Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_006648.1 Length=15158 Score E Sequences producing significant alignments: (Bits) Value seq34138 176 4e-40 >seq34138 Length=365 Score = 176 bits (194), Expect = 4e-40 Identities = 136/158 (86%), Gaps = 4/158 (3%) Strand=Plus/Minus Query 6803 TTGGACGACCGATGATAAGAAGCATCAGAGAGTGGTTTACGATCGAACAAAtttttttCG 6862 ||| ||||| ||||| |||||||||||||||| || ||||||||| |||||||||||| Sbjct 281 TTGCACGACTCATGATGCGAAGCATCAGAGAGTGCTT-ACGATCGAA-AAATTTTTTTCG 224 Query 6863 CCCCATATTTCGGCAACTATTTTTATTATTATACCCTTGTTAGTTAACGAAATCAAGATA 6922 || ||||| |||||||||||||| ||||||| ||||||||||||| | |||||||||| Sbjct 223 CCT--TATTTTGGCAACTATTTTTAGTATTATAGCCTTGTTAGTTAAAGGAATCAAGATA 166 Query 6923 TTAAGCATACTATTGTCTCGATTATTTAATGGAGATTA 6960 || ||||||||||||| ||| |||||| |||||||| Sbjct 165 TTTTGCATACTATTGTCGAGATAATTTAACGGAGATTA 128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 48353603965627