Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21]
60,049 sequences; 728,788,927 total letters
Query= NC_006659.1
Length=41573
Score E
Sequences producing significant alignments: (Bits) Value
seq25129 131 4e-26
seq17641 98.7 3e-16
seq55408 84.2 6e-12
>seq25129
Length=56876
Score = 131 bits (144), Expect = 4e-26
Identities = 173/235 (74%), Gaps = 4/235 (2%)
Strand=Plus/Minus
Query 6310 GAGTAGAATTCCAATACTTGGTCTTTAGCTCCTCGAAGTTGGATTCGTTCCGCTGTTTGA 6369
|| ||||| ||||||||||| |||| || |||| |||||||| | ||| |||| |
Sbjct 42637 GAATAGAACTCCAATACTTGCTCTTGAGTTCCTGGAAGTTGGTGGCATTCAGCTGGGAAA 42578
Query 6370 TCAGCTTGGTGTATTCGTTGAAGTTCTCAATGCTGCTG-TTTATTTGGCAAATGCCTTTC 6428
||||||| |||| ||||||| ||| || ||||| ||| | || |||||||| |||||
Sbjct 42577 CCAGCTTGTTGTAGTCGTTGACGTTTTCGATGCT-CTGATCTAGTTGGCAAACTCCTTTT 42519
Query 6429 CCGAATTCGAAGCAGGTGGTTGGTA-CACTTCGCAACCTTAAATAGCTGTTTTGATAAGT 6487
||||| | |||||| || ||| || | | || |||| | || || ||| || ||
Sbjct 42518 CCGAACTTGAAGCACGTCGTTTCTACCGCGCCGAAACC-CATCCAGGTGCTTTTGTACGT 42460
Query 6488 CAGCATGTAGCAAGGAAGCTTTGACTTTACGCACTGGAAAATAAAAGAACATATT 6542
|||| | |||| |||||||| ||| | | |||||||| ||| | |||||| ||
Sbjct 42459 CAGCGAGCAGCAGGGAAGCTTCGACGTCAGACACTGGAAGATAGACGAACATGTT 42405
>seq17641
Length=68962
Score = 98.7 bits (108), Expect = 3e-16
Identities = 116/154 (75%), Gaps = 5/154 (3%)
Strand=Plus/Plus
Query 40132 AATAACTTTTAAACGGCTTTACCGATTAATTCCAAAAACTAATTAGCTCTTAACATTAAT 40191
|||| ||||||| || | ||| ||| ||||||| ||||||| |||| ||| | ||||
Sbjct 72 AATATTTTTTAAATGGTTCTACTGATCGATTCCAACAACTAATCAGCTTTTAGCCTTAA- 130
Query 40192 AAACCACGTCGATTGCTGTCAGCCCGGTCA--ACATCGGTTGATTCGTTCGTGAGTTATC 40249
|||| ||||||| | | ||| |||||| | ||||||||||||| ||||||| ||||
Sbjct 131 AAACGACGTCGACCACCGCCAGTCCGGTCCGGAAATCGGTTGATTCGATCGTGAGATATC 190
Query 40250 GTTGACGAAAGAAAACCGAAAAAAGTGTTTTTTC 40283
| || || ||| |||||| |||||||||
Sbjct 191 GAAAACCAA--AAATTAAAAAAAAATGTTTTTTC 222
>seq55408
Length=12296
Score = 84.2 bits (92), Expect = 6e-12
Identities = 89/115 (77%), Gaps = 3/115 (3%)
Strand=Plus/Plus
Query 40132 AATAACTTTTAAACGGCTTTACCGATTAATTCCAAAAACTAATTAGCTCTTAACATTAAT 40191
|||| ||||||| || | ||| ||| ||||||| ||||||| |||| ||| | ||||
Sbjct 5801 AATATTTTTTAAATGGTTCTACTGATCGATTCCAACAACTAATCAGCTTTTAGCCTTAA- 5859
Query 40192 AAACCACGTCGATTGCTGTCAGCCCGGTCA--ACATCGGTTGATTCGTTCGTGAG 40244
|||| ||||||| | | ||| |||||| | ||||||||||||| |||||||
Sbjct 5860 AAACGACGTCGACCACCGCCAGTCCGGTCCGGAAATCGGTTGATTCGATCGTGAG 5914
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 132817222861830
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |