Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq40325 95.1 2e-14 seq28254 93.3 9e-14 seq55291 91.5 3e-13 seq54393 91.5 3e-13 seq46541 91.5 3e-13 seq44741 91.5 3e-13 seq42537 91.5 3e-13 seq40256 91.5 3e-13 seq10802 91.5 3e-13 seq3746 91.5 3e-13 seq2168 91.5 3e-13 seq1082 91.5 3e-13 seq1044 91.5 3e-13 seq52952 89.7 1e-12 seq48365 89.7 1e-12 seq38195 89.7 1e-12 seq8404 89.7 1e-12 seq7406 89.7 1e-12 >seq40325 Length=136505 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 ||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 112751 ATAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 112810 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 112811 AGCCCCACGTTGGGC 112825 >seq28254 Length=66876 Score = 93.3 bits (102), Expect = 9e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 25623 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 25682 Query 142563 CCCCACATCGGGCAGA 142578 |||||| | |||| || Sbjct 25683 CCCCACGTTGGGCGGA 25698 >seq55291 Length=35915 Score = 91.5 bits (100), Expect = 3e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 142047 ACGCATGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGT 142106 || || ||| |||||||||| ||| ||||||||||||||||||||||||||| | |||| Sbjct 13584 ACACAAGTCCCTGTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGTGGGT 13525 Query 142107 TCGACCCCCGCCAGAGACGC 142126 |||| |||| |||| || || Sbjct 13524 TCGATCCCCACCAGGGATGC 13505 Score = 89.7 bits (98), Expect = 1e-12 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 142050 CATGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCG 142109 |||||| ||| |||||| ||||||||||||||||||||||||||||||| | ||||||| Sbjct 12584 CATGTCCCTGAGGCGCAGAGGACAGCGCGTTGGACTTCTAATCCAAAGGTCGTGGGTTCG 12643 Query 142110 ACCCCCGCCAGAGACGC 142126 | || | |||| || || Sbjct 12644 ATCCTCACCAGGGATGC 12660 >seq54393 Length=699020 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 583252 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 583193 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 583192 CCCCACGTTGGGC 583180 >seq46541 Length=55064 Score = 91.5 bits (100), Expect = 3e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 142047 ACGCATGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGT 142106 || || ||| |||||||||| ||| ||||||||||||||||||||||||||| | |||| Sbjct 62 ACACAAGTCCCTGTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGTGGGT 121 Query 142107 TCGACCCCCGCCAGAGACGC 142126 |||| |||| |||| || || Sbjct 122 TCGATCCCCACCAGGGATGC 141 >seq44741 Length=772673 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 224872 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 224813 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 224812 CCCCACGTTGGGC 224800 >seq42537 Length=316581 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 206093 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 206034 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 206033 CCCCACGTTGGGC 206021 >seq40256 Length=2834 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 1695 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1754 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 1755 CCCCACGTTGGGC 1767 >seq10802 Length=1383834 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 883735 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 883794 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 883795 CCCCACGTTGGGC 883807 >seq3746 Length=904159 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 720017 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 719958 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 719957 CCCCACGTTGGGC 719945 >seq2168 Length=53018 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 21167 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 21108 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 21107 CCCCACGTTGGGC 21095 >seq1082 Length=161329 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 53908 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 53849 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 53848 CCCCACGTTGGGC 53836 >seq1044 Length=171551 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 8362 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 8421 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 8422 CCCCACGTTGGGC 8434 >seq52952 Length=179667 Score = 89.7 bits (98), Expect = 1e-12 Identities = 74/88 (84%), Gaps = 3/88 (3%) Strand=Plus/Minus Query 142039 GGCAT-TAAACGCAT--GTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAA 142095 ||||| | |||||| ||| |||||||||| ||| ||||||||||||||||||||||| Sbjct 158204 GGCATGTCAACGCAACAGTCCCTGTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAA 158145 Query 142096 AGGTTGCGGGTTCGACCCCCGCCAGAGA 142123 |||| | |||||||| |||| |||| || Sbjct 158144 AGGTCGTGGGTTCGATCCCCACCAGGGA 158117 >seq48365 Length=162453 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 146355 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 146414 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 146415 CCCACGTTGGGC 146426 >seq38195 Length=828330 Score = 89.7 bits (98), Expect = 1e-12 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 142053 GTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACC 142112 ||| |||||||||| ||| ||||||||||||||||||||||||||| | |||||||| | Sbjct 502683 GTCCCTGTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGTGGGTTCGATC 502742 Query 142113 CCCGCCAGAGACGCCAG 142129 ||| |||| || || || Sbjct 502743 CCCACCAGGGATGCAAG 502759 Score = 89.7 bits (98), Expect = 1e-12 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 142053 GTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACC 142112 ||| |||||||||| ||| ||||||||||||||||||||||||||| | |||||||| | Sbjct 509992 GTCCCTGTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGTGGGTTCGATC 510051 Query 142113 CCCGCCAGAGACGCCAG 142129 ||| |||| || || || Sbjct 510052 CCCACCAGGGATGCAAG 510068 >seq8404 Length=1966717 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 408603 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 408662 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 408663 CCCACGTTGGGC 408674 >seq7406 Length=427096 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 8019 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 7960 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 7959 CCCACGTTGGGC 7948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027046005171209