Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_008348.1 Length=168041 Score E Sequences producing significant alignments: (Bits) Value seq49719 412 4e-110 >seq49719 Length=92225 Score = 412 bits (456), Expect = 4e-110 Identities = 821/1203 (68%), Gaps = 21/1203 (2%) Strand=Plus/Minus Query 51245 GTCGCCCAGGCCCTCGTGCATGGCGTTCAGTAGGTCGCCGTTGTCAGCGTCGATTTCCCA 51304 || |||||| ||| || ||||||||||| ||||| |||||||| |||||||| ||||| Sbjct 81180 GTTGCCCAGACCCATGTTCATGGCGTTCAAGAGGTCACCGTTGTCGGCGTCGATCTCCCA 81121 Query 51305 CGCAAACAATCCCGCCAACCCGTTCGCAAGCACGTACTGGCCCTTGGCGCGAACGGATCG 51364 ||| |||| || ||||| ||| |||||| | |||||| || |||||||| Sbjct 81120 CGCGAACAGACCTCCCAACTTGTTGTTCCTCACGTATTTGCCCTTCTCGATAACGGATCT 81061 Query 51365 AGCGTTGTCGAACGTGATCAGGTTGCCCGCGATCGGTTC-GAAGCCGTACGCAGCCTCGG 51423 | ||| ||| | ||||| |||| |||| | | | | ||| |||| | ||||| | Sbjct 81060 TGGGTTATCGTAAGTGATGAGGTC-CCCGGTAGCCTTCCTGAACACGTATGGAGCCTGCG 81002 Query 51424 CGATCAGATCGTAGTAGAACTCGTAGT---CTTTGACGAACTCGTTCGCGATCTGCCGAT 51480 | | ||| || | |||||| | | | | | | | |||| || |||| | | Sbjct 81001 CCACGTTATCATAATGGAACTCCCACTTACCCTGGGCTATTTCGTCGGCAATCTCTCTGT 80942 Query 51481 AGTCGACCACCCCATTTTCCCAGGTGCCTTCGATGGGTCCGCCGGCGACGCCGCTGAACC 51540 |||| || || || | | |||||| || | || |||||| ||||||||| |||| Sbjct 80941 AGTCCACGACACCGTCCTGCCAGGTTCCCTTGACTGGTCCGGTCGCGACGCCGGTGAAGG 80882 Query 51541 AGTTCGGTTCGTAGTCGTAG--CCGGTCACGTTCGACCAGCCGCGAGCGTACATCGCCAC 51598 ||| ||| || |||| | || | | | |||||| ||| ||||||| ||||| Sbjct 80881 GGTT--GTTGTCTGT-GTAGTTCTGGACTCCG--GTCCAGCCACGACCGTACATGGCCAC 80827 Query 51599 GCCGACGACGATCTTCTGATTGCGCACGCCCTGTTCGAGAAGCGACGACACGGCATAGTC 51658 ||||| | |||||||| | | ||| ||||| |||| || | || | | || Sbjct 80826 TCCGACAATGATCTTCTTAGGGTTCACTCCCTGAGCGAGCAGGTATTGGACTCCGAAATC 80767 Query 51659 GGTGGTGTACTTTTCGTCGGGGTTCCATTGGGGCGCGAACAGTGTGGTCTGGTAGCCCAG 51718 | ||||| | || | ||| |||| || ||| |||||| ||| |||| || || Sbjct 80766 TGATGTGTAAGTCTCCTTGGGCCTCCACGCTGGAGCGTACAGTGGGGTTTGGTGACCGAG 80707 Query 51719 ATCGGTGTTGGACCACGCACCCTTGAAATCGTAGTTCATGAGGAAAATGTAATCCAACTG 51778 | ||||||||| || |||||||| |||||| |||| ||||| |||| |||| | Sbjct 80706 GGTGTCGTTGGACCAGGCTCCCTTGAAGTCGTAGCTCATCAGGAAGATGTGGTCCATGTA 80647 Query 51779 CGTCTGCGCCCGAGCGTAGTCGACGACTTGAATTTTATCGTAGCCCGCGCTGATGGCGCT 51838 |||||||| |||||||| || || || || || | || || || || ||| Sbjct 80646 GTTCTGCGCCTTGTTGTAGTCGATTACCTGGATCTTGTCCCATCCAGCACTAATAGCGGA 80587 Query 51839 GGTCAACAGGTACGAACGGTTC--GTGGCGGCGCTCAACTCGTCGAGCATGTCGCGCAGC 51896 |||| | ||| | ||| || |||||| || |||| ||||| || || ||| Sbjct 80586 TGTCAGCTCGTATTTCC--TTCCGGTCTCGGCGCCCAGTTCGTTCAGCATTTCACGAAGC 80529 Query 51897 TCGGTCAAAAGCGTCACGTACGTCGCACCATCGCGATCGGGATCGCCCAGGTCGGGATTG 51956 || ||| || || |||||| | || || | || | || |||| || ||| Sbjct 80528 TCTTTCATCAGTGTGACGTACACTTCGCCGTCTTTA---GGGCCACCGAGGTGAGGGTTG 80472 Query 51957 GCGCCTTTGCCGCCCGGAAACTCCCAGTCGACGTCGACTCCGTCGAAGAACTTCCAAGTC 52016 || ||||| || || || |||||||| |||| || || ||||||||||||||||| ||| Sbjct 80471 GCACCTTTACCACCAGGGAACTCCCAATCGATATCAACACCGTCGAAGAACTTCCATGTC 80412 Query 52017 AGCAGAAACTCGCGAACCGATTCGACGAAGGTTGCGCGTTTGCTCGCGTCGTGCAGGAAG 52076 |||| || || || || |||| ||| | | ||| | || | | |||| Sbjct 80411 TGCAGGAAGTCTTTTACTGAAGCGACAAAGCGATCTCTTTTAACCTTATCATCAAAGAAG 80352 Query 52077 AAGAACGGATCGGACAGCGTCCAACCGCCGATCGAGGGCAGAATCTTGAGCGAAGGATTG 52136 ||||||||||||| | ||||| || |||| || ||||||||||| | || || Sbjct 80351 AAGAACGGATCGGCTAAGGTCCAGCCACCGACGGAAGGCAGAATCTTTAAGTCGGGCCTG 80292 Query 52137 GCCCGTTTGGCCGCCATCAGCTGTCCAAAGTTTCCCTTGTACGGATCGTTCCAGGCCGAG 52196 ||| |||| | ||||||||| |||||||| |||||||| || || ||||| || Sbjct 80291 GCCTGTTTTAGAGACATCAGCTGACCAAAGTTACCCTTGTAAGGTTCATTCCAACTAGAC 80232 Query 52197 ACGCCTTTCTGCGGTTTCTGCAGCGCCGCCCAGGGATCGTGAATCGTCACCTTAAAGTCC 52256 | || ||||| || |||||||| || ||||| || || ||||| | |||||| |||||| Sbjct 80231 AGACCCTTCTGTGGCTTCTGCAGGGCTGCCCATGGGTCATGAATAGACACCTTGAAGTCC 80172 Query 52257 GACCTGCCCAC-GCACGACCGTTGCAACGCTTCGAAACTGTTGTCGATCGGTTTCAGGCT 52315 | | |||| ||| |||||||||||||| | || || ||||| |||| || Sbjct 80171 TCGC-GACCACTGCAAGACCGTTGCAACGCGGCAAAGCTTCCATCGATTTCCTTCAAACT 80113 Query 52316 GTCGTTGATGCCGTCGCCTCCGCACATGGGAATGAAGCCGTACAGCAGATGCGACAGGTT 52375 ||||||||| || || || || || || |||||||| |||||||| ||||| |||||||| Sbjct 80112 GTCGTTGATACCATCACCACCACAAATAGGAATGAAACCGTACAGAAGATGAGACAGGTT 80053 Query 52376 CGGCAACGGCACCAGATCTACGGGAAAGTTGCGCAAGTAAACGCCCCATTCGACAAAGTA 52435 |||| || | | ||| || || || || | | || || ||||| ||||| ||||| Sbjct 80052 GGGCACTGGAATCTTATCAACTGGGAATTTCCTCGGATAGACTCCCCACTCGACGAAGTA 79993 Query 52436 GGC 52438 || Sbjct 79992 TGC 79990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537199668318040