Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_006646.1 Length=31972 Score E Sequences producing significant alignments: (Bits) Value seq17641 109 1e-19 seq55408 95.1 2e-15 >seq17641 Length=68962 Score = 109 bits (120), Expect = 1e-19 Identities = 124/162 (77%), Gaps = 7/162 (4%) Strand=Plus/Plus Query 22893 AATCTAAAAAATAAAATTTTCAAACAAAGGTTCATTTGGAATAACTTTTT--AATGACTT 22950 ||||| ||||||||||||| ||| || || ||||||| | ||||| |||| | Sbjct 33 AATCTCCAAAATAAAATTTTTAAA--AATGTATTTTTGGAAAATATTTTTTAAATGGTTC 90 Query 22951 TACCGATCGATTCCAAAAACTAATCAGCCCTTAACCTCGAAAAACCACGTCGATTGCCAC 23010 ||| |||||||||||| ||||||||||| ||| ||| |||||| ||||||| || | Sbjct 91 TACTGATCGATTCCAACAACTAATCAGCTTTTAGCCT-TAAAAACGACGTCGACCACCGC 149 Query 23011 CGGCCCGGCCAG--AATCGGTTGATTCGTTCCGGAGATATCG 23050 | | |||| | | |||||||||||||| || ||||||||| Sbjct 150 CAGTCCGGTCCGGAAATCGGTTGATTCGATCGTGAGATATCG 191 >seq55408 Length=12296 Score = 95.1 bits (104), Expect = 2e-15 Identities = 115/151 (76%), Gaps = 8/151 (5%) Strand=Plus/Plus Query 22893 AATCTAAAAAATAAAATTTTCAAACAAAGGTTCATTTGGAATAACTTTTT--AATGACTT 22950 ||||| ||||||||||||| ||| || ||| |||| || | ||||| |||| | Sbjct 5763 AATCTCCAAAATAAAATTTTTAAA-AATTGTT--TTTGAAAAATATTTTTTAAATGGTTC 5819 Query 22951 TACCGATCGATTCCAAAAACTAATCAGCCCTTAACCTCGAAAAACCACGTCGATTGCCAC 23010 ||| |||||||||||| ||||||||||| ||| ||| |||||| ||||||| || | Sbjct 5820 TACTGATCGATTCCAACAACTAATCAGCTTTTAGCCT-TAAAAACGACGTCGACCACCGC 5878 Query 23011 CGGCCCGGCCAG--AATCGGTTGATTCGTTC 23039 | | |||| | | |||||||||||||| || Sbjct 5879 CAGTCCGGTCCGGAAATCGGTTGATTCGATC 5909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 102115931018892