Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_006660.1 Length=20197 Score E Sequences producing significant alignments: (Bits) Value seq17641 104 3e-18 seq55408 89.7 7e-14 >seq17641 Length=68962 Score = 104 bits (114), Expect = 3e-18 Identities = 103/130 (79%), Gaps = 5/130 (4%) Strand=Plus/Minus Query 9899 CGATATCTCTCGAACGAATCAACCGATTTT--GACCAGCTTGGTGGCAATCGACGTGGTT 9956 ||||||||| ||| ||||||||||||||| |||| | ||| || ||||||| ||| Sbjct 191 CGATATCTCACGATCGAATCAACCGATTTCCGGACCGGACTGGCGGTGGTCGACGTCGTT 132 Query 9957 TTTTGATGTTAAGAGCTGATTAGTTTTTGGAATTGATCGGTAGAGCTATTTAAAAGTTA- 10015 ||| | | ||| |||||||||||| ||||||| |||| ||||| | |||||||| || Sbjct 131 TTTA-AGGCTAAAAGCTGATTAGTTGTTGGAATCGATCAGTAGAACCATTTAAAAAATAT 73 Query 10016 -TTCCAAAAA 10024 ||||||||| Sbjct 72 TTTCCAAAAA 63 >seq55408 Length=12296 Score = 89.7 bits (98), Expect = 7e-14 Identities = 90/115 (78%), Gaps = 3/115 (3%) Strand=Plus/Minus Query 9905 CTCTCGAACGAATCAACCGATTTT--GACCAGCTTGGTGGCAATCGACGTGGTTTTTTGA 9962 ||| ||| ||||||||||||||| |||| | ||| || ||||||| |||||| | Sbjct 5914 CTCACGATCGAATCAACCGATTTCCGGACCGGACTGGCGGTGGTCGACGTCGTTTTTA-A 5856 Query 9963 TGTTAAGAGCTGATTAGTTTTTGGAATTGATCGGTAGAGCTATTTAAAAGTTATT 10017 | ||| |||||||||||| ||||||| |||| ||||| | |||||||| |||| Sbjct 5855 GGCTAAAAGCTGATTAGTTGTTGGAATCGATCAGTAGAACCATTTAAAAAATATT 5801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 64467208249920