Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq17913 104 1e-17 seq41782 96.9 2e-15 seq5822 96.9 2e-15 seq42682 87.8 1e-12 >seq17913 Length=240356 Score = 104 bits (114), Expect = 1e-17 Identities = 167/235 (71%), Gaps = 14/235 (6%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| || |||| |||||||| | |||||||| ||||| || ||||| || || Sbjct 96719 ACCACCTCTCAAACGCAGTACCAAATGTAGGGTCGACTCCTTTTGAATGTTGTAGTCTGA 96660 Query 33202 CAAATTGAGTTGGTC-ATC--CAAT-TGCTTTCCACTAAATATTAAACGTTGCTGGTCCG 33257 | | ||| ||| ||| ||| ||||| || || || | || |||||||| | Sbjct 96659 TA----GTGTTCGTCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTG 96604 Query 33258 TGGGTATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGG 33314 ||| ||||||||||| || | | | || ||| || ||| || ||||| || Sbjct 96603 GGGGAATGCCTTCTTTGTCCTGGATTTTAGC---TTTGACATTTTCGATTGTGTCTGAGG 96547 Query 33315 GTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| ||| ||||| || || ||||| || || | |||||||||||||||||||| Sbjct 96546 GTTCAACCTCCAGTGTGATGGTTTTGCCAGTCAAGGTTTTTACGAAAATTTGCAT 96492 Score = 102 bits (112), Expect = 5e-17 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| || |||| |||||||| | |||||||| ||||| || ||||| || || Sbjct 97175 ACCACCTCTCAAACGCAGTACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCTGA 97116 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | || || || || | ||||| || || || | || |||||||| | ||| Sbjct 97115 AAGTGTGCGTCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGGGG 97056 Query 33262 TATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 ||||||||||| || | | |||| ||| || ||| || ||||| ||||| Sbjct 97055 AATGCCTTCTTTGTCTTGGATTTTCGC---TTTGACATTTTCGATTGTGTCAGAGGGTTC 96999 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| || || || || ||||| || || | |||||||||||||| ||||| Sbjct 96998 AACCTCGAGTGTGATGGTTTTGCCAGTCAAGGTTTTTACGAAAATCTGCAT 96948 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| || |||| |||||||| | |||||||| ||||| || ||||| || || Sbjct 96947 ACCACCTCTCAAACGCAGTACCAAATGTAGGGTCGACTCCTTTTGGATGTTGTAGTCTGA 96888 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | || || || || | ||||| || || || | || |||||||| | || Sbjct 96887 AAGTGTGCGTCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGG 96828 Query 33262 TATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 ||||||||||| || | | | || ||| || ||| ||| || || ||||| Sbjct 96827 AATGCCTTCTTTGTCCTGGATTTTTGC---TTTGACATTTTCAATTGTATCAGAGGGTTC 96771 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| || || || || ||||| || || | |||||||||||||| ||||| Sbjct 96770 AACCTCGAGTGTGATGGTTTTGCCAGTCAAGGTTTTTACGAAAATCTGCAT 96720 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| || |||| |||||||| | |||||||| ||||| || ||||| || || Sbjct 97403 ACCACCTCTCAAACGCAGTACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCTGA 97344 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | || || || || | ||||| || || || | || |||||||| | ||| Sbjct 97343 AAGTGTGCGTCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGGGG 97284 Query 33262 TATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 ||||||||||| || | | | || ||| || ||| || ||||| ||| | Sbjct 97283 AATGCCTTCTTTGTCCTGGATTTTAGC---TTTGACATTTTCGATTGTGTCAGAGGGCTC 97227 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| || || || || ||||| || || | |||||||||||||| ||||| Sbjct 97226 AACCTCGAGCGTGATGGTTTTGCCAGTCAAGGTTTTTACGAAAATCTGCAT 97176 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| || || | |||||||| | |||||||| || || || ||||| || || Sbjct 97858 CCACCTCTCAAACGGAGTACCAAATGAAGGGTCGACTCCTTCTGAATGTTGTAGTCTGAT 97799 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | || || || || | ||||| || || || | || |||||||| | ||| Sbjct 97798 AGTGTGCGTCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGGGGA 97739 Query 33263 ATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 ||||||||||| || | | | || ||| || ||| || ||||| ||| | | Sbjct 97738 ATGCCTTCTTTGTCCTGGATTTTAGC---TTTGACATTTTCGATTGTGTCAGAGGGCTCA 97682 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || ||||| || || | |||||||||||||| ||||| Sbjct 97681 ACTTCGAGTGTGATGGTTTTGCCAGTCAAGGTTTTTACGAAAATCTGCAT 97632 >seq41782 Length=81921 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 ||| || | ||| || || |||||||| || |||||||| ||||| | | | ||| Sbjct 22883 CAATACAAGATGTAAGGTAGACTCTTTCTGGATATTGTAGTCAGATAGCGTACGGCCGTC 22824 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 ||||| ||||| ||| ||| |||||||||||||| || | || || ||||| || || Sbjct 22823 TTCCAACTGCTTGCCAGCAAAAATTAAACGTTGCTGATCTGGTGGGATTCCTTCCTTATC 22764 Query 33277 GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 |||| ||| || | | ||| |||||| | || || || || || || || Sbjct 22763 TTGAATCTTAGCTTTAACATTCTCAATAGTGTCGGAAGCTTCCACCTCGAGGGTGATAGT 22704 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || ||||| || ||||| ||||| Sbjct 22703 CTTGCCCGTTAGGGTTTTGACAAAAATCTGCAT 22671 >seq5822 Length=633359 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 ||| || | ||| || || |||||||| || |||||||| ||||| | | | ||| Sbjct 415181 CAATACAAGATGTAAGGTAGACTCTTTCTGGATATTGTAGTCAGATAGCGTACGGCCGTC 415122 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 ||||| ||||| ||| ||| |||||||||||||| || | || || ||||| || || Sbjct 415121 TTCCAACTGCTTGCCAGCAAAAATTAAACGTTGCTGATCTGGTGGGATTCCTTCCTTATC 415062 Query 33277 GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 |||| ||| || | | ||| |||||| | || || || || || || || Sbjct 415061 TTGAATCTTAGCTTTAACATTCTCAATAGTGTCGGAAGCTTCCACCTCGAGGGTGATAGT 415002 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || ||||| || ||||| ||||| Sbjct 415001 CTTGCCCGTTAGGGTTTTGACAAAAATCTGCAT 414969 >seq42682 Length=462070 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| || | || || || || | ||| | || ||||| || ||||| || |||||||| Sbjct 300960 ACCTCCACGTAGACGTAAGACAAGATGTAGAGTAGACTCCTTCTGTATGTTATAATCAGA 300901 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | | | || |||| ||||| ||| ||| || | ||| |||||||| | ||| Sbjct 300900 TAGAGTTCTTCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGGGG 300841 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 |||||||| || || ||| ||| || ||| ||| ||||| | | || Sbjct 300840 GATGCCTTCCTTGTCTTGAATTTTAGCTTTCACATTTTCAATAGTGTCTGAAGCCTCTAC 300781 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 |||| || || |||||||| || ||||| || |||||||||||||| || Sbjct 300780 CTCCAAGGTAATTGTTTTTCCAGTGAGAGTCTTGACGAAAATTTGCATCTT 300730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318544303510002