Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_006661.1 Length=11186 Score E Sequences producing significant alignments: (Bits) Value seq41404 113 3e-21 seq28803 98.7 7e-17 seq53994 93.3 3e-15 seq19488 93.3 3e-15 seq24163 91.5 1e-14 seq7195 89.7 4e-14 seq44248 87.8 1e-13 seq49259 86.0 4e-13 seq6234 84.2 2e-12 seq4816 84.2 2e-12 seq27202 82.4 5e-12 >seq41404 Length=377970 Score = 113 bits (124), Expect = 3e-21 Identities = 102/127 (80%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 6715 ACCTAGGGCAATAAAGTAAGAAATGTCTCAGATCACATGTAATTGTTTACTGAGGCGAAG 6774 |||||| || |||||||||||||| ||||| ||||||||||||||| | | |||||| Sbjct 304965 ACCTAGCACAGGAAAGTAAGAAATGTATCAGAACACATGTAATTGTTTGCCAAAGCGAAG 304906 Query 6775 CCGAGGTCAACAAACATGTGGTCTGAGGCTTTCTTA-TTTACTGTCCAAGATTTGTATGC 6833 | |||||| |||| |||||| |||||||| ||||| ||||||| ||| | ||||| Sbjct 304905 CTGAGGTCGACAACCATGTGATCTGAGGCGCTCTTACTTTACTGATTAAGGTGCGTATGT 304846 Query 6834 GATTTTT 6840 |||||| Sbjct 304845 TATTTTT 304839 >seq28803 Length=167045 Score = 98.7 bits (108), Expect = 7e-17 Identities = 136/191 (71%), Gaps = 11/191 (6%) Strand=Plus/Minus Query 10981 CACTGCGGTAAACGAAATTGCCACATTCCGGCTACGTCGGGCAGAAAAATAGT------- 11033 ||||| | ||| ||||| | | ||||| ||||||||| ||||||| |||| Sbjct 152635 CACTGAGCTAAGCGAAAATTTCGTTTTCCGCCTACGTCGGACAGAAAAGTAGTTAGTAGG 152576 Query 11034 --ATACACACCTTGGCCAGTAAAAAGTAAACCCTCAGACCACATGTTTGTCAACCTCGAC 11091 |||| |||||| |||||||| ||| ||||| | |||| ||||||| || Sbjct 152575 TAATACGCACCTTAAACAGTAAAATAAAAAGCCTCAT--CTCATGATTGTCAATTTCAGA 152518 Query 11092 TTCACCTCGGCCAACAATCACATGTGATCTGAGACtttttttATTTTACTGGCCTAGGTA 11151 | ||| | | || |||| ||||||||||| ||||| |||| || ||| || ||||||| Sbjct 152517 TACACTTTGACCGACAACCACATGTGATCAGAGACATTTTATACTTTCTTGCCCTAGGTG 152458 Query 11152 TGTGATATACT 11162 || ||||||| Sbjct 152457 CGTAATATACT 152447 >seq53994 Length=363633 Score = 93.3 bits (102), Expect = 3e-15 Identities = 110/144 (76%), Gaps = 5/144 (3%) Strand=Plus/Minus Query 11024 GAAAAATAGTATACACACCTTGGCCAGTAAAAAGTAAACCCTCAGACCACATGTTTGTCA 11083 |||||||||||||| || |||| | |||||| ||||| | ||| |||||||||||| Sbjct 198319 GAAAAATAGTATACGCATCTTGTC-AGTAAA--GTAAAAAAGCTGAC-ACATGTTTGTCA 198264 Query 11084 ACCTCGACTTCACCTCGGCCAACAATCACATGTGATCTGAGACtttttttA-TTTTACTG 11142 |||| |||| | | |||| ||||| || |||||||||||| ||| ||| ||| | | Sbjct 198263 ACCTTAGCTTCGCTTTGGCCGACAATTACGTGTGATCTGAGATATTTCTTACTTTCCCCG 198204 Query 11143 GCCTAGGTATGTGATATACTATTT 11166 ||| ||| || || |||||||| Sbjct 198203 TCCTCGGTGAGTAATGTACTATTT 198180 Score = 86.0 bits (94), Expect = 4e-13 Identities = 93/119 (78%), Gaps = 6/119 (5%) Strand=Plus/Plus Query 6727 AAAGTAAGAAATGTCTCAGATCACATGTAATTGTTTACTGAGGCGAAGCCGAGGTCAACA 6786 |||||||||||| |||||||||||| |||||||| | | ||||||| |||| ||| Sbjct 198209 AAAGTAAGAAATATCTCAGATCACACGTAATTGTCGGCCAAAGCGAAGCTAAGGTTGACA 198268 Query 6787 AACATGTGGTCTGAGGCTTTCTTA-TTTACTGTCCAAGATTTGTATGCGATTTTTCTTC 6844 ||||||| ||| ||||| ||| ||||||| |||||| |||| | ||||||| || Sbjct 198269 AACATGT-GTC---AGCTTTTTTACTTTACTG-ACAAGATGCGTATACTATTTTTCATC 198322 >seq19488 Length=32993 Score = 93.3 bits (102), Expect = 3e-15 Identities = 79/95 (83%), Gaps = 3/95 (3%) Strand=Plus/Minus Query 6719 AGGGCAATAAAGTAAGAAATGTCTCAGATCACATGTAATTGTTTACTG-AGGCGAAGCCG 6777 |||||| ||| |||||||| |||| |||||||||| ||||| | ||||||||||| Sbjct 19205 AGGGCAGGAAAATAAGAAATATCTCGGATCACATGTGATTGTCGAGGCCAGGCGAAGCCG 19146 Query 6778 AGGTCAACAAACATGTGGTCTGAGG--CTTTCTTA 6810 ||||| ||||||||||| ||||||| |||||||| Sbjct 19145 AGGTCCACAAACATGTGATCTGAGGATCTTTCTTA 19111 Score = 82.4 bits (90), Expect = 5e-12 Identities = 70/85 (82%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 11063 CCTCAGACCACATGTTTGTCAACCTCGACTTCACCTCGGC-CAACAATCACATGTGATCT 11121 ||||||| ||||||||||| |||||| |||| ||| | | | |||||||||||||||| Sbjct 19121 CCTCAGATCACATGTTTGTGGACCTCGGCTTCGCCTGGCCTCGACAATCACATGTGATCC 19180 Query 11122 GAGACtttttttATTTTACTGGCCT 11146 |||| ||| ||||||| ||| ||| Sbjct 19181 GAGATATTTCTTATTTTCCTGCCCT 19205 >seq24163 Length=142819 Score = 91.5 bits (100), Expect = 1e-14 Identities = 102/134 (76%), Gaps = 3/134 (2%) Strand=Plus/Plus Query 10992 ACGAAATTGCCACATTCCGGCTACGTCGGGCAGAAAAATAGTATACACACCTTGGCCAGT 11051 |||||| | ||| ||||| |||||||||||||||||||||||||| ||||| | ||| Sbjct 26720 ACGAAAATTTCACTTTCCGCCTACGTCGGGCAGAAAAATAGTATACGCACCTCGATGAGT 26779 Query 11052 AAAAAGTAAACCCTCAGACCACATGTTTGTCAACCTCGACTTCACCTCGGCCAACAATCA 11111 ||||| || ||||| |||| | |||| |||| || | |||| ||||| || || | Sbjct 26780 --AAAGT-AAGACTCAGTTCACACGGTTGTTAACCCCGGCGTCACTTCGGCTGACGATTA 26836 Query 11112 CATGTGATCTGAGA 11125 | ||| |||||| Sbjct 26837 CGTGTATACTGAGA 26850 >seq7195 Length=102581 Score = 89.7 bits (98), Expect = 4e-14 Identities = 78/95 (82%), Gaps = 3/95 (3%) Strand=Plus/Plus Query 6719 AGGGCAATAAAGTAAGAAATGTCTCAGATCACATGTAATTGTTTACTG-AGGCGAAGCCG 6777 ||| || ||| |||||||| |||| |||||||||| ||||| | ||||||||||| Sbjct 51042 AGGTCAGGAAAATAAGAAATATCTCGGATCACATGTGATTGTCGAGGCCAGGCGAAGCCG 51101 Query 6778 AGGTCAACAAACATGTGGTCTGAGG--CTTTCTTA 6810 ||||| ||||||||||| ||||||| |||||||| Sbjct 51102 AGGTCGACAAACATGTGATCTGAGGATCTTTCTTA 51136 Score = 87.8 bits (96), Expect = 1e-13 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 11063 CCTCAGACCACATGTTTGTCAACCTCGACTTCACCTCGGC-CAACAATCACATGTGATCT 11121 ||||||| |||||||||||| |||||| |||| ||| | | | |||||||||||||||| Sbjct 51126 CCTCAGATCACATGTTTGTCGACCTCGGCTTCGCCTGGCCTCGACAATCACATGTGATCC 51067 Query 11122 GAGACtttttttATTTTACTGGCCT 11146 |||| ||| ||||||| ||| ||| Sbjct 51066 GAGATATTTCTTATTTTCCTGACCT 51042 >seq44248 Length=8111 Score = 87.8 bits (96), Expect = 1e-13 Identities = 101/134 (75%), Gaps = 3/134 (2%) Strand=Plus/Minus Query 10992 ACGAAATTGCCACATTCCGGCTACGTCGGGCAGAAAAATAGTATACACACCTTGGCCAGT 11051 |||||| | ||| ||||| ||||||||||||||||||||||| || ||||| | ||| Sbjct 2884 ACGAAAATTTCACTTTCCGCCTACGTCGGGCAGAAAAATAGTACACGCACCTCGATGAGT 2825 Query 11052 AAAAAGTAAACCCTCAGACCACATGTTTGTCAACCTCGACTTCACCTCGGCCAACAATCA 11111 ||||| || ||||| |||| | |||| |||| || | |||| ||||| || || | Sbjct 2824 --AAAGT-AAGACTCAGTTCACACGGTTGTAAACCCCGGCGTCACTTCGGCTGACGATTA 2768 Query 11112 CATGTGATCTGAGA 11125 | ||| |||||| Sbjct 2767 CGTGTATACTGAGA 2754 >seq49259 Length=157551 Score = 86.0 bits (94), Expect = 4e-13 Identities = 75/92 (82%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 6719 AGGGCAATAAAGTAAGAAATGTCTCAGATCACATGTAATTGTTTACTGAGGCGAAGCCGA 6778 |||||| |||||| |||||||||| ||||| ||| |||||| | || ||||||| || Sbjct 56972 AGGGCAGGAAAGTAGGAAATGTCTCTGATCATATGAAATTGTCCGCCGAAGCGAAGCTGA 56913 Query 6779 GGTCAACAAACATGTGGTCTGAGGCTTTCTTA 6810 | || |||| |||||| || |||||||||||| Sbjct 56912 G-TCGACAATCATGTGATCCGAGGCTTTCTTA 56882 >seq6234 Length=964271 Score = 84.2 bits (92), Expect = 2e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 6715 ACCTAGGGCAATAAAGTAAGAAATGTCTCAGATCACATGTAATTGTTTACTGAGGCGAAG 6774 ||| |||| |||||||||||||||| ||||||||||||| |||||| || || |||||| Sbjct 666527 ACCGAGGGAAATAAAGTAAGAAATGCCTCAGATCACATGCAATTGTGGACCGAAGCGAAG 666468 Query 6775 CCGAGGTCAACAAA 6788 | |||||| |||| Sbjct 666467 CTGAGGTCTGCAAA 666454 >seq4816 Length=602866 Score = 84.2 bits (92), Expect = 2e-12 Identities = 108/148 (73%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 10983 CTGCGGTAAACGAAATTGCCACATTCCGGCTACGTCGGGCAGAAAAATAGTATACACACC 11042 ||||| ||||||||| | | ||||| ||||||| | |||||||||||||| || | Sbjct 330527 CTGCGCTAAACGAAAATTTCGTTTTCCGCTTACGTCGCACGGAAAAATAGTATACGCAAC 330586 Query 11043 TTGGCCAGT-AAAAAGTAAACCCTCAGACCACATGTTTGTCAACCTCGACTTCACCTCGG 11101 | | |||| || | ||| ||||||| |||||| ||||| ||||| ||||| | | Sbjct 330587 TCGATCAGTGAAGGAAAAAAGCCTCAGATCACATGGTTGTCGACCTCATCTTCAATTAAG 330646 Query 11102 CCAACAATCACATGTGATCTGAGACttt 11129 | ||||| || | |||| ||||| || Sbjct 330647 CTGACAATTACGTATGATGAGAGACATT 330674 >seq27202 Length=36428 Score = 82.4 bits (90), Expect = 5e-12 Identities = 95/125 (76%), Gaps = 11/125 (9%) Strand=Plus/Plus Query 6719 AGGGCAATAAAGTAAGAAATGTCTCAGATCACATGTAATTGTTTACTGAGGCGAAGCCGA 6778 |||||| ||||| ||||||||||||||| || |||||| ||| ||||||| || Sbjct 25880 AGGGCAGGAAAGTGAGAAATGTCTCAGATTACTTGTAAT-------TGAAGCGAAGCTGA 25932 Query 6779 GGTCAACAAACATGTGGTCTGAGGCTTTCTTA-TTTACTGTCCA--AGATTTGTATGCGA 6835 ||| |||||||||| ||||| ||||||||| ||||| | | || ||||| | | | Sbjct 25933 AGTC-TCAAACATGTGATCTGAAGCTTTCTTACTTTACGCACGAGGAGTTTTGTTTACTA 25991 Query 6836 TTTTT 6840 ||||| Sbjct 25992 TTTTT 25996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35655896331400