Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq42682 87.8 2e-12 seq17913 87.8 2e-12 >seq42682 Length=462070 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| || | | ||| || | ||| || || |||||| |||||||| ||||||| Sbjct 303907 ACCTCCACGTAGACGTAAGACGAGATGCAGAGTAGACTCCTTCTGAATGTTATAATCAGA 303848 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | || | || ||||||||||| || | |||| | |||||| || || || Sbjct 303847 AAGGGTTCTTCCATCTTCCAGCTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGGGG 303788 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||||||| |||||| ||| | | | || ||||| | || ||| Sbjct 303787 GATGCCTTCCTTGTCCTGAATTTTAGCCTTCACATTTTCAATAGTATCTGAAGCCTCTAC 303728 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | ||||| |||||||| || || ||||| ||||| || ||||| Sbjct 303727 CTCCAAAGTTATAGTTTTACCAGTCAGTGTTTTGACAAAGATTTGCAT 303680 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| || | | ||| || | ||| || || |||||| || ||||| ||||||| Sbjct 301855 ACCTCCACGTAGACGTAAGACAAGATGTAGAGTAGACTCCTTCTGTATGTTATAATCAGA 301796 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | || | || ||||||||||| || | | || | ||||||||| || || Sbjct 301795 TAGAGTTCTTCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGGGG 301736 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||||||| |||||| ||| | | | || ||||| | || ||| Sbjct 301735 GATGCCTTCCTTGTCCTGAATTTTAGCCTTCACATTTTCAATAGTATCTGAAGCCTCTAC 301676 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | ||||| |||||||| || || ||||| ||||| || ||||| Sbjct 301675 CTCCAAAGTTATAGTTTTACCAGTTAGTGTTTTGACAAAGATTTGCAT 301628 >seq17913 Length=240356 Score = 87.8 bits (96), Expect = 2e-12 Identities = 174/250 (70%), Gaps = 6/250 (2%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTC 48576 || |||||||| || |||||||||||||||||| || | || ||| || | || || Sbjct 96472 ACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCTG-AAAGTGTGCGTCCATCTTC 96414 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| || || | || | |||||||| || || | | |||||| || Sbjct 96413 AAGCTGCTTGCCAGCGAAGATAAGTCGCTGCTGGTCTGGGGGAATGCCTTCCTTATCTTG 96354 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||||| ||| | | | || ||||| | | ||| ||| | ||| |||||||| Sbjct 96353 GATTTTTGCCTTCACATTTTCAATTGTATCAGAGGGTTCCACCTCTAATGTAATGGTTTT 96294 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG-TCTTGATCGAAGAAAGA-GT-GATG 48753 |||||||| || || ||||| |||||||| || ||| || | |||||| | || |||| Sbjct 96293 TCCGGTGAGTGTCTTAACAAATATCTGCATGTTGATCTGGAAC-AAGAAATATGTAGATG 96235 Query 48754 TGATATTATC 48763 | |||| || Sbjct 96234 TTTTATTTTC 96225 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTC 48576 ||||||||||| || ||||||||| |||||||| || | || ||| || | || || Sbjct 97612 ACTAAATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCTGA-AAGTGTGCGTCCATCTTC 97554 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| ||| || | || | ||||||||||| || | | ||| |||||| Sbjct 97553 AAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGATCTGGTGGAATGCCTTCTTTGTCCTG 97494 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||||| |||| | | || || || | | ||| ||||| ||| || ||||| Sbjct 97493 GATTTTAGCTTTGACATTTTCGATTGTGTCAGAGGGCTCAACCTCGAGTGTGATAGTTTT 97434 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || | ||||| || ||||||||||| Sbjct 97433 GCCAGTCAAGGTTTTTACGAAAATCTGCAT 97404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420942908494049