq42682 Length=462070 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| || | | ||| || | |||| ||||||||||| ||||| || ||||| | Sbjct 303906 CCTCCACGTAGACGTAAGACGAGATGCAGAGTAGACTCCTTCTGAATGTTATAATCAGAA 303847 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | | || |||||||| || || ||| ||||||| | ||| || || ||| Sbjct 303846 AGGGTTCTTCCATCTTCCAGCTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGGGGG 303787 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||| || ||||| |||||| || || | | | |||||| || ||| Sbjct 303786 ATGCCTTCCTTGTCCTGAATTTTAGCCTTCACATTTTCAATAGTATCTGAAGCCTCTACC 303727 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || || |||||||| || | ||||||||||| |||||||| Sbjct 303726 TCCAAAGTTATAGTTTTACCAGTCAGTGTTTTGACAAAGATTTGCAT 303680 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 |||| ||||| ||||| || || ||||| || | | |||| | | || |||||||| Sbjct 304110 TGCAGAGTAGATTCCTTCTGGATGTTGTAGTCAGATAGTGTTCTTCCATCTTCCAGCTGC 304051 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 || || ||| | || || | ||| || || || | ||| || || || |||||| Sbjct 304050 TTGCCAGCAAATATGAGACGCTGTTGGTCTGGAGGGATGCCTTCCTTATCCTGAATTTTA 303991 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018 ||| || | | | ||| ||| ||| || ||| | ||| |||||||| ||||| Sbjct 303990 GCTTTAACATTCTCAATAGTGTCGGAAGGTTCTACTTCCAAGGTGATGGTTTTGCCTGTC 303931 Query 19019 AAAGTTTTGACAAAAATTTGCAT 19041 |||||||||||||| || ||||| Sbjct 303930 AAAGTTTTGACAAAGATCTGCAT 303908 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 |||||||| | | || ||||| || | ||||| || || || || |||||||| | Sbjct 303222 CCTCCTCGGAGACGTAGCACCAGATGAAGAGTAGATTCTTTCTGGATGTTGTAATCAGAG 303163 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | | || || ||||||||||| ||| | ||||| | ||| || || || Sbjct 303162 AGGGTTCTTCCATCTTCTAGCTGTTTACCAGCAAAGATAAGACGCTGTTGGTCAGGAGGG 303103 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || ||||| || ||||| |||||| | | | |||||| ||| || | Sbjct 303102 ATTCCTTCTTTATCCTGGATTTTAGCTTTTACATTCTCAATTGTATCGGAAGGTTCAACT 303043 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||||| ||||||||||| | ||||| ||||| || ||||| Sbjct 303042 TCTAATGTAATAGTTTTACCTGTCAGGGTTTTAACAAAGATCTGCAT 302996 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 18812 TTTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCC 18871 || ||||| || | | || |||| ||| | ||||||||||| ||||| || ||||| Sbjct 304365 TTGCCTCCACGAAGACGTAGGACCAAGTGAAGAGTAGACTCCTTCTGAATGTTATAATCA 304306 Query 18872 GCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACG 18931 | | ||| | | || || |||||||| || ||| |||| || | ||| |||||| | Sbjct 304305 GAGAGAGTTCTTCCATCTTCTAGCTGTTTGCCAGCAAAAATTAGACGCTGTTGATCCGGG 304246 Query 18932 GGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCC 18991 || | ||| || || || |||||| || || | | | |||||| | ||| Sbjct 304245 GGGATGCCTTCCTTATCTTGAATTTTAGCCTTGACATTCTCAATAGTATCTGAGGCCTCA 304186 Query 18992 GTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || || |||||||| || | ||||||||||| |||||||| Sbjct 304185 ACCTCCAAAGTTATAGTTTTACCAGTCAGTGTTTTGACAAAGATTTGCAT 304136 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||||||||| || || || ||||| | | ||| | | || |||||||| || || Sbjct 300929 GTAGACTCCTTCTGTATGTTATAATCAGATAGAGTTCTTCCATCTTCCAGCTGCTTGCCA 300870 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || || | |||||| || ||| | ||| || ||||| |||||| ||| Sbjct 300869 GCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGAATTTTAGCTTTC 300810 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | ||| || || ||| || | |||||| ||||| || || | ||| Sbjct 300809 ACATTTTCAATAGTGTCTGAAGCCTCTACCTCCAAGGTAATTGTTTTTCCAGTGAGAGTC 300750 Query 19025 TTGACAAAAATTTGCATTTT 19044 ||||| ||||||||||| || Sbjct 300749 TTGACGAAAATTTGCATCTT 300730 >seq11948 Length=346494 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 34581 GGCGGCGTGGGACTGAACTTAACCGGCGGCAATCACATAATTATGTTGGAGCCCCACTGG 34640 ||||||||||| |||||| | ||||| ||| || | | | | || || |||||| Sbjct 265018 GGCGGCGTGGGGCTGAACCTGTGCGGCGCCAACCATCTGCTACTCCTCGACCCGCACTGG 264959 Query 34641 AACCCGCAGATCGAACTGCAGGCGCAAGACCGCATCCACCGCATGGGCCA 34690 ||||||||| |||||| ||||||||| |||||| || ||||| | || || Sbjct 264958 AACCCGCAGCTCGAACAGCAGGCGCAGGACCGCGTCTACCGCGTCGGGCA 264909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414269396062306