Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_006659.1 Length=41573 Score E Sequences producing significant alignments: (Bits) Value seq25129 131 4e-26 seq17641 98.7 3e-16 seq55408 84.2 6e-12 >seq25129 Length=56876 Score = 131 bits (144), Expect = 4e-26 Identities = 173/235 (74%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 6310 GAGTAGAATTCCAATACTTGGTCTTTAGCTCCTCGAAGTTGGATTCGTTCCGCTGTTTGA 6369 || ||||| ||||||||||| |||| || |||| |||||||| | ||| |||| | Sbjct 42637 GAATAGAACTCCAATACTTGCTCTTGAGTTCCTGGAAGTTGGTGGCATTCAGCTGGGAAA 42578 Query 6370 TCAGCTTGGTGTATTCGTTGAAGTTCTCAATGCTGCTG-TTTATTTGGCAAATGCCTTTC 6428 ||||||| |||| ||||||| ||| || ||||| ||| | || |||||||| ||||| Sbjct 42577 CCAGCTTGTTGTAGTCGTTGACGTTTTCGATGCT-CTGATCTAGTTGGCAAACTCCTTTT 42519 Query 6429 CCGAATTCGAAGCAGGTGGTTGGTA-CACTTCGCAACCTTAAATAGCTGTTTTGATAAGT 6487 ||||| | |||||| || ||| || | | || |||| | || || ||| || || Sbjct 42518 CCGAACTTGAAGCACGTCGTTTCTACCGCGCCGAAACC-CATCCAGGTGCTTTTGTACGT 42460 Query 6488 CAGCATGTAGCAAGGAAGCTTTGACTTTACGCACTGGAAAATAAAAGAACATATT 6542 |||| | |||| |||||||| ||| | | |||||||| ||| | |||||| || Sbjct 42459 CAGCGAGCAGCAGGGAAGCTTCGACGTCAGACACTGGAAGATAGACGAACATGTT 42405 >seq17641 Length=68962 Score = 98.7 bits (108), Expect = 3e-16 Identities = 116/154 (75%), Gaps = 5/154 (3%) Strand=Plus/Plus Query 40132 AATAACTTTTAAACGGCTTTACCGATTAATTCCAAAAACTAATTAGCTCTTAACATTAAT 40191 |||| ||||||| || | ||| ||| ||||||| ||||||| |||| ||| | |||| Sbjct 72 AATATTTTTTAAATGGTTCTACTGATCGATTCCAACAACTAATCAGCTTTTAGCCTTAA- 130 Query 40192 AAACCACGTCGATTGCTGTCAGCCCGGTCA--ACATCGGTTGATTCGTTCGTGAGTTATC 40249 |||| ||||||| | | ||| |||||| | ||||||||||||| ||||||| |||| Sbjct 131 AAACGACGTCGACCACCGCCAGTCCGGTCCGGAAATCGGTTGATTCGATCGTGAGATATC 190 Query 40250 GTTGACGAAAGAAAACCGAAAAAAGTGTTTTTTC 40283 | || || ||| |||||| ||||||||| Sbjct 191 GAAAACCAA--AAATTAAAAAAAAATGTTTTTTC 222 >seq55408 Length=12296 Score = 84.2 bits (92), Expect = 6e-12 Identities = 89/115 (77%), Gaps = 3/115 (3%) Strand=Plus/Plus Query 40132 AATAACTTTTAAACGGCTTTACCGATTAATTCCAAAAACTAATTAGCTCTTAACATTAAT 40191 |||| ||||||| || | ||| ||| ||||||| ||||||| |||| ||| | |||| Sbjct 5801 AATATTTTTTAAATGGTTCTACTGATCGATTCCAACAACTAATCAGCTTTTAGCCTTAA- 5859 Query 40192 AAACCACGTCGATTGCTGTCAGCCCGGTCA--ACATCGGTTGATTCGTTCGTGAG 40244 |||| ||||||| | | ||| |||||| | ||||||||||||| ||||||| Sbjct 5860 AAACGACGTCGACCACCGCCAGTCCGGTCCGGAAATCGGTTGATTCGATCGTGAG 5914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132817222861830