Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq18227 493 2e-134 seq33365 118 1e-21 >seq18227 Length=276284 Score = 493 bits (546), Expect = 2e-134 Identities = 1204/1809 (67%), Gaps = 44/1809 (2%) Strand=Plus/Minus Query 61973 TTTTATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAG 62032 ||| ||||| ||||| | |||||| ||||| | || || ||||| || | || Sbjct 241839 TTTAATTTTGGATTTGTCAACTGTGAACTGAATAGCGTTGGCGGCAGGTTTGGTTCTTAA 241780 Query 62033 ATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 62092 |||||||||||| || || || || | |||| | || ||||| || |||||||| Sbjct 241779 ATAGTACATTCCAGTCTTGAGCCCAATTTTCCAGGCATAGAAATGAATTGAAGTTAGTTT 241720 Query 62093 GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCC 62152 ||| | || ||||||| ||||||||| | ||||||||| || || || || ||||| Sbjct 241719 CCCGTAATTAGGTTCTGCTACATGGATATTGAAAGATTGACTCTGGTCAATAAATGCTCC 241660 Query 62153 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AA 62211 || || |||||||||| || | ||||| | ||| ||||| | |||||| || || Sbjct 241659 TCTATCCGCAGCCATTTGAATAGTGGTCTTAACGGAAATCTCCCACACAGTTTTGTACAA 241600 Query 62212 CTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAA 62268 || || ||| |||| || | ||| |||| || || || ||| | |||| Sbjct 241599 ATCTCT-AATTTCTTGGGGTATATTTTCAATATTTTGGATAGAACCATTGTTATGAATAA 241541 Query 62269 TCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCG 62328 | |||||| || || || | ||| || | | || ||| | || || | ||| Sbjct 241540 TGACATTCTTCATGTCTTCGTCCCACAAGTCAGCTTGAGTCAAATCCCTGAGTAAATGAT 241481 Query 62329 GATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACG 62388 |||| || |||||||||||||||||||| ||||| | |||||| || ||| | | Sbjct 241480 GATTCACCACTTGAAATTCTCCAGACAACACTCTTCTTTGGTAAATGTTTGATGTAAATG 241421 Query 62389 GTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62448 |||| | || ||||| ||||| | ||| || || || || ||||| ||||| || || | Sbjct 241420 GTTCAAATGATTCATTGTTTCCGAGAATCTGTGCTGTAGAAGCAGTTGGCATTGGAGCTA 241361 Query 62449 CCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATT 62506 ||| | ||| | ||| || ||| | || ||||||||||| || | ||| || Sbjct 241360 GCAAAAGTGAATTGCGAAGGCC--ATGCTTTGCAATTTTATCTTTGAGCTCTGTCCAGTT 241303 Query 62507 CCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GT 62565 ||||||||| | ||| ||| || ||||| | |||||| | Sbjct 241302 CCAAAGATCTGTAGGTGTTTTGTTCCACATGTCGTATTGAAGTATACCTTGACTGGCTGG 241243 Query 62566 ACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTA 62625 || |||| | || ||| |||| ||||| || || |||||||||||||| || || | Sbjct 241242 ACT-TCCTTCGTAAGTACTGTATACACCTTCTTTTTCTGCTAGTTCACAACTTGCTTCCA 241184 Query 62626 ATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGT-GCTTCCAGGCTA 62684 || || || |||||||||||||| |||| | ||| | || | | |||| | || Sbjct 241183 GAGCTCCATAGTAAATGGTTTCGAATATCTGTTGATTCA-ATAATATCGCTTTCTCACTT 241125 Query 62685 TCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATA 62744 ||| | || | | || | ||| | ||| || | ||| |||||||||||||| ||| Sbjct 241124 TCATAGGGCAGTCTCATTAGGACAAATGTGTCGGCCAGTCCCTGAACACCAATACCAATA 241065 Query 62745 GGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATA 62804 || || |||||| |||| || | | ||||||||| | ||||| | || | ||| ||| Sbjct 241064 GGCCTGTGTCTCATATTCGAATTCTTAGCTTCTGGTACTGGATAGAAGTTCACATCAATA 241005 Query 62805 ATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTT-GAGAAAATCAAA 62863 ||||| || | |||| || ||||| | || || | ||| | |||| | || Sbjct 241004 ATTTTGTTTAAATTTTGTGTGATGACTTTTGATATTTCTTTTAATTTTGTGAAATTATAA 240945 Query 62864 --TCGCCCATCTATTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACC 62921 | | || |||||||||| ||||| || | || || | |||||| || || || Sbjct 240944 GTTTTGTCTTCGTTTACAAACATATTCAAAGCTATTGAAGCTAAATTACATACAGCCACT 240885 Query 62922 TCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCT 62981 |||| || | |||| | || ||||| || ||||| || || || || |||||| Sbjct 240884 TCATCTTCAGAAGTGTATTCAACAATTTCAGTACAGAGATTGCTGCATTTAATCGTTCCT 240825 Query 62982 AAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCA 63041 ||||||| |||||| || || |||| || | || || || | ||| |||| || ||| Sbjct 240824 AAATTTTTTTGATTGCTTTTCCTGTTGCAGGAGTCTTTGTATAACATGTATGGTGTTCCA 240765 Query 63042 GTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGC-----CTT-TATTATA 63095 || || | || | ||||||||| |||||||| | ||| |||| ||| | | | | Sbjct 240764 GTCTCTACTTGGGCTTCTATAATAGCTTTCCATAATACTTGAGCACGAACTTGTCTAACA 240705 Query 63096 GATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAA 63155 | || | |||||||| || ||| | ||| || || ||||| |||||||| Sbjct 240704 TAATTAT-TCTCCTTT-----TCATATTTTTCATATAAGGCCTCAAACTCTTCTCCCCAG 240651 Query 63156 ACATTGTCC---AATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCC 63212 |||| | ||| || || | || || |||||||| ||| | ||| | | | Sbjct 240650 G---TGTCAGTTAGTCCGGGGCAATTATGAGGGCACATCAAGCTCCAGTTTCCATTA-CT 240595 Query 63213 TTCA-CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271 |||| ||| |||||| || | |||||| ||||| | || ||| | || || | | Sbjct 240594 TTCAACTCTTTTCATGAATAAATCAGGTATCCACAAGGCATAAAACAATTCCCTAGCACG 240535 Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331 | |||||| || || ||||||||||| ||||| || ||| | | ||||| | |||||| Sbjct 240534 AACTTCCTCTTTGCCAGTATTCTTTTTCAGATCCAGAAACTCAAATATATCCGCATGCCA 240475 Query 63332 CGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCT 63391 |||||| ||||||| || | | || |||| || |||||||| ||||| | ||||| Sbjct 240474 CGGTTCTAAGTATACTGCAAATGCACCTGGCCTCTTATTTCCTCCTTGATCGACATATCT 240415 Query 63392 AGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACC 63451 ||| ||||||||||| ||||| | ||| || | | ||| || || | |||||| || || Sbjct 240414 AGCTGTGTTATTATACACTCTGAGCATGGGTACTAGACCATTCGAAACACCATTTGTTCC 240355 Query 63452 GGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA----TAGACCTATTCCCCCTG 63507 | ||| | || | || | ||| ||| || | || || || || | Sbjct 240354 AGCAATAGTTGTGCCTTTTGCTCTAAT----GCAATGGACATGCAATCCAATCCCACCAG 240299 Query 63508 CCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCAT 63567 | ||| || || || || ||| | || | || ||||| || ||||||||||| |||| Sbjct 240298 CAGATTTTGATATCAAGGCACATTGCTTAAGAGTATCATATATTCCCTCTATGCTGTCAT 240239 Query 63568 CGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATA 63627 | ||||| | || ||| || || | ||| | ||| | || || | Sbjct 240238 CTTTCATGGCTATTAAAAAGCATGATGATAATTGAGGTTTGGGAGTGGCAGCTGAGAAGA 240179 Query 63628 AGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTG 63687 || || || || ||||| |||||||||| |||| ||| || || | ||||||| Sbjct 240178 GAGTTGGGCTGGCATGAGTAAAATATTTTTCAGACAGTAAATTATAAGTGTTGATAGCTG 240119 Query 63688 AGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTT 63747 || |||||| ||| ||||| | || |||||||| | ||||||||| || || | Sbjct 240118 CATCGATATCCTCCCCATGTATTCCAATTGAAACACGCATAAGCATGTGCTGTGGCCTCT 240059 Query 63748 CAACGATCT 63756 | | |||| Sbjct 240058 CTGCTATCT 240050 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 63960 AATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCA 64019 ||| |||| ||||||||||| |||| |||||| | || | ||| || || || | ||| Sbjct 230060 AATTGTTTCTTTGTTTCCTTCTGTAAATTTGAAATAGCCAATCTTGCAGCGAGTACTGCA 230001 Query 64020 TAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCT 64079 ||||| ||||| | | || || || ||| |||| ||||| | | |||| | || Sbjct 230000 TAATCTGGATGATCAATGGTCTTGGTTGCAGCTGTTTCCGCTGCTAAATTGTCAAGCTCC 229941 Query 64080 ACCGTTGTTACTCCATTATATATTCCTTGAATAACCTT 64117 || |||||||||||| ||| ||||| ||||||||| Sbjct 229940 ACTGTTGTTACTCCAGAATAAATTCCACTAATAACCTT 229903 >seq33365 Length=5281 Score = 118 bits (130), Expect = 1e-21 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623 |||| | | ||| || || ||||| | | |||||| || || |||| || || ||||| Sbjct 4383 ATCTCTGATATATGTGTCTATCAACAAAGAATACATCTCAGAGTGAACATTCTCCATGGC 4442 Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683 || |||||||| ||||||||||| || || || | || |||||| | || | || Sbjct 4443 AATTTGAAATCCATAGAAACATCTGGCTTCAGTGACTTGCACTTCTTGGGAGAACCTCTC 4502 Query 33684 CGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 33743 | | | ||||||||| ||||| || ||| ||| ||||| || ||||| ||||| ||||| Sbjct 4503 CACAAGATTTTCATTGACTATCCCATCAGAGGCAGCAAAGAAGGCCAAGACATGCTTTAT 4562 Query 33744 AAAATATTTTTCG 33756 ||||| ||||| Sbjct 4563 AAAATGCCTTTCG 4575 Score = 113 bits (124), Expect = 6e-20 Identities = 162/228 (71%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| |||| ||||| ||| || || || | ||| ||||||||||| ||||| | Sbjct 3539 CCTCATCTCGTGAAATTAATTCATTACTGAATGTCAATCCAGGCATTAGGCCGCGCTTCT 3598 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | | ||| ||||| || || || ||||||||||| ||||| || || || ||||| | Sbjct 3599 TCAACCAGAATATTGATGCAAAACTGCCAGAAAAGAATATTCCCTCAACAGCTGCAAATG 3658 Query 33446 CAATAAGTCTCTCTCCATAACCGGCGC---TGTCATGTATCCACTTTTGAGCCCAATCGG 33502 | | || | ||||||| || || | || | ||||||| |||||||||| | Sbjct 3659 CCACAATACGCTCTCCAAAAGTTGCACTCTTGCTAGCAATCCACTGCAGAGCCCAATCTG 3718 Query 33503 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 33550 ||||| | ||||| || |||| ||||| || |||||||| | | ||| Sbjct 3719 CCTTCCTCTTTACGCATGGCAGAGTTTCAATAGCATTAAACAAAAAGT 3766 Score = 82.4 bits (90), Expect = 1e-10 Identities = 80/102 (78%), Gaps = 1/102 (1%) Strand=Plus/Plus Query 33785 TATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 33844 || |||| |||| |||||||||||| |||||||| || || || || |||||||| |||| Sbjct 4927 TACCTTT-GATAGATCTACTTCTTCGACTGTCCAGAAAGAAGCTTCAGCCTTTTTGTACA 4985 Query 33845 TGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATC 33886 | | ||| || || ||||| || |||||||| || |||| Sbjct 4986 TTTCCCAAATATCGGGATATTTAATGGGGAAAATGACGAATC 5027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622479608044840