Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_006641.1 Length=15959 Score E Sequences producing significant alignments: (Bits) Value seq17641 111 2e-20 seq55408 84.2 2e-12 >seq17641 Length=68962 Score = 111 bits (122), Expect = 2e-20 Identities = 125/163 (77%), Gaps = 7/163 (4%) Strand=Plus/Plus Query 15493 TTTTTGGAA--TAACTTTCAAATAGCTCTACCGATCAATTCCAAAAACTAATCAGCTCTT 15550 ||||||||| || ||| |||| | ||||| |||| ||||||| |||||||||||| || Sbjct 63 TTTTTGGAAAATATTTTTTAAATGGTTCTACTGATCGATTCCAACAACTAATCAGCTTTT 122 Query 15551 AACATCAAAAAACCACGTCGATTGCCACCAAGCTGGTC--AAAATCGGTTGATTCGTTCG 15608 | | | |||||| ||||||| || ||| | |||| ||||||||||||||| ||| Sbjct 123 AGCCT-TAAAAACGACGTCGACCACCGCCAGTCCGGTCCGGAAATCGGTTGATTCGATCG 181 Query 15609 AGAGATATCGTGAACGAAAGAAAACCGAAAAAATTGTTTTTTC 15651 ||||||||| ||| || ||| |||||| ||||||||| Sbjct 182 TGAGATATCGAAAACCAA--AAATTAAAAAAAAATGTTTTTTC 222 >seq55408 Length=12296 Score = 84.2 bits (92), Expect = 2e-12 Identities = 89/115 (77%), Gaps = 3/115 (3%) Strand=Plus/Plus Query 15500 AATAACTTTCAAATAGCTCTACCGATCAATTCCAAAAACTAATCAGCTCTTAACATCAAA 15559 |||| ||| |||| | ||||| |||| ||||||| |||||||||||| ||| | | || Sbjct 5801 AATATTTTTTAAATGGTTCTACTGATCGATTCCAACAACTAATCAGCTTTTAGCCT-TAA 5859 Query 15560 AAACCACGTCGATTGCCACCAAGCTGGTC--AAAATCGGTTGATTCGTTCGAGAG 15612 |||| ||||||| || ||| | |||| ||||||||||||||| ||| ||| Sbjct 5860 AAACGACGTCGACCACCGCCAGTCCGGTCCGGAAATCGGTTGATTCGATCGTGAG 5914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 50915024293414