Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq33365 214 2e-50 seq53824 141 1e-28 seq2215 136 4e-27 seq38429 132 5e-26 >seq33365 Length=5281 Score = 214 bits (236), Expect = 2e-50 Identities = 187/228 (82%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 93355 ATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGC 93414 ||||| || ||||| || || |||| ||||||||| ||||| || ||||||||||| || Sbjct 4383 ATCTCTGATATATGTGTCTATCAACAAAGAATACATCTCAGAGTGAACATTCTCCATGGC 4442 Query 93415 AATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTC 93474 |||||| ||||| ||||||||||| ||||| |||| ||||||||||| || || ||||| Sbjct 4443 AATTTGAAATCCATAGAAACATCTGGCTTCAGTGACTTGCACTTCTTGGGAGAACCTCTC 4502 Query 93475 TACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTAT 93534 || ||||||||||||||||| ||||| || || ||||| || ||||| | ||||||||| Sbjct 4503 CACAAGATTTTCATTGACTATCCCATCAGAGGCAGCAAAGAAGGCCAAGACATGCTTTAT 4562 Query 93535 AAAATG--TTTCTCATCATC-TTTAAGCTTATCCCAATCGGATAGATC 93579 |||||| |||| || ||| ||||| ||| |||||||| || | ||| Sbjct 4563 AAAATGCCTTTCGCA--ATCTTTTAAACTT-TCCCAATCTGAGAAATC 4607 Score = 154 bits (170), Expect = 2e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 93116 TCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTG 93175 || |||||||| || || ||||| |||||||| || || || | || || || ||||| Sbjct 3541 TCATCTCGTGAAATTAATTCATTACTGAATGTCAATCCAGGCATTAGGCCGCGCTTCTTC 3600 Query 93176 AGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCC 93235 | ||| |||||||| |||||||| |||||||| ||||| || || || |||||||||||| Sbjct 3601 AACCAGAATATTGATGCAAAACTGCCAGAAAAGAATATTCCCTCAACAGCTGCAAATGCC 3660 Query 93236 ACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCT 93295 |||||||| || ||||| |||| || || ||||| | | ||||||||| || Sbjct 3661 ACAATACGCTCTCCAAAAGTTGCACTCTTGCTAGCAATCCACTGCAGAGCCCAATCTGCC 3720 Query 93296 TTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAA 93333 || |||| | || || || ||||| ||||| ||||| Sbjct 3721 TTCCTCTTTACGCATGGCAGAGTTTCAATAGCATTAAA 3758 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 93581 TTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCC 93640 ||||| ||||| ||||||||||| ||||| || || ||||| || ||||||||||| ||| Sbjct 4931 TTTGATAGATCTACTTCTTCGACTGTCCAGAAAGAAGCTTCAGCCTTTTTGTACATTTCC 4990 Query 93641 CATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAAC 93700 || || || |||||| ||| || || ||||| || || ||| || ||| | | | Sbjct 4991 CAAATATCGGGATATTTAATGGGGAAAATGACGAATCGGCGAGGATTTTCTCTCAAAAGG 5050 Query 93701 GGCTCTAGTTGTGGGTCAAA 93720 || || | ||| || ||||| Sbjct 5051 GGTTCCAATTGAGGATCAAA 5070 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 92927 TCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTACA 92986 || || |||||||| ||||| | ||||| | ||||| ||||| || || || |||||| Sbjct 3130 TCTGCAACAAATTCAATGTAGTTGGACATAAGTTCACAGTTCATGCCAAGTAGCCGTACA 3189 Query 92987 GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTATT 93046 || || || || || | ||| || | |||||| || || || || || | ||| | || | Sbjct 3190 GGCAGTGCATCTGTAAGGAATTCCTGCTCGATCACTACAGCATCCTTGATGATCTTTAGT 3249 Query 93047 ACTCTACTATTTGGT-GGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGT 93105 || | || ||| | || || || || | || ||| |||| | || ||||||||||| Sbjct 3250 ACA-TGCTCCTTGCTTGGCTTCTGCACTAGATGTTTGAACATGAGACAAGCAAAGTCGGT 3308 Query 93106 ATGTAAACC 93114 || | ||| Sbjct 3309 GTGAAGACC 3317 >seq53824 Length=977957 Score = 141 bits (156), Expect = 1e-28 Identities = 102/114 (89%), Gaps = 4/114 (4%) Strand=Plus/Plus Query 126241 CTCGAATTTTGCGC-TTCTATTTA-CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGAT 126298 |||||| ||||| | ||||| | | ||||||||||||||||||||||||||||||||||| Sbjct 541365 CTCGAAATTTGCACATTCTAGTCAACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGAT 541424 Query 126299 TTAAGATCTGGTTCCC--TCGGGAGCGTGGGTTCGAACCCCACACCTGACAAAT 126350 ||||| |||||||||| ||||||||||||||||||||||||||||||| || Sbjct 541425 TTAAGCTCTGGTTCCCGAGAGGGAGCGTGGGTTCGAACCCCACACCTGACAGAT 541478 >seq2215 Length=648410 Score = 136 bits (150), Expect = 4e-27 Identities = 107/126 (85%), Gaps = 3/126 (2%) Strand=Plus/Minus Query 126245 AATTTTGCGCTTCTATTTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGA 126304 |||||||| || | | | ||||||||||||||||||||||||||||||||||||||| Sbjct 365661 AATTTTGCCATTTTGCTCA-AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGC 365603 Query 126305 TCTGGTTCCC--TCGGGAGCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAAT 126362 |||||||||| ||||||||||||||||||||||||||||||||| | || || | Sbjct 365602 TCTGGTTCCCGAGAGGGAGCGTGGGTTCGAACCCCACACCTGACAAACTGTTGGTGACTT 365543 Query 126363 TTTTGT 126368 |||||| Sbjct 365542 TTTTGT 365537 Score = 129 bits (142), Expect = 7e-25 Identities = 80/85 (94%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 361308 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 361367 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||| Sbjct 361368 GTGGGTTCGAACCCCACACCTGACA 361392 >seq38429 Length=390089 Score = 132 bits (146), Expect = 5e-26 Identities = 82/87 (94%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 220429 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 220370 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||||||||||||||| Sbjct 220369 GTGGGTTCGAACCCCACACCTGACAAA 220343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556442813322760