Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq56637 129 3e-25 seq50302 129 3e-25 seq52135 123 1e-23 seq52003 123 1e-23 seq39889 123 1e-23 seq39888 123 1e-23 seq14159 123 1e-23 seq50551 122 5e-23 seq1044 122 5e-23 seq51811 120 2e-22 seq37517 120 2e-22 seq30265 120 2e-22 seq29803 120 2e-22 seq27027 120 2e-22 seq49197 114 7e-21 >seq56637 Length=618539 Score = 129 bits (142), Expect = 3e-25 Identities = 84/92 (91%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 11441 AATAA--AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 ||||| |||| ||||||||||||||| |||||||||| ||||||||||||||||||| Sbjct 34847 AATAAGTAAAAACAAATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 34788 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||| ||||||||||||||||||||| Sbjct 34787 ACGACGCTCTAACCAACTGAGCTAATGGGCCG 34756 >seq50302 Length=430035 Score = 129 bits (142), Expect = 3e-25 Identities = 84/93 (90%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 11438 ATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 ||| | ||||||| | |||||||||||| |||||||||| |||||||||||||||||| Sbjct 383966 ATTTAAAAAAAATTATATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAG 383907 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||| ||||||||||||||||||||| Sbjct 383906 CACGACGCTCTAACCAACTGAGCTAATGGGCCG 383874 >seq52135 Length=384484 Score = 123 bits (136), Expect = 1e-23 Identities = 81/90 (90%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||||| | | |||||||||| |||||||||| ||||||||||||||||||||| Sbjct 305478 AACAAAAAATAATAATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 305419 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||| ||||||||||||||||||||| Sbjct 305418 GACGCTCTAACCAACTGAGCTAATGGGCCG 305389 >seq52003 Length=33217 Score = 123 bits (136), Expect = 1e-23 Identities = 81/90 (90%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||| | |||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 21960 AACAAAAAAGAATATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 22019 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||| ||||||||||||||||||||| Sbjct 22020 GACGCTCTAACCAACTGAGCTAATGGGCCG 22049 >seq39889 Length=2585 Score = 123 bits (136), Expect = 1e-23 Identities = 81/90 (90%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||||| | ||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 2138 AACAAAAAATAATTTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 2197 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||| ||||||||||||||||||||| Sbjct 2198 GACGCTCTAACCAACTGAGCTAATGGGCCG 2227 >seq39888 Length=3631 Score = 123 bits (136), Expect = 1e-23 Identities = 81/90 (90%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||||| | ||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 2065 AACAAAAAATAATTTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 2124 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||| ||||||||||||||||||||| Sbjct 2125 GACGCTCTAACCAACTGAGCTAATGGGCCG 2154 >seq14159 Length=244408 Score = 123 bits (136), Expect = 1e-23 Identities = 80/87 (92%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 11445 AAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| || |||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 208731 AAAAATAAATATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 208790 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| ||||||||||||||||||||| Sbjct 208791 GCTCTAACCAACTGAGCTAATGGGCCG 208817 >seq50551 Length=277909 Score = 122 bits (134), Expect = 5e-23 Identities = 83/93 (89%), Gaps = 1/93 (1%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||||||||||| | | |||||||||| |||||||||| ||||||||||||||||| Sbjct 60548 AATTAATAAAAAGT-ATCGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTA 60490 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| |||||||||||||||||||| Sbjct 60489 GCACGACGCTCTAACCAACTGAGCTAATGGGCC 60457 Score = 114 bits (126), Expect = 7e-21 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 ||| |||||||| ||| |||||||||| |||||||||| ||||||||||||||| Sbjct 57163 AATGAATAAAAAG---AATCGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTAT 57107 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||||||||||||||||||| Sbjct 57106 TAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 57072 >seq1044 Length=171551 Score = 122 bits (134), Expect = 5e-23 Identities = 78/86 (91%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| |||||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 89997 AAAAATATTATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACG 90056 Query 11505 CTCTRACCAACTGAGCTAATGGGCCG 11530 |||| ||||||||||||||||||||| Sbjct 90057 CTCTAACCAACTGAGCTAATGGGCCG 90082 >seq51811 Length=106051 Score = 120 bits (132), Expect = 2e-22 Identities = 82/92 (89%), Gaps = 2/92 (2%) Strand=Plus/Plus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 ||| | ||||| ||||||||||||| |||||||||| ||||||||||||||||||| Sbjct 54921 TTATTTAAAAA--AAATTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGC 54978 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||| ||||||||||||||||||||| Sbjct 54979 ACGACGCTCTAACCAACTGAGCTAATGGGCCG 55010 >seq37517 Length=9055 Score = 120 bits (132), Expect = 2e-22 Identities = 77/85 (91%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| | ||||||||||| |||||||||| |||||||||||||||||||||||||| Sbjct 6510 AAAATAATTTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGC 6569 Query 11506 TCTRACCAACTGAGCTAATGGGCCG 11530 ||| ||||||||||||||||||||| Sbjct 6570 TCTAACCAACTGAGCTAATGGGCCG 6594 >seq30265 Length=724830 Score = 120 bits (132), Expect = 2e-22 Identities = 80/90 (89%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||||| | | |||||||||| |||||||||| |||||||||||||||||||||| Sbjct 653920 ATAAAAAGTTATTCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACG 653861 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 ||||||| |||||||||||||||||||||| Sbjct 653860 ACGCTCTAACCAACTGAGCTAATGGGCCGT 653831 Score = 116 bits (128), Expect = 2e-21 Identities = 71/76 (93%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 317818 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 317759 Query 11515 CTGAGCTAATGGGCCG 11530 |||||||||||||||| Sbjct 317758 CTGAGCTAATGGGCCG 317743 Score = 116 bits (128), Expect = 2e-21 Identities = 71/76 (93%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 324329 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 324270 Query 11515 CTGAGCTAATGGGCCG 11530 |||||||||||||||| Sbjct 324269 CTGAGCTAATGGGCCG 324254 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 298421 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 298480 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 298481 TGAGCTAATGGGCCG 298495 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 673025 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 672966 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 672965 TGAGCTAATGGGCCG 672951 Score = 91.5 bits (100), Expect = 8e-14 Identities = 74/90 (82%), Gaps = 10/90 (11%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||||| | ||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 302877 AACAAAAAATTA--TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 302820 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||| |||||||||||||||| Sbjct 302819 GACGCT--------CTGAGCTAATGGGCCG 302798 Score = 86.0 bits (94), Expect = 3e-12 Identities = 73/90 (81%), Gaps = 10/90 (11%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||||| | ||||||||||| |||||||||| |||||||||| |||||||||| Sbjct 311556 AACAAAAAATTA--TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCATTATTAGCAC 311499 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||| |||||||||||||||| Sbjct 311498 GACGCT--------CTGAGCTAATGGGCCG 311477 >seq29803 Length=353819 Score = 120 bits (132), Expect = 2e-22 Identities = 88/102 (86%), Gaps = 1/102 (1%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||| ||| ||||| |||||| | |||||||||| |||||||||| ||||||||| Sbjct 257876 AAAAATAAAATTATTAAAAAG-CTTTGTGGCCCATGAGGGGATCGAACCCGCGACCTTCG 257818 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||||||||||||| ||||||||||||||||||||| Sbjct 257817 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCG 257776 >seq27027 Length=331930 Score = 120 bits (132), Expect = 2e-22 Identities = 80/89 (90%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTG--GCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||||| ||||| |||||||| |||||||||| |||||||||||||||||||||| Sbjct 197432 AAAAAATGTAATTGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACG 197491 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||| ||||||||||||||||||||| Sbjct 197492 ACGCTCTAACCAACTGAGCTAATGGGCCG 197520 >seq49197 Length=5807 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 5368 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 5309 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 5308 TGAGCTAATGGGCCG 5294 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261299828400724