Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq25022 370 2e-98 seq23646 150 3e-32 seq88 132 8e-27 seq40750 82.4 1e-11 >seq25022 Length=444577 Score = 370 bits (410), Expect = 2e-98 Identities = 585/844 (69%), Gaps = 14/844 (2%) Strand=Plus/Minus Query 16 ACCTTAAGGAATTCATTGA-CTCTGACTTTCTTCACTACCTTTTGATAACGCTCATACAC 74 ||| ||| ||| ||| ||| ||| ||||| ||||| ||| ||||| | ||| ||||| Sbjct 201513 ACCCTAATGAAGTCACTGAGCTCA-ACTTTTGCCACTATCTTCTGATAGCCCTCGTACAC 201455 Query 75 GTCTTTGATATCAAAGTAGACATTGGACGGGAAAAGAGTAACCAAATCCATGTGAAACTT 134 | ||| | | |||| | |||| || || | | || || ||| || ||||| Sbjct 201454 ATTTTTAGCACCGCAGTAAATATTGACTGGCAATATGTTTACTAAGTCCTCATGGAACTT 201395 Query 135 TTTTCTCTTAGAAATGTTGTCGACGTACTTAGGTAAGGTCGGATATTTCTTTGATTCCTT 194 |||| |||||||||| | || ||||||| | ||| | |||||||| | | | || | Sbjct 201394 TTTTTTCTTAGAAATATACTCAACGTACTCTTGAAAGCTAGGATATTTTTCTAAATCAAT 201335 Query 195 TACACAATCAATGAACAGTTTGTATAGTGACAAAACTCTGTCGAACTCAAGCGAATTGAT 254 ||| |||| ||| || ||||| ||||| || | |||||| | ||| || |||| || Sbjct 201334 TACGCAATTAATAAATAGTTTATATAGGGATGCTATTCTGTCAATCTCCAGGGAATCAAT 201275 Query 255 AGGTTCAAAAGTAACTTTNNNNNNNNNNNNNNNNNNNNNNNTGCTAATGACTACTTTCTT 314 || |||| |||| | || || | ||| ||||| | Sbjct 201274 AGCTTCATAAGTTATATTGATGTTATCTTTGTCGTGGTCGTTGTGGACGACAACTTTTCT 201215 Query 315 GGTATTCTTTACCAATTCCGTGTAGAAAGATTTGTCTTGGTCGATAGCAAAATAGGGACG 374 ||| || | | ||| || |||||||| || ||| ||| ||||| ||| | ||||| Sbjct 201214 AGTAATCCTGAGCAAGTCTGTGTAGAATGACTTGCTTTGATCGATGATGAAAAACGGACG 201155 Query 375 GAACGTCTTTTCACAGATATCAAACGTGCCTGTCCCAGCTTCGGATGCCTCCAAGTCACC 434 ||| ||||||||||| || ||| | || || | | || |||| || || Sbjct 201154 GAATGTCTTTTCACAAATTTCATAAGTACCAGCCG----TT--------TCCATATCTCC 201107 Query 435 CTCAAAGTGCATAAGGTGGACGAAGTCATTCAAATGAACTTTCTCCTCAAGAATATCGTC 494 ||| |||||| | ||| ||| ||||||| | ||| |||| |||||| | | |||||| Sbjct 201106 TACAATGTGCATCAAGTGAACGTAGTCATTTAGATGCACTTCCTCCTCGACTACATCGTC 201047 Query 495 ACGCAAAATTCCCTTGTGATTTAACTTTAGGTAATTCAGCTTGTATAGATTAGATGATTT 554 || | ||| |||| ||||| || || || || || || |||||||||| ||| | || Sbjct 201046 GCGGAGCATTTCCTTATGATTAAATTTGAGATAGTTGAGTTTGTATAGATGAGACGGCTT 200987 Query 555 TTCAATTTCACTGACTAGAAAACCATCTACAGTCTTGAAGATTTTCTCCAACAAATAATA 614 ||||||||||||||||||||||| | ||||||||||| |||| || | |||| || Sbjct 200986 CTCAATTTCACTGACTAGAAAACCTTTAACAGTCTTGAATATTTGCTTTAGATAATAGTA 200927 Query 615 AATTTTCTTTCTCCGTTTTTGGAtttttttCAAAGTCATTACGTAACTTAGTAGTTCTTT 674 | | | | | | |||| | || | || ||||| | ||| | ||| | ||| ||||| Sbjct 200926 GACTCTGTCTTTATGTTTATCAATCCTCTTTAAAGTTACTACATTACTAATTAGCTCTTT 200867 Query 675 TCGTTTCTCGATAGGCTTCAAATCTAGATCATAATTGAACCATGTCAAAATTTCAATCAT 734 |||||||| |||| || | ||||||||| |||| ||| | | |||||||| ||||| Sbjct 200866 ACGTTTCTCAATAGCCTCAAGATCTAGATCGTAATCGAAGTACTTTAAAATTTCGATCAT 200807 Query 735 ATAGCGCGCTACGCTATAATACCCTCTTAGCCGTTCCTGCTTGTAGTGTTGAGGATCATT 794 | | ||||||| | |||| ||||| |||||||| |||||||| | |||||||||| Sbjct 200806 GTGATGTGCTACGCCAGAATATCCTCTCAGCCGTTCGTGCTTGTACAATAGAGGATCATT 200747 Query 795 TTTAAAAATTCCTGAGGACAATTCCACGCAGTACCATAACGCAGTTGGTAGCGTTGTGCT 854 ||| ||||| | ||||||| || ||||||||||| |||||||| |||||| || || Sbjct 200746 TTTGAAAATACACGAGGACAGCTCGACGCAGTACCACAACGCAGTCAGTAGCGAAGTACT 200687 Query 855 TACT 858 | || Sbjct 200686 TTCT 200683 Score = 358 bits (396), Expect = 1e-94 Identities = 523/746 (70%), Gaps = 12/746 (2%) Strand=Plus/Minus Query 113 TAACCAAATCCATGTGAAACTTTTTTCTCTTAGAAATGTTGTCGACGTACTTAGGTAAGG 172 |||| || || ||| ||||||||| ||||| |||| | || | ||| | || ||| Sbjct 208632 TAACTAAGTCTTCGTGGAACTTTTTTTTCTTAAAAATATACTCCATGTATTCAGAAAAGC 208573 Query 173 TCGGATATTTCTTTGATTCCTTTACACAATCAATGAACAGTTTGTATAGTGACAAAACTC 232 | |||||||| ||| | || | |||| |||||| || | ||||||||| ||||||| || Sbjct 208572 TAGGATATTTTTTTAAATCTATGACACTATCAATAAATAATTTGTATAGAGACAAAATTC 208513 Query 233 TGTCGAACTCAAGCGAATTGATAGGTTCAAAAGTAACTTTNNNNNNNNNNNNNNNNNNNN 292 |||| || |||||| | | |||| || | || | || Sbjct 208512 TGTCAAATTCAAGCAATTCGATATCTTTGTAGGTGATATTGATCTTATCTTTGTCGTGGT 208453 Query 293 NNNTGCTAATGACTACTTTCTTGGTATTCTTTACCAATTCCGTGTAGAAAGATTTGTCTT 352 | |||| ||||||||||| || ||| | ||| || ||||| || ||||| || Sbjct 208452 CGTTATTAATAACTACTTTCTTCGTGTTCCTAGTCAAGTCTGTGTAAAATGATTTTCTTT 208393 Query 353 GGTCGATAGCAAAATAGGGACGGAACGTCTTTTCACAGATATCAAACGTGCCTGTCCCAG 412 | ||||||| ||| | |||||||| ||||||||||| || || || || || | | | Sbjct 208392 GATCGATAGTAAAGAATGGACGGAATGTCTTTTCACAAATTTCGAAAGTACCAG---CTG 208336 Query 413 CTTCGGATGCCTCCAAGTCACCCTCAAAGTGCATAAGGTGGACGAAGTCATTCAAATGAA 472 ||| | | |||| | ||| |||||| | ||| || | ||||| | ||| | Sbjct 208335 ATTCTG-TATCTCCTA--------CAATGTGCATCAAGTGAACATAATCATTGAGATGCA 208285 Query 473 CTTTCTCCTCAAGAATATCGTCACGCAAAATTCCCTTGTGATTTAACTTTAGGTAATTCA 532 ||| |||||| | | |||||| || | ||| |||||||||| || || || || || | Sbjct 208284 CTTCCTCCTCGACTACATCGTCGCGGAGCATTTCCTTGTGATTAAATTTGAGATAGTTGA 208225 Query 533 GCTTGTATAGATTAGATGATTTTTCAATTTCACTGACTAGAAAACCATCTACAGTCTTGA 592 | |||||||| | ||| | || ||||||||||||||||||||||| | |||||||||| Sbjct 208224 GTTTGTATAGGTGAGAGGGCTTCTCAATTTCACTGACTAGAAAACCGTTAACAGTCTTGA 208165 Query 593 AGATTTTCTCCAACAAATAATAAATTTTCTTTCTCCGTTTTTGGAtttttttCAAAGTCA 652 | ||||| | | | ||| || | ||| | | | ||| | || | || ||||||| Sbjct 208164 ATATTTTATTGACAATATAGTACACTTTATCTTTGTATTTATCAATCCTCTTTAAAGTCA 208105 Query 653 TTACGTAACTTAGTAGTTCTTTTCGTTTCTCGATAGGCTTCAAATCTAGATCATAATTGA 712 | || | | | | ||| ||||| ||||| || |||| || | ||||||||| ||||||| Sbjct 208104 TAACATTATTAATTAGCTCTTTACGTTTTTCAATAGCCTCTAGATCTAGATCGTAATTGA 208045 Query 713 ACCATGTCAAAATTTCAATCATATAGCGCGCTACGCTATAATACCCTCTTAGCCGTTCCT 772 | | |||||||||| ||||| | ||||||||| | |||| ||||| |||||||| | Sbjct 208044 AGTACTTCAAAATTTCGATCATGTGATGCGCTACGCCAGAATATCCTCTCAGCCGTTCGT 207985 Query 773 GCTTGTAGTGTTGAGGATCATTTTTAAAAATTCCTGAGGACAATTCCACGCAGTACCATA 832 |||| || | ||||||| |||| ||||| ||||||| ||| ||||||||||| | Sbjct 207984 GCTTATATAATATAGGATCACTTTTGAAAATATACGAGGACAGTTCGACGCAGTACCACA 207925 Query 833 ACGCAGTTGGTAGCGTTGTGCTTACT 858 ||||||| |||||| || ||| || Sbjct 207924 ACGCAGTCAGTAGCGAAGTACTTTCT 207899 Score = 358 bits (396), Expect = 1e-94 Identities = 577/836 (69%), Gaps = 18/836 (2%) Strand=Plus/Minus Query 16 ACCTTAAGGAATTCATTGACTCTGACTTTCTTCACTACCTTTTGATAACGCTCATACACG 75 ||| ||| ||| ||| ||| ||||| ||||| | |||||| || || || || Sbjct 215683 ACCCTAATGAAGTCACTGATGTCAACTTTGGCCACTAGTTCTTGATAGCGTTCGTATACA 215624 Query 76 TCTTTGATATCAAAGTAGACATTGGACGGGAAAAGAGTAACCAAATCCATGTGAAACTTT 135 ||| | | |||| | ||| || || || | || || || | || |||||| Sbjct 215623 ATTTTAGCACAACAGTAAATATTAGAAGGAAATATGGTTACTAAGTTTTCATGGAACTTT 215564 Query 136 TTTCTCTTAGAAATGTTGTCGACGTACTTAGGTAAGGTCGGATATTTCTTTGATTCCTTT 195 ||| || ||||||| | || || || | || ||| | |||||||| | | || || Sbjct 215563 TTTTTCCTAGAAATATACTCAACATAATCAGAAAAGCTAGGATATTTTTCAAAATCTATT 215504 Query 196 ACACAATCAATGAACAGTTTGTATAGTGACAAAACTCTGTCGAACTCAAGCGAATTGATA 255 ||||||||||| ||||| || ||||||||||||| |||||| ||||| ||||||| ||| Sbjct 215503 ACACAATCAATAAACAGCTTATATAGTGACAAAATTCTGTCAAACTCCAGCGAATCGATT 215444 Query 256 GGTTCAAAAGTAACTTTNNNNNNNNNNNNNNNNNNNNNNNTGCTAATGACTACTTTCTTG 315 ||| | || | || || | ||| ||||| | Sbjct 215443 TTTTCGTAGGTGATATTGATCTTATCTTTGTCGT------TGTGGACGACAACTTTTCTA 215390 Query 316 GTATTCTTTACCAATTCCGTGTAGAAAGATTTGTCTTGGTCGATAGCAAAATAGGGACGG 375 || || | | ||| ||||||||||| || || ||| ||||| | |||| | |||||| Sbjct 215389 GTGATCCTAAGCAAGTCCGTGTAGAATGACTTACTTTGATCGATGGTAAAAAACGGACGG 215330 Query 376 AACGTCTTTTCACAGATATCAAACGTGCCTGTCCCAGCTTCGGATGCCTCCAAGTCACCC 435 || ||||||||||| || ||||| || || | | | ||| | | || | Sbjct 215329 AATGTCTTTTCACACATTTCAAAAGTACCAGCC---GATTCTGTATCTTCTA-------- 215281 Query 436 TCAAAGTGCATAAGGTGGACGAAGTCATTCAAATGAACTTTCTCCTCAAGAATATCGTCA 495 ||| |||||| | ||| || ||||||||| ||| |||| ||||| ||| | |||||| Sbjct 215280 -CAACGTGCATCAAGTGAACATAGTCATTCAGATGCACTTCCTCCTTAAGTACATCGTCG 215222 Query 496 CGCAAAATTCCCTTGTGATTTAACTTTAGGTAATTCAGCTTGTATAGATTAGATGATTTT 555 || || ||| |||||||||| || || || || || || |||||||||| ||| | || Sbjct 215221 CGGAACATTTCCTTGTGATTAAATTTGAGATAGTTGAGTTTGTATAGATGAGAGGGCTTC 215162 Query 556 TCAATTTCACTGACTAGAAAACCATCTACAGTCTTGAAGATTTTCTCCAACAAATAATAA 615 ||||||||||||||||||||||| | | ||||||||| |||| | | || | | Sbjct 215161 TCAATTTCACTGACTAGAAAACCGTTAAGAGTCTTGAATATTTGGTTTAGGTAAAAGAAG 215102 Query 616 ATTTTCTTTCTCCGTTTTTGGAtttttttCAAAGTCATTACGTAACTTAGTAGTTCTTTT 675 | | | | | | ||||| || || | || ||| |||| || | ||| | || ||||| Sbjct 215101 ACTCTGTCTTTGCGTTTATGTATCCTCTTTAAAATCATAACATTACTAATTAACTCTTTA 215042 Query 676 CGTTTCTCGATAGGCTTCAAATCTAGATCATAATTGAACCATGTCAAAATTTCAATCATA 735 ||||| || |||| || | ||| ||||| |||| ||| | |||||||||| ||||| Sbjct 215041 CGTTTTTCAATAGCCTCGAGATCGAGATCGTAATCGAAGTACTTCAAAATTTCGATCATG 214982 Query 736 TAGCGCGCTACGCTATAATACCCTCTTAGCCGTTCCTGCTTGTAGTGTTGAGGATCATTT 795 | ||||||||| | |||| ||||| |||||||| |||||||| | |||||||| || Sbjct 214981 TGATGCGCTACGCCAGAATATCCTCTCAGCCGTTCGTGCTTGTACAATAGAGGATCACTT 214922 Query 796 TTAAAAATTCCTGAGGACAATTCCACGCAGTACCATAACGCAGTTGGTAGCGTTGT 851 || ||||| | || |||| || ||||||||||| |||||||| |||||| ||| Sbjct 214921 TTGAAAATACACGACGACAGCTCGACGCAGTACCACAACGCAGTCAGTAGCGATGT 214866 Score = 96.9 bits (106), Expect = 5e-16 Identities = 211/316 (67%), Gaps = 0/316 (0%) Strand=Plus/Plus Query 6075 AATGTTTGGAATTGAATAAAGAAATAGATTATGAAATGGTTGTTTTCCATGCATTCAATG 6134 ||||||| ||||| || || | || |||| ||| ||||||||||||| ||||||| Sbjct 206764 AATGTTTCGAATTAAACGAAAACATGCATTACAAAAGATTTGTTTTCCATGCCTTCAATG 206823 Query 6135 AAGACCCGGAAAAAATCGACCTTTTAGTAGCTGCACCTTTCTTCAAGAGCCGTTGCATCG 6194 || ||| | || || || | ||||| || ||||||||||||||| |||| | Sbjct 206824 AACACCTGAGTTCTATTGATCTCTCCGTAGCAGCGTCTTTCTTCAAGAGCCTGTGCACGG 206883 Query 6195 TTTATCACAATACCGAACTTTGTAACCGTACTCATATTTCCAAGGAGTTTGATTATGACA 6254 |||||| |||| | |||| | | || | |||| || ||| ||| | ||| ||| Sbjct 206884 TTTATCGTAATAACCAACTATTTGACAGAGTAAATATATCAGAGGCATTTAACTATAACA 206943 Query 6255 AGATCAGTAGCGACAACTTCGCAGTTGAAATGCAACAACTTATGTCTTATATTAAATTGA 6314 | |||| ||||| ||| | || | | || | | |||||||| || || | Sbjct 206944 AAATCAACGCAGACAATTTCCAAACAGAGAAAGAGGAATTGAAATCTTATATAAAGTTAA 207003 Query 6315 AGTTCATCAATAAATTCAAACGAGACGCTGATGTTTGGCGAGAAATTGAAAAATTGCATA 6374 ||||||| || || || || ||| || | || | ||||||| || ||| | | | Sbjct 207004 AGTTCATTAAAAATTTTCGACAAGATCCTTTAGCTTTGAGAGAAATAGACAAACTAAAGA 207063 Query 6375 ACCTAAGAAATCGAAT 6390 | || ||| |||| || Sbjct 207064 AGCTTAGAGATCGTAT 207079 Score = 82.4 bits (90), Expect = 1e-11 Identities = 127/179 (71%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 4138 GAGTTTTGTCCTTACCTAAACTGTTTATTGAATGTGTAAGAGAATCAAAGAAATATCCTA 4197 || ||||||| || ||| ||||||||||| ||||||| ||| | | |||||||||| Sbjct 215467 GAATTTTGTCACTATATAAGCTGTTTATTGATTGTGTAATAGATTTTGAAAAATATCCTA 215526 Query 4198 -CTTTGCGTGAGTACGTTAGGTATGTTTCCAAAAGAAAAAAGTTTCACGGGGATTTGGTT 4256 |||| | ||| || ||| |||| |||| | | ||||||||| || | | || || Sbjct 215527 GCTTTTC-TGATTATGTTGAGTATATTTCTAGGAAAAAAAAGTTCCATGAAAACTTAGTA 215585 Query 4257 ACCGTTTTTCCGTTTAATGTTTTCTTTCAAATTAAAAACGTGCATGAGCGCTATCAGGA 4315 ||| | ||||| | |||| ||| || | ||||| || | || |||||||| || Sbjct 215586 ACCATATTTCCTTCTAATATTTACTGTTGTGCTAAAATTGTATACGAACGCTATCAAGA 215644 >seq23646 Length=6130 Score = 150 bits (166), Expect = 3e-32 Identities = 194/268 (72%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| | | | ||||| ||||||||||| || || || ||||| || || Sbjct 2611 CGCGAAGCGTCACAGGAAAGTACTTCGTGATAACATCCAGGGTATTACGAAGCCGGCCAT 2670 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| |||| || | ||||| || |||||| |||| || | |||| || |||| Sbjct 2671 TCGTCGTTTGGCGCGCAGAGGTGGCGTGAAGCGTATCTCCGGTCTCATCTACGAGGAGAC 2730 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || | ||| | |||||| ||| ||| |||| ||| ||| || ||| || || Sbjct 2731 TCGCGGCGTGCTCAAGGTGTTCCTCGAGAACGTCATCCGTGACGCTGTCACCTACACAGA 2790 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | ||||| |||||| ||||||| | || || || ||||||| ||||| Sbjct 2791 ACACGCCAAGAGGAAGACCGTCACCGCCATGGACGTTGTATACGCCCTGAAACGCCAAGG 2850 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | || ||||| ||| ||||| Sbjct 2851 GCGCACCCTCTACGGTTTCGGAGGTTAA 2878 >seq88 Length=5406 Score = 132 bits (146), Expect = 8e-27 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||| ||||| || ||||||||| ||||||| | || Sbjct 2560 CTCCGTGACAACATCCAGGGCATCACGAAGCCCGCCATCCGTCGTTTGGCTCGCAGGGGC 2619 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| |||| || | | || || |||| ||| | ||| | || | ||| Sbjct 2620 GGCGTGAAGCGTATCTCCGGTCTCATATACGAGGAGACTCGCGGCGTTCTCAAAGTGTTC 2679 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| ||| || || ||| ||||||||||| || | ||||| ||| Sbjct 2680 CTCGAGAACGTGATCCGTGACGCGGTCACCTACACCGAGCACGCCAAGAGGAAGACCGTC 2739 Query 16634 ACCTCCATGGATATCGTCTATGC 16656 ||| ||||||| ||||||| || Sbjct 2740 ACCGCCATGGACGTCGTCTACGC 2762 >seq40750 Length=459517 Score = 82.4 bits (90), Expect = 1e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || |||||| |||| || | | || || |||| ||| | ||| | || | |||||| Sbjct 176258 GTGAAGCGTATCTCCGGTCTCATATACGAGGAGACTCGCGGCGTTCTCAAAGTGTTCCTC 176317 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| |||| ||| || || ||| ||||||||||| || | ||||| |||||| Sbjct 176318 GAGAACGTGATCCGTGACGCGGTCACCTACACCGAGCACGCCAAGAGGAAGACCGTCACC 176377 Query 16637 TCCATGGATATCGTCTATGC 16656 ||||||| ||||||| || Sbjct 176378 GCCATGGACGTCGTCTACGC 176397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79020296778957