Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21]
60,049 sequences; 728,788,927 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq8007 132 4e-26
seq42682 89.7 4e-13
seq11948 82.4 6e-11
>seq8007
Length=263333
Score = 132 bits (146), Expect = 4e-26
Identities = 162/221 (73%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 24873 ACCTTTTGTACATAATCGCGGCCCTTGACAAGTAGTACGTATGCGCAGCGCCCGAACCAA 24932
|| |||||||| ||||| | |||||||||||| | |||||||| || || |||||||
Sbjct 11919 ACTTTTTGTACGTAATCTCTACCCTTGACAAGTTGGACGTATGCACATCGATTGAACCAA 11978
Query 24933 AGCGCGTGTTGTTGCCACGGCTCGTCATCTTGCTCCCAGTTGTCCAAACCGCCGTCGCAG 24992
| ||||| |||| ||| || |||| || | ||||| | | ||| || ||||||||
Sbjct 11979 CGGGCGTGCTGTTCCCATGGTACGTCGTCGTTTTCCCAATCTTTCAAGCCACCGTCGCAA 12038
Query 24993 TAAAAACATTTGACTTTGTCGCTACGGCCGGTGTAAAAGAAGCCAGCTTCTGCAAGTTTT 25052
|| || |||||| |||||||| | ||| || || || ||||||||||| || || | |
Sbjct 12039 TAGAAGCATTTGGTTTTGTCGCCATTGCCTGTATAGAAAAAGCCAGCTTCGGCCAGATCT 12098
Query 25053 TCGGGCCGTTGCTTCAAACCGCGTGGCCACTCTGTAAATGT 25093
|| || |||| || || | ||||| |||| ||| ||
Sbjct 12099 TCAGGTTTTTGCCGCATACTTCTAGGCCAGTCTGCAAACGT 12139
>seq42682
Length=462070
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874
||||| || | | ||| || | |||| ||||||||||| ||||| || ||||| |
Sbjct 303906 CCTCCACGTAGACGTAAGACGAGATGCAGAGTAGACTCCTTCTGAATGTTATAATCAGAA 303847
Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934
| ||| | | || |||||||| || || ||| ||||||| | ||| || || |||
Sbjct 303846 AGGGTTCTTCCATCTTCCAGCTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGGGGG 303787
Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994
| ||| || ||||| |||||| || || | | | |||||| || |||
Sbjct 303786 ATGCCTTCCTTGTCCTGAATTTTAGCCTTCACATTTTCAATAGTATCTGAAGCCTCTACC 303727
Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| | || || |||||||| || | ||||||||||| ||||||||
Sbjct 303726 TCCAAAGTTATAGTTTTACCAGTCAGTGTTTTGACAAAGATTTGCAT 303680
Score = 87.8 bits (96), Expect = 1e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898
|||| ||||| ||||| || || ||||| || | | |||| | | || ||||||||
Sbjct 304110 TGCAGAGTAGATTCCTTCTGGATGTTGTAGTCAGATAGTGTTCTTCCATCTTCCAGCTGC 304051
Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958
|| || ||| | || || | ||| || || || | ||| || || || ||||||
Sbjct 304050 TTGCCAGCAAATATGAGACGCTGTTGGTCTGGAGGGATGCCTTCCTTATCCTGAATTTTA 303991
Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018
||| || | | | ||| ||| ||| || ||| | ||| |||||||| |||||
Sbjct 303990 GCTTTAACATTCTCAATAGTGTCGGAAGGTTCTACTTCCAAGGTGATGGTTTTGCCTGTC 303931
Query 19019 AAAGTTTTGACAAAAATTTGCAT 19041
|||||||||||||| || |||||
Sbjct 303930 AAAGTTTTGACAAAGATCTGCAT 303908
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874
|||||||| | | || ||||| || | ||||| || || || || |||||||| |
Sbjct 303222 CCTCCTCGGAGACGTAGCACCAGATGAAGAGTAGATTCTTTCTGGATGTTGTAATCAGAG 303163
Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934
| ||| | | || || ||||||||||| ||| | ||||| | ||| || || ||
Sbjct 303162 AGGGTTCTTCCATCTTCTAGCTGTTTACCAGCAAAGATAAGACGCTGTTGGTCAGGAGGG 303103
Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994
| || ||||| || ||||| |||||| | | | |||||| ||| || |
Sbjct 303102 ATTCCTTCTTTATCCTGGATTTTAGCTTTTACATTCTCAATTGTATCGGAAGGTTCAACT 303043
Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| | ||||| ||||||||||| | ||||| ||||| || |||||
Sbjct 303042 TCTAATGTAATAGTTTTACCTGTCAGGGTTTTAACAAAGATCTGCAT 302996
Score = 86.0 bits (94), Expect = 5e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 18812 TTTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCC 18871
|| ||||| || | | || |||| ||| | ||||||||||| ||||| || |||||
Sbjct 304365 TTGCCTCCACGAAGACGTAGGACCAAGTGAAGAGTAGACTCCTTCTGAATGTTATAATCA 304306
Query 18872 GCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACG 18931
| | ||| | | || || |||||||| || ||| |||| || | ||| |||||| |
Sbjct 304305 GAGAGAGTTCTTCCATCTTCTAGCTGTTTGCCAGCAAAAATTAGACGCTGTTGATCCGGG 304246
Query 18932 GGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCC 18991
|| | ||| || || || |||||| || || | | | |||||| | |||
Sbjct 304245 GGGATGCCTTCCTTATCTTGAATTTTAGCCTTGACATTCTCAATAGTATCTGAGGCCTCA 304186
Query 18992 GTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| | || || |||||||| || | ||||||||||| ||||||||
Sbjct 304185 ACCTCCAAAGTTATAGTTTTACCAGTCAGTGTTTTGACAAAGATTTGCAT 304136
Score = 82.4 bits (90), Expect = 6e-11
Identities = 138/200 (69%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
||||||||||| || || || ||||| | | ||| | | || |||||||| || ||
Sbjct 300929 GTAGACTCCTTCTGTATGTTATAATCAGATAGAGTTCTTCCATCTTCCAGCTGCTTGCCA 300870
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964
||| | || || | |||||| || ||| | ||| || ||||| |||||| |||
Sbjct 300869 GCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGAATTTTAGCTTTC 300810
Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024
|| | | | ||| || || ||| || | |||||| ||||| || || | |||
Sbjct 300809 ACATTTTCAATAGTGTCTGAAGCCTCTACCTCCAAGGTAATTGTTTTTCCAGTGAGAGTC 300750
Query 19025 TTGACAAAAATTTGCATTTT 19044
||||| ||||||||||| ||
Sbjct 300749 TTGACGAAAATTTGCATCTT 300730
>seq11948
Length=346494
Score = 82.4 bits (90), Expect = 6e-11
Identities = 84/110 (76%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 34581 GGCGGCGTGGGACTGAACTTAACCGGCGGCAATCACATAATTATGTTGGAGCCCCACTGG 34640
||||||||||| |||||| | ||||| ||| || | | | | || || ||||||
Sbjct 265018 GGCGGCGTGGGGCTGAACCTGTGCGGCGCCAACCATCTGCTACTCCTCGACCCGCACTGG 264959
Query 34641 AACCCGCAGATCGAACTGCAGGCGCAAGACCGCATCCACCGCATGGGCCA 34690
||||||||| |||||| ||||||||| |||||| || ||||| | || ||
Sbjct 264958 AACCCGCAGCTCGAACAGCAGGCGCAGGACCGCGTCTACCGCGTCGGGCA 264909
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414269396062306
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |