Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21]
60,049 sequences; 728,788,927 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq42682 87.8 2e-12
seq17913 87.8 2e-12
>seq42682
Length=462070
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
|||||| || | | ||| || | ||| || || |||||| |||||||| |||||||
Sbjct 303907 ACCTCCACGTAGACGTAAGACGAGATGCAGAGTAGACTCCTTCTGAATGTTATAATCAGA 303848
Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
| || | || ||||||||||| || | |||| | |||||| || || ||
Sbjct 303847 AAGGGTTCTTCCATCTTCCAGCTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGGGG 303788
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678
| | |||||||||| |||||| ||| | | | || ||||| | || |||
Sbjct 303787 GATGCCTTCCTTGTCCTGAATTTTAGCCTTCACATTTTCAATAGTATCTGAAGCCTCTAC 303728
Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||| | ||||| |||||||| || || ||||| ||||| || |||||
Sbjct 303727 CTCCAAAGTTATAGTTTTACCAGTCAGTGTTTTGACAAAGATTTGCAT 303680
Score = 82.4 bits (90), Expect = 6e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
|||||| || | | ||| || | ||| || || |||||| || ||||| |||||||
Sbjct 301855 ACCTCCACGTAGACGTAAGACAAGATGTAGAGTAGACTCCTTCTGTATGTTATAATCAGA 301796
Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
| || | || ||||||||||| || | | || | ||||||||| || ||
Sbjct 301795 TAGAGTTCTTCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGGGG 301736
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678
| | |||||||||| |||||| ||| | | | || ||||| | || |||
Sbjct 301735 GATGCCTTCCTTGTCCTGAATTTTAGCCTTCACATTTTCAATAGTATCTGAAGCCTCTAC 301676
Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||| | ||||| |||||||| || || ||||| ||||| || |||||
Sbjct 301675 CTCCAAAGTTATAGTTTTACCAGTTAGTGTTTTGACAAAGATTTGCAT 301628
>seq17913
Length=240356
Score = 87.8 bits (96), Expect = 2e-12
Identities = 174/250 (70%), Gaps = 6/250 (2%)
Strand=Plus/Minus
Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTC 48576
|| |||||||| || |||||||||||||||||| || | || ||| || | || ||
Sbjct 96472 ACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCTG-AAAGTGTGCGTCCATCTTC 96414
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
|||||||| || || | || | |||||||| || || | | |||||| ||
Sbjct 96413 AAGCTGCTTGCCAGCGAAGATAAGTCGCTGCTGGTCTGGGGGAATGCCTTCCTTATCTTG 96354
Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696
||||| ||| | | | || ||||| | | ||| ||| | ||| ||||||||
Sbjct 96353 GATTTTTGCCTTCACATTTTCAATTGTATCAGAGGGTTCCACCTCTAATGTAATGGTTTT 96294
Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG-TCTTGATCGAAGAAAGA-GT-GATG 48753
|||||||| || || ||||| |||||||| || ||| || | |||||| | || ||||
Sbjct 96293 TCCGGTGAGTGTCTTAACAAATATCTGCATGTTGATCTGGAAC-AAGAAATATGTAGATG 96235
Query 48754 TGATATTATC 48763
| |||| ||
Sbjct 96234 TTTTATTTTC 96225
Score = 84.2 bits (92), Expect = 2e-11
Identities = 146/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTC 48576
||||||||||| || ||||||||| |||||||| || | || ||| || | || ||
Sbjct 97612 ACTAAATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCTGA-AAGTGTGCGTCCATCTTC 97554
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
|||||||| ||| || | || | ||||||||||| || | | ||| ||||||
Sbjct 97553 AAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGATCTGGTGGAATGCCTTCTTTGTCCTG 97494
Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696
||||| |||| | | || || || | | ||| ||||| ||| || |||||
Sbjct 97493 GATTTTAGCTTTGACATTTTCGATTGTGTCAGAGGGCTCAACCTCGAGTGTGATAGTTTT 97434
Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| || | ||||| || |||||||||||
Sbjct 97433 GCCAGTCAAGGTTTTTACGAAAATCTGCAT 97404
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420942908494049
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |