Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq33365 91.5 2e-13 seq33683 87.8 2e-12 >seq33365 Length=5281 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 21512 ATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATT 21571 |||||||||||| ||||| || || ||||||| || | ||| || ||||| |||||| Sbjct 3553 ATTAATTCATTACTGAATGTCAATCCAGGCATTAGGCCGCGCTTCTTCAACCAGAATATT 3612 Query 21572 GACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAAC 21621 || ||||| || |||||||| || |||||||| || |||||||| || Sbjct 3613 GATGCAAAACTGCCAGAAAAGAATATTCCCTCAACAGCTGCAAATGCCAC 3662 >seq33683 Length=341392 Score = 87.8 bits (96), Expect = 2e-12 Identities = 180/265 (68%), Gaps = 2/265 (1%) Strand=Plus/Minus Query 131864 ATGACTCCTGTTAAACCTATGTTGGCTGATGTATGCGAATCTCTAGAAAAAGCAATAGAT 131923 ||||||||||| || ||| |||||| | || ||||| |||||| ||||| | Sbjct 86093 ATGACTCCTGTCTTGCCAATGCTGGCTGCAGCTTGTAAATCTGTAGAAATGGCAATGAAA 86034 Query 131924 AAATATAAAGATGGAATGTATTCAGAGGTAAAATATGATGGGGAGCGTGTACAAATTCAT 131983 || | | ||||||||| |||||| | ||||||||||| || | || ||| | ||| Sbjct 86033 AAGTGTCCGAATGGAATGTTTTCAGAAATTAAATATGATGGTGAAAGAGTGCAAGTACAT 85974 Query 131984 AAAAAAGATAATGTATACAATTATTTTAGTAGAAATTTAAAACCTGTTCTTACTCATAAA 132043 || |||| ||| | | ||| |||||| ||| ||||||||||| | | || || Sbjct 85973 AAGAAAGGTAAGGAGTTCAAATATTTTTCCAGAGCATTAAAACCTGTGATGGCACA-CAA 85915 Query 132044 ATTGATGGATTTGATAAACTGT-TGACTGATGCATTTCCCACAGCAAAAAACTTCATTTT 132102 | ||| |||| | | | | | | || | |||||||||| || | | | || || Sbjct 85914 AGTGAGTCATTTCAAAGATTATCTTCCTCAAGCATTTCCCAAAGGTGACGATCTAATATT 85855 Query 132103 AGATGCGGAATTAATAATGATAGAT 132127 |||||| ||| | ||||| | ||| Sbjct 85854 AGATGCTGAAGTGTTAATGGTGGAT 85830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531501548610760