Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq51013 86.0 1e-12 seq38734 86.0 1e-12 seq14928 86.0 1e-12 seq2502 86.0 1e-12 seq28283 84.2 4e-12 seq55136 80.6 5e-11 >seq51013 Length=81948 Score = 86.0 bits (94), Expect = 1e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 6187 TCTTCAATAATTGACATGATTTCATTCGTGTGACTTGGGTTTCCAGCAGCTTGAGATGCC 6246 |||||||||||||| | ||||| || |||| ||| || |||||| || ||| || Sbjct 81741 TCTTCAATAATTGATAAAATTTCGTTATCGTGATTTGTATTACCAGCACTTTTAGAGGCA 81800 Query 6247 ATCAGTAGTCGCAAACGATCAACTAGCTCATTTGGATCATCCCAGTAAACATAATCC 6303 |||| || | || | |||| || |||||||||||||||||| |||| ||||||| Sbjct 81801 ATCAATAATTTTAATCTCTCAATTAACTCATTTGGATCATCCCAATAAATATAATCC 81857 >seq38734 Length=2135 Score = 86.0 bits (94), Expect = 1e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 6187 TCTTCAATAATTGACATGATTTCATTCGTGTGACTTGGGTTTCCAGCAGCTTGAGATGCC 6246 |||||||||||||| | ||||| || |||| ||| || |||||| || ||| || Sbjct 1585 TCTTCAATAATTGATAAAATTTCGTTATCGTGATTTGTATTACCAGCACTTTTAGAGGCA 1526 Query 6247 ATCAGTAGTCGCAAACGATCAACTAGCTCATTTGGATCATCCCAGTAAACATAATCC 6303 |||| || | || | |||| || |||||||||||||||||| |||| ||||||| Sbjct 1525 ATCAATAATTTTAATCTCTCAATTAACTCATTTGGATCATCCCAATAAATATAATCC 1469 >seq14928 Length=205541 Score = 86.0 bits (94), Expect = 1e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 6187 TCTTCAATAATTGACATGATTTCATTCGTGTGACTTGGGTTTCCAGCAGCTTGAGATGCC 6246 |||||||||||||| | ||||| || |||| ||| || |||||| || ||| || Sbjct 156235 TCTTCAATAATTGATAAAATTTCGTTATCGTGATTTGTATTACCAGCACTTTTAGAGGCA 156176 Query 6247 ATCAGTAGTCGCAAACGATCAACTAGCTCATTTGGATCATCCCAGTAAACATAATCC 6303 |||| || ||| | |||| || |||||||||||||||||| |||| ||||||| Sbjct 156175 ATCAATAACTTCAATCTCTCAATTAACTCATTTGGATCATCCCAATAAATATAATCC 156119 >seq2502 Length=497 Score = 86.0 bits (94), Expect = 1e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 6187 TCTTCAATAATTGACATGATTTCATTCGTGTGACTTGGGTTTCCAGCAGCTTGAGATGCC 6246 |||||||||||||| | ||||| || |||| ||| || |||||| || ||| || Sbjct 225 TCTTCAATAATTGATAAAATTTCGTTATCGTGATTTGTATTACCAGCACTTTTAGAGGCA 166 Query 6247 ATCAGTAGTCGCAAACGATCAACTAGCTCATTTGGATCATCCCAGTAAACATAATCC 6303 |||| || | || | |||| || |||||||||||||||||| |||| ||||||| Sbjct 165 ATCAATAATTTTAATCTCTCAATTAACTCATTTGGATCATCCCAATAAATATAATCC 109 >seq28283 Length=494 Score = 84.2 bits (92), Expect = 4e-12 Identities = 283/434 (65%), Gaps = 19/434 (4%) Strand=Plus/Minus Query 4472 ATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTTAGATTTAGGTTTAG 4531 ||||| ||| ||||| || ||||||| ||| | |||||||||||| | ||| | Sbjct 436 ATAAAGCTAAATATGTAATCCACTATAGGAATCTTAAACAATGTTTATCCATGGGTCTTA 377 Query 4532 TTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGAC--TGGCTCAAATCATA 4589 || || || || || ||| | |||||| ||| || | ||| | ||| ||| Sbjct 376 AGCTAAAAAAGATTCATAGAGTGCTAAAATTTTGTCAA--AGTCCGTGGTTGAAACAATA 319 Query 4590 TATCGATAAAAATAC--CGCATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTT 4647 ||| ||| ||| || ||| ||| ||| ||| || | ||| || |||||| | ||| Sbjct 318 TATTGATTTAAACACTTCGC-TGC-GAACCTCAGCAAAAACTGATTTTGAAAAAGATTTT 261 Query 4648 TATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTACGAAAATATAAA 4707 |||||||| |||||||| | | |||||||| || ||||| ||| | |||| Sbjct 260 TATAAATTGATGAATAACTCAATATTTGGAAAAACCATGGAAAATATTGAAAAAAGGGTT 201 Query 4708 GATATATATTTAAGAACAAAGTGGCAAAGT-------CAATACAATGTATCGGA---TTT 4757 || || | ||| |||| ||||||||| | ||| ||| || | || | | Sbjct 200 GACGTAAAATTAGTAACACAGTGGCAAAATTGTGGTAAAATTCAAGGT-GCTGAGTCTCT 142 Query 4758 AGTATGTAGACCAAACTTCCACAGCCTTACAATTTTTGATGAGGATATGGTTATAGTTGA 4817 || | || | |||||||| | | | ||| ||| | | ||| || | Sbjct 141 CATAGCCCGCCCGGAATTCCACAGTATGTCTGTATTTTCTGAAAACTTAGTTGCTATTCA 82 Query 4818 ACTTAAAAAAGCTAGAGTTTGCTTCAACAAGCCGATCTATGTAGGGTTTAGTATATTAGA 4877 |||| ||||| | | | ||| | || || || || ||| |||| ||||| |||||||| Sbjct 81 ACTTCAAAAAACAAAACTTTTGTATAATAAACCCATATATTTAGGATTTAGCATATTAGA 22 Query 4878 TTTATCTAAAATTT 4891 | ||||||| |||| Sbjct 21 TATATCTAAGATTT 8 >seq55136 Length=25951 Score = 80.6 bits (88), Expect = 5e-11 Identities = 88/115 (77%), Gaps = 3/115 (3%) Strand=Plus/Minus Query 6187 TCTTCAATAATTGACATGATTTCATTCGTGTGACTTGGGTTTCCAGCAGCTTGAGATGCC 6246 |||||||||||||| | ||||| || |||| ||| || |||||| |||||| || Sbjct 5572 TCTTCAATAATTGATAAAATTTCGTTATCGTGATTTGTATTACCAGCA-CTTGAG--GCA 5516 Query 6247 ATCAGTAGTCGCAAACGATCAACTAGCTCATTTGGATCATCCCAGTAAACATAAT 6301 |||| || | || | |||| || |||||||||||||||||| |||| ||||| Sbjct 5515 ATCAATAATTTTAATCTCTCAATTAACTCATTTGGATCATCCCAATAAATATAAT 5461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97904536231146