Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21]
60,049 sequences; 728,788,927 total letters
Query= NC_006661.1
Length=11186
Score E
Sequences producing significant alignments: (Bits) Value
seq41404 113 3e-21
seq28803 98.7 7e-17
seq53994 93.3 3e-15
seq19488 93.3 3e-15
seq24163 91.5 1e-14
seq7195 89.7 4e-14
seq44248 87.8 1e-13
seq49259 86.0 4e-13
seq6234 84.2 2e-12
seq4816 84.2 2e-12
seq27202 82.4 5e-12
>seq41404
Length=377970
Score = 113 bits (124), Expect = 3e-21
Identities = 102/127 (80%), Gaps = 1/127 (1%)
Strand=Plus/Minus
Query 6715 ACCTAGGGCAATAAAGTAAGAAATGTCTCAGATCACATGTAATTGTTTACTGAGGCGAAG 6774
|||||| || |||||||||||||| ||||| ||||||||||||||| | | ||||||
Sbjct 304965 ACCTAGCACAGGAAAGTAAGAAATGTATCAGAACACATGTAATTGTTTGCCAAAGCGAAG 304906
Query 6775 CCGAGGTCAACAAACATGTGGTCTGAGGCTTTCTTA-TTTACTGTCCAAGATTTGTATGC 6833
| |||||| |||| |||||| |||||||| ||||| ||||||| ||| | |||||
Sbjct 304905 CTGAGGTCGACAACCATGTGATCTGAGGCGCTCTTACTTTACTGATTAAGGTGCGTATGT 304846
Query 6834 GATTTTT 6840
||||||
Sbjct 304845 TATTTTT 304839
>seq28803
Length=167045
Score = 98.7 bits (108), Expect = 7e-17
Identities = 136/191 (71%), Gaps = 11/191 (6%)
Strand=Plus/Minus
Query 10981 CACTGCGGTAAACGAAATTGCCACATTCCGGCTACGTCGGGCAGAAAAATAGT------- 11033
||||| | ||| ||||| | | ||||| ||||||||| ||||||| ||||
Sbjct 152635 CACTGAGCTAAGCGAAAATTTCGTTTTCCGCCTACGTCGGACAGAAAAGTAGTTAGTAGG 152576
Query 11034 --ATACACACCTTGGCCAGTAAAAAGTAAACCCTCAGACCACATGTTTGTCAACCTCGAC 11091
|||| |||||| |||||||| ||| ||||| | |||| ||||||| ||
Sbjct 152575 TAATACGCACCTTAAACAGTAAAATAAAAAGCCTCAT--CTCATGATTGTCAATTTCAGA 152518
Query 11092 TTCACCTCGGCCAACAATCACATGTGATCTGAGACtttttttATTTTACTGGCCTAGGTA 11151
| ||| | | || |||| ||||||||||| ||||| |||| || ||| || |||||||
Sbjct 152517 TACACTTTGACCGACAACCACATGTGATCAGAGACATTTTATACTTTCTTGCCCTAGGTG 152458
Query 11152 TGTGATATACT 11162
|| |||||||
Sbjct 152457 CGTAATATACT 152447
>seq53994
Length=363633
Score = 93.3 bits (102), Expect = 3e-15
Identities = 110/144 (76%), Gaps = 5/144 (3%)
Strand=Plus/Minus
Query 11024 GAAAAATAGTATACACACCTTGGCCAGTAAAAAGTAAACCCTCAGACCACATGTTTGTCA 11083
|||||||||||||| || |||| | |||||| ||||| | ||| ||||||||||||
Sbjct 198319 GAAAAATAGTATACGCATCTTGTC-AGTAAA--GTAAAAAAGCTGAC-ACATGTTTGTCA 198264
Query 11084 ACCTCGACTTCACCTCGGCCAACAATCACATGTGATCTGAGACtttttttA-TTTTACTG 11142
|||| |||| | | |||| ||||| || |||||||||||| ||| ||| ||| | |
Sbjct 198263 ACCTTAGCTTCGCTTTGGCCGACAATTACGTGTGATCTGAGATATTTCTTACTTTCCCCG 198204
Query 11143 GCCTAGGTATGTGATATACTATTT 11166
||| ||| || || ||||||||
Sbjct 198203 TCCTCGGTGAGTAATGTACTATTT 198180
Score = 86.0 bits (94), Expect = 4e-13
Identities = 93/119 (78%), Gaps = 6/119 (5%)
Strand=Plus/Plus
Query 6727 AAAGTAAGAAATGTCTCAGATCACATGTAATTGTTTACTGAGGCGAAGCCGAGGTCAACA 6786
|||||||||||| |||||||||||| |||||||| | | ||||||| |||| |||
Sbjct 198209 AAAGTAAGAAATATCTCAGATCACACGTAATTGTCGGCCAAAGCGAAGCTAAGGTTGACA 198268
Query 6787 AACATGTGGTCTGAGGCTTTCTTA-TTTACTGTCCAAGATTTGTATGCGATTTTTCTTC 6844
||||||| ||| ||||| ||| ||||||| |||||| |||| | ||||||| ||
Sbjct 198269 AACATGT-GTC---AGCTTTTTTACTTTACTG-ACAAGATGCGTATACTATTTTTCATC 198322
>seq19488
Length=32993
Score = 93.3 bits (102), Expect = 3e-15
Identities = 79/95 (83%), Gaps = 3/95 (3%)
Strand=Plus/Minus
Query 6719 AGGGCAATAAAGTAAGAAATGTCTCAGATCACATGTAATTGTTTACTG-AGGCGAAGCCG 6777
|||||| ||| |||||||| |||| |||||||||| ||||| | |||||||||||
Sbjct 19205 AGGGCAGGAAAATAAGAAATATCTCGGATCACATGTGATTGTCGAGGCCAGGCGAAGCCG 19146
Query 6778 AGGTCAACAAACATGTGGTCTGAGG--CTTTCTTA 6810
||||| ||||||||||| ||||||| ||||||||
Sbjct 19145 AGGTCCACAAACATGTGATCTGAGGATCTTTCTTA 19111
Score = 82.4 bits (90), Expect = 5e-12
Identities = 70/85 (82%), Gaps = 1/85 (1%)
Strand=Plus/Plus
Query 11063 CCTCAGACCACATGTTTGTCAACCTCGACTTCACCTCGGC-CAACAATCACATGTGATCT 11121
||||||| ||||||||||| |||||| |||| ||| | | | ||||||||||||||||
Sbjct 19121 CCTCAGATCACATGTTTGTGGACCTCGGCTTCGCCTGGCCTCGACAATCACATGTGATCC 19180
Query 11122 GAGACtttttttATTTTACTGGCCT 11146
|||| ||| ||||||| ||| |||
Sbjct 19181 GAGATATTTCTTATTTTCCTGCCCT 19205
>seq24163
Length=142819
Score = 91.5 bits (100), Expect = 1e-14
Identities = 102/134 (76%), Gaps = 3/134 (2%)
Strand=Plus/Plus
Query 10992 ACGAAATTGCCACATTCCGGCTACGTCGGGCAGAAAAATAGTATACACACCTTGGCCAGT 11051
|||||| | ||| ||||| |||||||||||||||||||||||||| ||||| | |||
Sbjct 26720 ACGAAAATTTCACTTTCCGCCTACGTCGGGCAGAAAAATAGTATACGCACCTCGATGAGT 26779
Query 11052 AAAAAGTAAACCCTCAGACCACATGTTTGTCAACCTCGACTTCACCTCGGCCAACAATCA 11111
||||| || ||||| |||| | |||| |||| || | |||| ||||| || || |
Sbjct 26780 --AAAGT-AAGACTCAGTTCACACGGTTGTTAACCCCGGCGTCACTTCGGCTGACGATTA 26836
Query 11112 CATGTGATCTGAGA 11125
| ||| ||||||
Sbjct 26837 CGTGTATACTGAGA 26850
>seq7195
Length=102581
Score = 89.7 bits (98), Expect = 4e-14
Identities = 78/95 (82%), Gaps = 3/95 (3%)
Strand=Plus/Plus
Query 6719 AGGGCAATAAAGTAAGAAATGTCTCAGATCACATGTAATTGTTTACTG-AGGCGAAGCCG 6777
||| || ||| |||||||| |||| |||||||||| ||||| | |||||||||||
Sbjct 51042 AGGTCAGGAAAATAAGAAATATCTCGGATCACATGTGATTGTCGAGGCCAGGCGAAGCCG 51101
Query 6778 AGGTCAACAAACATGTGGTCTGAGG--CTTTCTTA 6810
||||| ||||||||||| ||||||| ||||||||
Sbjct 51102 AGGTCGACAAACATGTGATCTGAGGATCTTTCTTA 51136
Score = 87.8 bits (96), Expect = 1e-13
Identities = 71/85 (84%), Gaps = 1/85 (1%)
Strand=Plus/Minus
Query 11063 CCTCAGACCACATGTTTGTCAACCTCGACTTCACCTCGGC-CAACAATCACATGTGATCT 11121
||||||| |||||||||||| |||||| |||| ||| | | | ||||||||||||||||
Sbjct 51126 CCTCAGATCACATGTTTGTCGACCTCGGCTTCGCCTGGCCTCGACAATCACATGTGATCC 51067
Query 11122 GAGACtttttttATTTTACTGGCCT 11146
|||| ||| ||||||| ||| |||
Sbjct 51066 GAGATATTTCTTATTTTCCTGACCT 51042
>seq44248
Length=8111
Score = 87.8 bits (96), Expect = 1e-13
Identities = 101/134 (75%), Gaps = 3/134 (2%)
Strand=Plus/Minus
Query 10992 ACGAAATTGCCACATTCCGGCTACGTCGGGCAGAAAAATAGTATACACACCTTGGCCAGT 11051
|||||| | ||| ||||| ||||||||||||||||||||||| || ||||| | |||
Sbjct 2884 ACGAAAATTTCACTTTCCGCCTACGTCGGGCAGAAAAATAGTACACGCACCTCGATGAGT 2825
Query 11052 AAAAAGTAAACCCTCAGACCACATGTTTGTCAACCTCGACTTCACCTCGGCCAACAATCA 11111
||||| || ||||| |||| | |||| |||| || | |||| ||||| || || |
Sbjct 2824 --AAAGT-AAGACTCAGTTCACACGGTTGTAAACCCCGGCGTCACTTCGGCTGACGATTA 2768
Query 11112 CATGTGATCTGAGA 11125
| ||| ||||||
Sbjct 2767 CGTGTATACTGAGA 2754
>seq49259
Length=157551
Score = 86.0 bits (94), Expect = 4e-13
Identities = 75/92 (82%), Gaps = 1/92 (1%)
Strand=Plus/Minus
Query 6719 AGGGCAATAAAGTAAGAAATGTCTCAGATCACATGTAATTGTTTACTGAGGCGAAGCCGA 6778
|||||| |||||| |||||||||| ||||| ||| |||||| | || ||||||| ||
Sbjct 56972 AGGGCAGGAAAGTAGGAAATGTCTCTGATCATATGAAATTGTCCGCCGAAGCGAAGCTGA 56913
Query 6779 GGTCAACAAACATGTGGTCTGAGGCTTTCTTA 6810
| || |||| |||||| || ||||||||||||
Sbjct 56912 G-TCGACAATCATGTGATCCGAGGCTTTCTTA 56882
>seq6234
Length=964271
Score = 84.2 bits (92), Expect = 2e-12
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 6715 ACCTAGGGCAATAAAGTAAGAAATGTCTCAGATCACATGTAATTGTTTACTGAGGCGAAG 6774
||| |||| |||||||||||||||| ||||||||||||| |||||| || || ||||||
Sbjct 666527 ACCGAGGGAAATAAAGTAAGAAATGCCTCAGATCACATGCAATTGTGGACCGAAGCGAAG 666468
Query 6775 CCGAGGTCAACAAA 6788
| |||||| ||||
Sbjct 666467 CTGAGGTCTGCAAA 666454
>seq4816
Length=602866
Score = 84.2 bits (92), Expect = 2e-12
Identities = 108/148 (73%), Gaps = 1/148 (1%)
Strand=Plus/Plus
Query 10983 CTGCGGTAAACGAAATTGCCACATTCCGGCTACGTCGGGCAGAAAAATAGTATACACACC 11042
||||| ||||||||| | | ||||| ||||||| | |||||||||||||| || |
Sbjct 330527 CTGCGCTAAACGAAAATTTCGTTTTCCGCTTACGTCGCACGGAAAAATAGTATACGCAAC 330586
Query 11043 TTGGCCAGT-AAAAAGTAAACCCTCAGACCACATGTTTGTCAACCTCGACTTCACCTCGG 11101
| | |||| || | ||| ||||||| |||||| ||||| ||||| ||||| | |
Sbjct 330587 TCGATCAGTGAAGGAAAAAAGCCTCAGATCACATGGTTGTCGACCTCATCTTCAATTAAG 330646
Query 11102 CCAACAATCACATGTGATCTGAGACttt 11129
| ||||| || | |||| ||||| ||
Sbjct 330647 CTGACAATTACGTATGATGAGAGACATT 330674
>seq27202
Length=36428
Score = 82.4 bits (90), Expect = 5e-12
Identities = 95/125 (76%), Gaps = 11/125 (9%)
Strand=Plus/Plus
Query 6719 AGGGCAATAAAGTAAGAAATGTCTCAGATCACATGTAATTGTTTACTGAGGCGAAGCCGA 6778
|||||| ||||| ||||||||||||||| || |||||| ||| ||||||| ||
Sbjct 25880 AGGGCAGGAAAGTGAGAAATGTCTCAGATTACTTGTAAT-------TGAAGCGAAGCTGA 25932
Query 6779 GGTCAACAAACATGTGGTCTGAGGCTTTCTTA-TTTACTGTCCA--AGATTTGTATGCGA 6835
||| |||||||||| ||||| ||||||||| ||||| | | || ||||| | | |
Sbjct 25933 AGTC-TCAAACATGTGATCTGAAGCTTTCTTACTTTACGCACGAGGAGTTTTGTTTACTA 25991
Query 6836 TTTTT 6840
|||||
Sbjct 25992 TTTTT 25996
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 35655896331400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |