Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21]
60,049 sequences; 728,788,927 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq18227 493 2e-134
seq33365 118 1e-21
>seq18227
Length=276284
Score = 493 bits (546), Expect = 2e-134
Identities = 1204/1809 (67%), Gaps = 44/1809 (2%)
Strand=Plus/Minus
Query 61973 TTTTATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAG 62032
||| ||||| ||||| | |||||| ||||| | || || ||||| || | ||
Sbjct 241839 TTTAATTTTGGATTTGTCAACTGTGAACTGAATAGCGTTGGCGGCAGGTTTGGTTCTTAA 241780
Query 62033 ATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 62092
|||||||||||| || || || || | |||| | || ||||| || ||||||||
Sbjct 241779 ATAGTACATTCCAGTCTTGAGCCCAATTTTCCAGGCATAGAAATGAATTGAAGTTAGTTT 241720
Query 62093 GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCC 62152
||| | || ||||||| ||||||||| | ||||||||| || || || || |||||
Sbjct 241719 CCCGTAATTAGGTTCTGCTACATGGATATTGAAAGATTGACTCTGGTCAATAAATGCTCC 241660
Query 62153 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AA 62211
|| || |||||||||| || | ||||| | ||| ||||| | |||||| || ||
Sbjct 241659 TCTATCCGCAGCCATTTGAATAGTGGTCTTAACGGAAATCTCCCACACAGTTTTGTACAA 241600
Query 62212 CTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAA 62268
|| || ||| |||| || | ||| |||| || || || ||| | ||||
Sbjct 241599 ATCTCT-AATTTCTTGGGGTATATTTTCAATATTTTGGATAGAACCATTGTTATGAATAA 241541
Query 62269 TCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCG 62328
| |||||| || || || | ||| || | | || ||| | || || | |||
Sbjct 241540 TGACATTCTTCATGTCTTCGTCCCACAAGTCAGCTTGAGTCAAATCCCTGAGTAAATGAT 241481
Query 62329 GATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACG 62388
|||| || |||||||||||||||||||| ||||| | |||||| || ||| | |
Sbjct 241480 GATTCACCACTTGAAATTCTCCAGACAACACTCTTCTTTGGTAAATGTTTGATGTAAATG 241421
Query 62389 GTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62448
|||| | || ||||| ||||| | ||| || || || || ||||| ||||| || || |
Sbjct 241420 GTTCAAATGATTCATTGTTTCCGAGAATCTGTGCTGTAGAAGCAGTTGGCATTGGAGCTA 241361
Query 62449 CCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATT 62506
||| | ||| | ||| || ||| | || ||||||||||| || | ||| ||
Sbjct 241360 GCAAAAGTGAATTGCGAAGGCC--ATGCTTTGCAATTTTATCTTTGAGCTCTGTCCAGTT 241303
Query 62507 CCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GT 62565
||||||||| | ||| ||| || ||||| | |||||| |
Sbjct 241302 CCAAAGATCTGTAGGTGTTTTGTTCCACATGTCGTATTGAAGTATACCTTGACTGGCTGG 241243
Query 62566 ACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTA 62625
|| |||| | || ||| |||| ||||| || || |||||||||||||| || || |
Sbjct 241242 ACT-TCCTTCGTAAGTACTGTATACACCTTCTTTTTCTGCTAGTTCACAACTTGCTTCCA 241184
Query 62626 ATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGT-GCTTCCAGGCTA 62684
|| || || |||||||||||||| |||| | ||| | || | | |||| | ||
Sbjct 241183 GAGCTCCATAGTAAATGGTTTCGAATATCTGTTGATTCA-ATAATATCGCTTTCTCACTT 241125
Query 62685 TCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATA 62744
||| | || | | || | ||| | ||| || | ||| |||||||||||||| |||
Sbjct 241124 TCATAGGGCAGTCTCATTAGGACAAATGTGTCGGCCAGTCCCTGAACACCAATACCAATA 241065
Query 62745 GGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATA 62804
|| || |||||| |||| || | | ||||||||| | ||||| | || | ||| |||
Sbjct 241064 GGCCTGTGTCTCATATTCGAATTCTTAGCTTCTGGTACTGGATAGAAGTTCACATCAATA 241005
Query 62805 ATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTT-GAGAAAATCAAA 62863
||||| || | |||| || ||||| | || || | ||| | |||| | ||
Sbjct 241004 ATTTTGTTTAAATTTTGTGTGATGACTTTTGATATTTCTTTTAATTTTGTGAAATTATAA 240945
Query 62864 --TCGCCCATCTATTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACC 62921
| | || |||||||||| ||||| || | || || | |||||| || || ||
Sbjct 240944 GTTTTGTCTTCGTTTACAAACATATTCAAAGCTATTGAAGCTAAATTACATACAGCCACT 240885
Query 62922 TCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCT 62981
|||| || | |||| | || ||||| || ||||| || || || || ||||||
Sbjct 240884 TCATCTTCAGAAGTGTATTCAACAATTTCAGTACAGAGATTGCTGCATTTAATCGTTCCT 240825
Query 62982 AAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCA 63041
||||||| |||||| || || |||| || | || || || | ||| |||| || |||
Sbjct 240824 AAATTTTTTTGATTGCTTTTCCTGTTGCAGGAGTCTTTGTATAACATGTATGGTGTTCCA 240765
Query 63042 GTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGC-----CTT-TATTATA 63095
|| || | || | ||||||||| |||||||| | ||| |||| ||| | | | |
Sbjct 240764 GTCTCTACTTGGGCTTCTATAATAGCTTTCCATAATACTTGAGCACGAACTTGTCTAACA 240705
Query 63096 GATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAA 63155
| || | |||||||| || ||| | ||| || || ||||| ||||||||
Sbjct 240704 TAATTAT-TCTCCTTT-----TCATATTTTTCATATAAGGCCTCAAACTCTTCTCCCCAG 240651
Query 63156 ACATTGTCC---AATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCC 63212
|||| | ||| || || | || || |||||||| ||| | ||| | | |
Sbjct 240650 G---TGTCAGTTAGTCCGGGGCAATTATGAGGGCACATCAAGCTCCAGTTTCCATTA-CT 240595
Query 63213 TTCA-CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271
|||| ||| |||||| || | |||||| ||||| | || ||| | || || | |
Sbjct 240594 TTCAACTCTTTTCATGAATAAATCAGGTATCCACAAGGCATAAAACAATTCCCTAGCACG 240535
Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331
| |||||| || || ||||||||||| ||||| || ||| | | ||||| | ||||||
Sbjct 240534 AACTTCCTCTTTGCCAGTATTCTTTTTCAGATCCAGAAACTCAAATATATCCGCATGCCA 240475
Query 63332 CGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCT 63391
|||||| ||||||| || | | || |||| || |||||||| ||||| | |||||
Sbjct 240474 CGGTTCTAAGTATACTGCAAATGCACCTGGCCTCTTATTTCCTCCTTGATCGACATATCT 240415
Query 63392 AGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACC 63451
||| ||||||||||| ||||| | ||| || | | ||| || || | |||||| || ||
Sbjct 240414 AGCTGTGTTATTATACACTCTGAGCATGGGTACTAGACCATTCGAAACACCATTTGTTCC 240355
Query 63452 GGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA----TAGACCTATTCCCCCTG 63507
| ||| | || | || | ||| ||| || | || || || || |
Sbjct 240354 AGCAATAGTTGTGCCTTTTGCTCTAAT----GCAATGGACATGCAATCCAATCCCACCAG 240299
Query 63508 CCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCAT 63567
| ||| || || || || ||| | || | || ||||| || ||||||||||| ||||
Sbjct 240298 CAGATTTTGATATCAAGGCACATTGCTTAAGAGTATCATATATTCCCTCTATGCTGTCAT 240239
Query 63568 CGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATA 63627
| ||||| | || ||| || || | ||| | ||| | || || |
Sbjct 240238 CTTTCATGGCTATTAAAAAGCATGATGATAATTGAGGTTTGGGAGTGGCAGCTGAGAAGA 240179
Query 63628 AGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTG 63687
|| || || || ||||| |||||||||| |||| ||| || || | |||||||
Sbjct 240178 GAGTTGGGCTGGCATGAGTAAAATATTTTTCAGACAGTAAATTATAAGTGTTGATAGCTG 240119
Query 63688 AGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTT 63747
|| |||||| ||| ||||| | || |||||||| | ||||||||| || || |
Sbjct 240118 CATCGATATCCTCCCCATGTATTCCAATTGAAACACGCATAAGCATGTGCTGTGGCCTCT 240059
Query 63748 CAACGATCT 63756
| | ||||
Sbjct 240058 CTGCTATCT 240050
Score = 91.5 bits (100), Expect = 2e-13
Identities = 115/158 (73%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 63960 AATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCA 64019
||| |||| ||||||||||| |||| |||||| | || | ||| || || || | |||
Sbjct 230060 AATTGTTTCTTTGTTTCCTTCTGTAAATTTGAAATAGCCAATCTTGCAGCGAGTACTGCA 230001
Query 64020 TAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCT 64079
||||| ||||| | | || || || ||| |||| ||||| | | |||| | ||
Sbjct 230000 TAATCTGGATGATCAATGGTCTTGGTTGCAGCTGTTTCCGCTGCTAAATTGTCAAGCTCC 229941
Query 64080 ACCGTTGTTACTCCATTATATATTCCTTGAATAACCTT 64117
|| |||||||||||| ||| ||||| |||||||||
Sbjct 229940 ACTGTTGTTACTCCAGAATAAATTCCACTAATAACCTT 229903
>seq33365
Length=5281
Score = 118 bits (130), Expect = 1e-21
Identities = 142/193 (74%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623
|||| | | ||| || || ||||| | | |||||| || || |||| || || |||||
Sbjct 4383 ATCTCTGATATATGTGTCTATCAACAAAGAATACATCTCAGAGTGAACATTCTCCATGGC 4442
Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683
|| |||||||| ||||||||||| || || || | || |||||| | || | ||
Sbjct 4443 AATTTGAAATCCATAGAAACATCTGGCTTCAGTGACTTGCACTTCTTGGGAGAACCTCTC 4502
Query 33684 CGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 33743
| | | ||||||||| ||||| || ||| ||| ||||| || ||||| ||||| |||||
Sbjct 4503 CACAAGATTTTCATTGACTATCCCATCAGAGGCAGCAAAGAAGGCCAAGACATGCTTTAT 4562
Query 33744 AAAATATTTTTCG 33756
||||| |||||
Sbjct 4563 AAAATGCCTTTCG 4575
Score = 113 bits (124), Expect = 6e-20
Identities = 162/228 (71%), Gaps = 3/228 (1%)
Strand=Plus/Plus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||| |||| ||||| ||| || || || | ||| ||||||||||| ||||| |
Sbjct 3539 CCTCATCTCGTGAAATTAATTCATTACTGAATGTCAATCCAGGCATTAGGCCGCGCTTCT 3598
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| | ||| ||||| || || || ||||||||||| ||||| || || || ||||| |
Sbjct 3599 TCAACCAGAATATTGATGCAAAACTGCCAGAAAAGAATATTCCCTCAACAGCTGCAAATG 3658
Query 33446 CAATAAGTCTCTCTCCATAACCGGCGC---TGTCATGTATCCACTTTTGAGCCCAATCGG 33502
| | || | ||||||| || || | || | ||||||| |||||||||| |
Sbjct 3659 CCACAATACGCTCTCCAAAAGTTGCACTCTTGCTAGCAATCCACTGCAGAGCCCAATCTG 3718
Query 33503 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 33550
||||| | ||||| || |||| ||||| || |||||||| | | |||
Sbjct 3719 CCTTCCTCTTTACGCATGGCAGAGTTTCAATAGCATTAAACAAAAAGT 3766
Score = 82.4 bits (90), Expect = 1e-10
Identities = 80/102 (78%), Gaps = 1/102 (1%)
Strand=Plus/Plus
Query 33785 TATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 33844
|| |||| |||| |||||||||||| |||||||| || || || || |||||||| ||||
Sbjct 4927 TACCTTT-GATAGATCTACTTCTTCGACTGTCCAGAAAGAAGCTTCAGCCTTTTTGTACA 4985
Query 33845 TGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATC 33886
| | ||| || || ||||| || |||||||| || ||||
Sbjct 4986 TTTCCCAAATATCGGGATATTTAATGGGGAAAATGACGAATC 5027
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622479608044840
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