Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq18227 504 9e-138 seq33365 122 1e-22 >seq18227 Length=276284 Score = 504 bits (558), Expect = 9e-138 Identities = 1204/1808 (67%), Gaps = 42/1808 (2%) Strand=Plus/Minus Query 61828 TTTTATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAG 61887 ||| ||||| ||||| | |||||| ||||| | || || ||||| || | || Sbjct 241839 TTTAATTTTGGATTTGTCAACTGTGAACTGAATAGCGTTGGCGGCAGGTTTGGTTCTTAA 241780 Query 61888 ATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 61947 |||||||||||| || || || || | |||| | || ||||| || |||||||| Sbjct 241779 ATAGTACATTCCAGTCTTGAGCCCAATTTTCCAGGCATAGAAATGAATTGAAGTTAGTTT 241720 Query 61948 GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCC 62007 ||| | || ||||||| ||||||||| | ||||||||| || || || || ||||| Sbjct 241719 CCCGTAATTAGGTTCTGCTACATGGATATTGAAAGATTGACTCTGGTCAATAAATGCTCC 241660 Query 62008 CCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AA 62066 || || |||||||||| ||| | ||||| | ||| ||||| | |||||| || || Sbjct 241659 TCTATCCGCAGCCATTTGAATAGTGGTCTTAACGGAAATCTCCCACACAGTTTTGTACAA 241600 Query 62067 CTCGCTTAATATCTTCTGGAAGGTTT---GTATTCTGAATGGATCCACCATCTGCCATAA 62123 || | |||| |||| || | ||| |||| || || || ||| | |||| Sbjct 241599 ATCTC-TAATTTCTTGGGGTATATTTTCAATATTTTGGATAGAACCATTGTTATGAATAA 241541 Query 62124 TCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCG 62183 | |||||| || || || | ||| || | | || ||| | || || | ||| Sbjct 241540 TGACATTCTTCATGTCTTCGTCCCACAAGTCAGCTTGAGTCAAATCCCTGAGTAAATGAT 241481 Query 62184 GATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACG 62243 |||| || |||||||||||||||||||| ||||| | |||||| || ||| | | Sbjct 241480 GATTCACCACTTGAAATTCTCCAGACAACACTCTTCTTTGGTAAATGTTTGATGTAAATG 241421 Query 62244 GTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62303 |||| | || ||||| ||||| | ||| || || || || ||||| ||||| || || | Sbjct 241420 GTTCAAATGATTCATTGTTTCCGAGAATCTGTGCTGTAGAAGCAGTTGGCATTGGAGCTA 241361 Query 62304 CCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATT 62361 ||| | ||| | ||| || ||| | || ||||||||||| || | ||| || Sbjct 241360 GCAAAAGTGAATTGCGAAGGCC--ATGCTTTGCAATTTTATCTTTGAGCTCTGTCCAGTT 241303 Query 62362 CCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GT 62420 ||||||||| | ||| ||| || ||||| | |||||| | Sbjct 241302 CCAAAGATCTGTAGGTGTTTTGTTCCACATGTCGTATTGAAGTATACCTTGACTGGCTGG 241243 Query 62421 ACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTA 62480 || |||| | || ||| |||| ||||| || || |||||||||||||| || || | Sbjct 241242 AC-TTCCTTCGTAAGTACTGTATACACCTTCTTTTTCTGCTAGTTCACAACTTGCTTCCA 241184 Query 62481 ATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTAT 62540 || || || |||||||||||||| |||| | ||| | | ||||| | || | Sbjct 241183 GAGCTCCATAGTAAATGGTTTCGAATATCTGTTGATTCAATAATATCGCTTTCTCACTTT 241124 Query 62541 CAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAG 62600 || | || | | || | ||| | ||| || | ||| |||||||||||||| |||| Sbjct 241123 CATAGGGCAGTCTCATTAGGACAAATGTGTCGGCCAGTCCCTGAACACCAATACCAATAG 241064 Query 62601 GTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAA 62660 | || |||||| |||| || | | ||||||||| | ||||| | || | ||| |||| Sbjct 241063 GCCTGTGTCTCATATTCGAATTCTTAGCTTCTGGTACTGGATAGAAGTTCACATCAATAA 241004 Query 62661 TTTTATTGAGATTTCTGACAATTACTTTGACCACATC-CTTCAGTTTGAGAAA--ATCAA 62717 |||| || | |||| || ||||| | || || | |||| |||| || | Sbjct 241003 TTTTGTTTAAATTTTGTGTGATGACTTTTGATATTTCTTTTAATTTTGTGAAATTATAAG 240944 Query 62718 ATCGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCT 62777 | | || |||||||||| ||||| || | || || | |||||| || || || | Sbjct 240943 TTTTGTCTTCGTTTACAAACATATTCAAAGCTATTGAAGCTAAATTACATACAGCCACTT 240884 Query 62778 CATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTA 62837 ||| || | |||| | || ||||| || ||||| || || || || ||||||| Sbjct 240883 CATCTTCAGAAGTGTATTCAACAATTTCAGTACAGAGATTGCTGCATTTAATCGTTCCTA 240824 Query 62838 AATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAG 62897 |||||| |||||| || || |||| || | || || || | ||| |||| || |||| Sbjct 240823 AATTTTTTTGATTGCTTTTCCTGTTGCAGGAGTCTTTGTATAACATGTATGGTGTTCCAG 240764 Query 62898 TTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGC-----CTT-TATTATAG 62951 | || | || | ||||||||| |||||||| | ||| |||| ||| | | | | Sbjct 240763 TCTCTACTTGGGCTTCTATAATAGCTTTCCATAATACTTGAGCACGAACTTGTCTAACAT 240704 Query 62952 ATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAA 63011 | || | |||| | |||| ||| | ||| || || ||||| |||||||| Sbjct 240703 AATTAT-TCTCCT-----TTTCATATTTTTCATATAAGGCCTCAAACTCTTCTCCCCA-- 240652 Query 63012 CATTGTC---CAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCT 63068 |||| ||||| || || | || || |||||||| ||| | ||| | | | | Sbjct 240651 -GGTGTCAGTTAGTCCGGGGCAATTATGAGGGCACATCAAGCTCCAGTTTCCATTA-CTT 240594 Query 63069 TC-ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTA 63127 || |||| |||||| || | |||||| ||||| | || ||| | || || | | | Sbjct 240593 TCAACTCTTTTCATGAATAAATCAGGTATCCACAAGGCATAAAACAATTCCCTAGCACGA 240534 Query 63128 TGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCAC 63187 |||||| || || ||||||||||| ||||| || ||| | | ||||| | ||||||| Sbjct 240533 ACTTCCTCTTTGCCAGTATTCTTTTTCAGATCCAGAAACTCAAATATATCCGCATGCCAC 240474 Query 63188 GGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTA 63247 ||||| ||||||| || | | || |||| || |||||||| ||||| | |||||| Sbjct 240473 GGTTCTAAGTATACTGCAAATGCACCTGGCCTCTTATTTCCTCCTTGATCGACATATCTA 240414 Query 63248 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCT 63307 || ||||||||||| ||||| | ||| || | | |||||| || |||||| || || Sbjct 240413 GCTGTGTTATTATACACTCTGAGCATGGGTACTAGACCATTCGAAACACCATTTGTTCCA 240354 Query 63308 GAGATATAGCTTCCACTGGCACGAATATTACTAATTGA----TAGACCTATTCCCCCTGC 63363 | ||| | || | || | ||| ||| || | || || || || || Sbjct 240353 GCAATAGTTGTGCCTTTTGCTCTAAT----GCAATGGACATGCAATCCAATCCCACCAGC 240298 Query 63364 CATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATC 63423 ||| || || || || ||| | || | |||||||| || |||||||| || ||||| Sbjct 240297 AGATTTTGATATCAAGGCACATTGCTTAAGAGTATCATATATTCCCTCTATGCTGTCATC 240238 Query 63424 CATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAA 63483 ||||| | || ||| || || | ||| | ||| | || || | Sbjct 240237 TTTCATGGCTATTAAAAAGCATGATGATAATTGAGGTTTGGGAGTGGCAGCTGAGAAGAG 240178 Query 63484 GGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGA 63543 || || || |||||||| |||||||||| |||| ||| || || | ||||||| Sbjct 240177 AGTTGGGCTGGCATGAGTAAAATATTTTTCAGACAGTAAATTATAAGTGTTGATAGCTGC 240118 Query 63544 GTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63603 || |||||| ||| ||||| | || |||||||| | ||||||||| || || || Sbjct 240117 ATCGATATCCTCCCCATGTATTCCAATTGAAACACGCATAAGCATGTGCTGTGGCCTCTC 240058 Query 63604 AACGATCT 63611 | |||| Sbjct 240057 TGCTATCT 240050 >seq33365 Length=5281 Score = 122 bits (134), Expect = 1e-22 Identities = 164/228 (72%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| |||| ||||||||| || || || | ||| ||||||||||| ||||| | Sbjct 3539 CCTCATCTCGTGAAATTAATTCATTACTGAATGTCAATCCAGGCATTAGGCCGCGCTTCT 3598 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | | ||| ||||| || ||||| ||||||||||| ||||| || || || ||||| | Sbjct 3599 TCAACCAGAATATTGATGCAAAACTGCCAGAAAAGAATATTCCCTCAACAGCTGCAAATG 3658 Query 32803 CAATAAGTCTCTCTCCATAACCGGCGC---TGTCATGTATCCACTTTTGAGCCCAATCGG 32859 | | || | ||||||| || || | || | ||||||| |||||||||| | Sbjct 3659 CCACAATACGCTCTCCAAAAGTTGCACTCTTGCTAGCAATCCACTGCAGAGCCCAATCTG 3718 Query 32860 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGT 32907 ||||| | ||||| || |||| || || ||||||||||| | | ||| Sbjct 3719 CCTTCCTCTTTACGCATGGCAGAGTTTCAATAGCATTAAACAAAAAGT 3766 Score = 118 bits (130), Expect = 1e-21 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 |||| | | |||||| || ||||| | | |||||| || || |||| || || ||||| Sbjct 4383 ATCTCTGATATATGTGTCTATCAACAAAGAATACATCTCAGAGTGAACATTCTCCATGGC 4442 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33040 ||||||||||| ||||| ||||| || || || | || |||||| | || | || Sbjct 4443 AATTTGAAATCCATAGAAACATCTGGCTTCAGTGACTTGCACTTCTTGGGAGAACCTCTC 4502 Query 33041 TGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 33100 | | ||||||||| ||||| || ||| ||| ||||| || ||||| ||||| ||||| Sbjct 4503 CACAAGATTTTCATTGACTATCCCATCAGAGGCAGCAAAGAAGGCCAAGACATGCTTTAT 4562 Query 33101 AAAATATTTTTCG 33113 ||||| ||||| Sbjct 4563 AAAATGCCTTTCG 4575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633156387900400