Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21]
60,049 sequences; 728,788,927 total letters
Query= NC_006641.1
Length=15959
Score E
Sequences producing significant alignments: (Bits) Value
seq17641 111 2e-20
seq55408 84.2 2e-12
>seq17641
Length=68962
Score = 111 bits (122), Expect = 2e-20
Identities = 125/163 (77%), Gaps = 7/163 (4%)
Strand=Plus/Plus
Query 15493 TTTTTGGAA--TAACTTTCAAATAGCTCTACCGATCAATTCCAAAAACTAATCAGCTCTT 15550
||||||||| || ||| |||| | ||||| |||| ||||||| |||||||||||| ||
Sbjct 63 TTTTTGGAAAATATTTTTTAAATGGTTCTACTGATCGATTCCAACAACTAATCAGCTTTT 122
Query 15551 AACATCAAAAAACCACGTCGATTGCCACCAAGCTGGTC--AAAATCGGTTGATTCGTTCG 15608
| | | |||||| ||||||| || ||| | |||| ||||||||||||||| |||
Sbjct 123 AGCCT-TAAAAACGACGTCGACCACCGCCAGTCCGGTCCGGAAATCGGTTGATTCGATCG 181
Query 15609 AGAGATATCGTGAACGAAAGAAAACCGAAAAAATTGTTTTTTC 15651
||||||||| ||| || ||| |||||| |||||||||
Sbjct 182 TGAGATATCGAAAACCAA--AAATTAAAAAAAAATGTTTTTTC 222
>seq55408
Length=12296
Score = 84.2 bits (92), Expect = 2e-12
Identities = 89/115 (77%), Gaps = 3/115 (3%)
Strand=Plus/Plus
Query 15500 AATAACTTTCAAATAGCTCTACCGATCAATTCCAAAAACTAATCAGCTCTTAACATCAAA 15559
|||| ||| |||| | ||||| |||| ||||||| |||||||||||| ||| | | ||
Sbjct 5801 AATATTTTTTAAATGGTTCTACTGATCGATTCCAACAACTAATCAGCTTTTAGCCT-TAA 5859
Query 15560 AAACCACGTCGATTGCCACCAAGCTGGTC--AAAATCGGTTGATTCGTTCGAGAG 15612
|||| ||||||| || ||| | |||| ||||||||||||||| ||| |||
Sbjct 5860 AAACGACGTCGACCACCGCCAGTCCGGTCCGGAAATCGGTTGATTCGATCGTGAG 5914
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 50915024293414
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |