Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_006649.1 Length=32108 Score E Sequences producing significant alignments: (Bits) Value seq25129 226 6e-55 seq41404 107 4e-19 seq53994 104 5e-18 seq4816 104 5e-18 seq24163 91.5 3e-14 seq45240 89.7 1e-13 seq44248 87.8 4e-13 seq7195 87.8 4e-13 seq19488 86.0 1e-12 >seq25129 Length=56876 Score = 226 bits (250), Expect = 6e-55 Identities = 296/410 (72%), Gaps = 0/410 (0%) Strand=Plus/Minus Query 12189 TTTTCATGAATAGTGGGCAGAAAACACATTTCGTTCACCCGCTTTTCATTTCTAAGGTTA 12248 ||||| ||| || |||||| | || | || |||| ||||||||| |||| |||| Sbjct 42724 TTTTCGGAAATGGTCGGCAGATGAGACGTCTCCTTCATACGCTTTTCACCTCTATTGTTA 42665 Query 12249 TTTTTTGAGGGCAAGTGTACACAGTTGGAATAGAAAGCCAATACTTGTTCTTCAGTTCTT 12308 ||| ||||||||| ||| ||| ||||||||| |||||||||| |||| ||||| | Sbjct 42664 CTTTCTGAGGGCAAACGTATGCAGCGGGAATAGAACTCCAATACTTGCTCTTGAGTTCCT 42605 Query 12309 GAAAGTTGGTGTCGTTCACTTGCTCGATCAGCTTGCTGTACTCGTTGAAGTTCTTGATAC 12368 | ||||||||| | |||| || | ||||||| |||| ||||||| ||| | ||| | Sbjct 42604 GGAAGTTGGTGGCATTCAGCTGGGAAACCAGCTTGTTGTAGTCGTTGACGTTTTCGATGC 42545 Query 12369 TCTGGTTCACTTGGCAAATACCTTTCCCGAACTTGAAGCACGTGGTTGGTACTTCTCCCA 12428 |||| | | |||||||| ||||| ||||||||||||||||| ||| ||| | || | Sbjct 42544 TCTGATCTAGTTGGCAAACTCCTTTTCCGAACTTGAAGCACGTCGTTTCTACCGCGCCGA 42485 Query 12429 ATCTTAGATAGCTGTTTTGATAAGTCAGCTTGCAACAGGGAAGCTTCGACTTCATGCACT 12488 | | | || || ||| || |||||| ||| ||||||||||||||| ||| |||| Sbjct 42484 AACCCATCCAGGTGCTTTTGTACGTCAGCGAGCAGCAGGGAAGCTTCGACGTCAGACACT 42425 Query 12489 AAAATATAAAACAACATATTGTTCATACTTTCGATAATTAGATATCTTAAATAAATTATA 12548 || ||| | ||||| || || || | | ||||| || | |||| | | || Sbjct 42424 GGAAGATAGACGAACATGTTACGTATGCTCTAGGCGATTAGGCATTTAAAATTAGTCGTA 42365 Query 12549 GATTCAGTAAATATACTCACTGGGTTTCCTAAAGGTAGGCAAGCTGGCAA 12598 | ||| ||| |||||||||| ||||| || ||||||||| ||| || Sbjct 42364 GCGGTAGTGAATGTACTCACTGGCTTTCCCAACGGTAGGCAACTTGGTAA 42315 Score = 212 bits (234), Expect = 1e-50 Identities = 240/322 (75%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 15915 TAACATTTTCACCAATAGTGGGCAGAAAACACATTTCCTTCACCCGCTTTTCATTTCTAC 15974 || ||||||| ||| || |||||| | || | ||||||| ||||||||| |||| Sbjct 42729 TACCATTTTCGGAAATGGTCGGCAGATGAGACGTCTCCTTCATACGCTTTTCACCTCTAT 42670 Query 15975 GGTTATTTTCTGAGGACAAGTGTACACAGTTGGAATAGAAAGCCAATACTTGTTCTTCAG 16034 |||| ||||||||| ||| ||| ||| ||||||||| |||||||||| |||| || Sbjct 42669 TGTTACTTTCTGAGGGCAAACGTATGCAGCGGGAATAGAACTCCAATACTTGCTCTTGAG 42610 Query 16035 CTCTTGAAAGTTGGTCTAGTTCACTTGCTCGATCAGCTTGCTGTACTCGTTGAAGTTCTT 16094 || || |||||||| |||| || | ||||||| |||| ||||||| ||| | Sbjct 42609 TTCCTGGAAGTTGGTGGCATTCAGCTGGGAAACCAGCTTGTTGTAGTCGTTGACGTTTTC 42550 Query 16095 GATACTCTGGTTCACTTGGCAAATACCTTTCCCGAACTTGAAGCACGTGGTTGGTACTTC 16154 ||| ||||| | | |||||||| ||||| ||||||||||||||||| ||| ||| | Sbjct 42549 GATGCTCTGATCTAGTTGGCAAACTCCTTTTCCGAACTTGAAGCACGTCGTTTCTACCGC 42490 Query 16155 TCCCAATCTTAGATAGCTGTTTTGGTAAGTCAGCTTGCAGCAGGGAAGCTTCGAGTTCAG 16214 || || | | || || ||| ||| |||||| |||||||||||||||||| |||| Sbjct 42489 GCCGAAACCCATCCAGGTGCTTTTGTACGTCAGCGAGCAGCAGGGAAGCTTCGACGTCAG 42430 Query 16215 GCACTGGAAAATaaaaaaaCAT 16236 |||||||| ||| | ||||| Sbjct 42429 ACACTGGAAGATAGACGAACAT 42408 >seq41404 Length=377970 Score = 107 bits (118), Expect = 4e-19 Identities = 102/128 (80%), Gaps = 3/128 (2%) Strand=Plus/Minus Query 725 ACCTAGGCCAGTAAAATAATAAAAGTCTCAGAACACATGTAATTGTTGACCGAGGCGAAG 784 |||||| ||| ||| ||| ||| || |||||||||||||||||||| || | |||||| Sbjct 304965 ACCTAGCACAGGAAAGTAAGAAATGTATCAGAACACATGTAATTGTTTGCCAAAGCGAAG 304906 Query 785 CCAAGGTTGACAAACATGTGATCTGAGGCTTTACTT--TTTACTGGCCAAGGTGTGTATA 842 | |||| ||||| ||||||||||||||| | ||| ||||||| |||||| |||| Sbjct 304905 CTGAGGTCGACAACCATGTGATCTGAGGCGCT-CTTACTTTACTGATTAAGGTGCGTATG 304847 Query 843 CTATTTTT 850 ||||||| Sbjct 304846 TTATTTTT 304839 >seq53994 Length=363633 Score = 104 bits (114), Expect = 5e-18 Identities = 111/142 (78%), Gaps = 5/142 (4%) Strand=Plus/Plus Query 711 ATAGTATATTACATACCTAGGCCAGTAAAA-TAATAAAAGTCTCAGAACACATGTAATTG 769 |||||| ||||| ||| ||| | | ||| ||| ||| ||||||| |||| ||||||| Sbjct 198182 ATAGTACATTACTCACCGAGGACGGGGAAAGTAAGAAATATCTCAGATCACACGTAATTG 198241 Query 770 TTGACCGAGGCGAAGCCAAGGTTGACAAACATGTGATCTGAGGCTTTACTTTTTACTGGC 829 | | || | ||||||| |||||||||||||||||| || | ||||| |||||| | Sbjct 198242 TCGGCCAAAGCGAAGCTAAGGTTGACAAACATGTG-TCAGCTTTTTTAC--TTTACT-GA 198297 Query 830 CAAGGTGTGTATACTATTTTTC 851 |||| || |||||||||||||| Sbjct 198298 CAAGATGCGTATACTATTTTTC 198319 >seq4816 Length=602866 Score = 104 bits (114), Expect = 5e-18 Identities = 112/147 (76%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 788 AGGTTGACAAACATGTGATCTGAGGCTTTACTTTTT-ACTGGCCAAGGTGTGTATACTAT 846 |||| ||||| |||||||||||||||||| | || |||| | || || ||||||||| Sbjct 330632 AGGTCGACAACCATGTGATCTGAGGCTTTTTTCCTTCACTGATCGAGTTGCGTATACTAT 330573 Query 847 TTTTCTGCTCGACGTAGCCGGAATGTGGCAACTTTGTTTAGCGCAGCGGCCAGAAAGTTG 906 ||||| | ||||||| ||||| | | || |||||||||||||| ||| ||| Sbjct 330572 TTTTCCGTGCGACGTAAGCGGAAAACGAAATTTTCGTTTAGCGCAGCGGGACTAAAATTG 330513 Query 907 TCACTTTCCGGCCGGAGGGCAGAAAAT 933 || |||||| ||||||| || ||||| Sbjct 330512 TCGTTTTCCGCCCGGAGGACAAAAAAT 330486 >seq24163 Length=142819 Score = 91.5 bits (100), Expect = 3e-14 Identities = 96/124 (77%), Gaps = 3/124 (2%) Strand=Plus/Minus Query 750 TCTCAGAACACATGTAATTGTTGACCGAGGCGAAGCCAAGGTTGACAAACATGTGATCTG 809 |||||| | ||| ||||| || |||| | || ||| |||| |||| | ||||| ||| Sbjct 26850 TCTCAGTATACACGTAATCGTCAGCCGAAGTGACGCCGGGGTTAACAACCGTGTGAACTG 26791 Query 810 AGGCTTTACTTTTTACTGGCCAAGGTGTGTATACTATTTTTCTGCTCGACGTAGCCGGAA 869 || ||| ||||| ||| | ||||| ||||||||||||||||| |||||||| ||||| Sbjct 26790 AGTCTT-ACTTT--ACTCATCGAGGTGCGTATACTATTTTTCTGCCCGACGTAGGCGGAA 26734 Query 870 TGTG 873 ||| Sbjct 26733 AGTG 26730 >seq45240 Length=292100 Score = 89.7 bits (98), Expect = 1e-13 Identities = 126/174 (72%), Gaps = 6/174 (3%) Strand=Plus/Minus Query 758 CACATGTAATTGTTGACCGAGGCGAAGCCAAGGTTGACAAACATGTGATCTGAGGCTTTA 817 ||||||||||||| | | || |||||||| || || || ||| ||| |||||||||| Sbjct 107432 CACATGTAATTGTCGGCTGAAGCGAAGCCGAG---GATAACCATCTGACCTGAGGCTTT- 107377 Query 818 CTT--TTTACTGGCCAAGGTGTGTATACTATTTTTCTGCTCGACGTAGCCGGAATGTGGC 875 ||| ||||||| || || || ||||||||||||| | ||| || | | Sbjct 107376 CTTACTTTACTGATTGAGATGAGTTTACTATTTTTCTGTCCTCATTAGGCGACAAACGAA 107317 Query 876 AACTTTGTTTAGCGCAGCGGCCAGAAAGTTGTCACTTTCCGGCCGGAGGGCAGA 929 ||||||| |||| ||||||| || |||| || ||||| ||||||| |||| Sbjct 107316 AACTTTGATTAGTGCAGCGGGACAAATGTTGACATTTTCCACCCGGAGGACAGA 107263 >seq44248 Length=8111 Score = 87.8 bits (96), Expect = 4e-13 Identities = 95/124 (77%), Gaps = 3/124 (2%) Strand=Plus/Plus Query 750 TCTCAGAACACATGTAATTGTTGACCGAGGCGAAGCCAAGGTTGACAAACATGTGATCTG 809 |||||| | ||| ||||| || |||| | || ||| |||| |||| | ||||| ||| Sbjct 2754 TCTCAGTATACACGTAATCGTCAGCCGAAGTGACGCCGGGGTTTACAACCGTGTGAACTG 2813 Query 810 AGGCTTTACTTTTTACTGGCCAAGGTGTGTATACTATTTTTCTGCTCGACGTAGCCGGAA 869 || ||| ||||| ||| | ||||| || |||||||||||||| |||||||| ||||| Sbjct 2814 AGTCTT-ACTTT--ACTCATCGAGGTGCGTGTACTATTTTTCTGCCCGACGTAGGCGGAA 2870 Query 870 TGTG 873 ||| Sbjct 2871 AGTG 2874 >seq7195 Length=102581 Score = 87.8 bits (96), Expect = 4e-13 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 729 AGGCCAGTAAAATAATAAAAGTCTCAGAACACATGTAATTGTTGAC-CGAGGCGAAGCCA 787 ||| ||| ||||||| ||| |||| || ||||||| ||||| || | |||||||||| Sbjct 51042 AGGTCAGGAAAATAAGAAATATCTCGGATCACATGTGATTGTCGAGGCCAGGCGAAGCCG 51101 Query 788 AGGTTGACAAACATGTGATCTGAGG 812 |||| |||||||||||||||||||| Sbjct 51102 AGGTCGACAAACATGTGATCTGAGG 51126 >seq19488 Length=32993 Score = 86.0 bits (94), Expect = 1e-12 Identities = 85/109 (78%), Gaps = 6/109 (6%) Strand=Plus/Minus Query 710 TATAGTATATTACATACCT-----AGGCCAGTAAAATAATAAAAGTCTCAGAACACATGT 764 ||||||| |||| | || | ||| ||| ||||||| ||| |||| || ||||||| Sbjct 19229 TATAGTACATTATACACGTCACAGAGGGCAGGAAAATAAGAAATATCTCGGATCACATGT 19170 Query 765 AATTGTTGAC-CGAGGCGAAGCCAAGGTTGACAAACATGTGATCTGAGG 812 ||||| || | |||||||||| |||| ||||||||||||||||||| Sbjct 19169 GATTGTCGAGGCCAGGCGAAGCCGAGGTCCACAAACATGTGATCTGAGG 19121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 102550820685660