Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_008689.1 Length=44857 Score E Sequences producing significant alignments: (Bits) Value seq11956 176 1e-39 >seq11956 Length=1081 Score = 176 bits (194), Expect = 1e-39 Identities = 225/305 (74%), Gaps = 4/305 (1%) Strand=Plus/Plus Query 40987 AGAAAAAGTAAATATGAAGAACAAAAATCGATTCTTA-AAGATAGAAATAGCTTTTCTAA 41045 |||||| |||||||||| | || ||||| || |||| |||| ||||||||||| Sbjct 771 AGAAAACAAAAATATGAAGCTTACAAC-CGATTGTTTCAAGAACGAAACAGCTTTTCTAA 829 Query 41046 AACTGATCATGATGCAACTTTTATGAGAATGAAGGAAGACCATATGAAAAATGGCCAACT 41105 ||| ||| ||||| ||||||||| ||||||| || ||| | ||| ||||| || | Sbjct 830 AACAGATACAGATGCCACTTTTATGCGAATGAAAGACGACTACATGCGCAATGGTCAGTT 889 Query 41106 TAAGCCAGGATACAATTTACAAATAGCGACAAATTCTCAATTTGTTTTATCCTATGACCT 41165 |||||||| |||||||||||||| || ||| | ||| | ||| || | ||||| || Sbjct 890 AAAGCCAGGCTACAATTTACAAATCGCAACAGAAAATCAGTATGTCTTGGCTTATGATCT 949 Query 41166 ATTTCAAAACCCGACAGATACTAGAACTTTAATTCCATTTTTA-ACAATGATTCAAAATA 41224 ||| | ||| || ||||| || | ||| |||| ||| || ||| ||| || | | | Sbjct 950 ATTCCCAAATCCAACAGACACAAAAACCTTAAATCCGTTCTTAGACAGCTTTTTAGAGCA 1009 Query 41225 CCTTCGGTTATTTACCGGAGTATATTGTAGCTGATGCAGGTTATGGTAGTGAGCAAAACT 41284 | | | | ||||| || |||||||| |||||||| |||||||||||||| |||| | Sbjct 1010 AC-ACAATGAATTACCTGAATATATTGTGGCTGATGCCGGTTATGGTAGTGAAGAAAATT 1068 Query 41285 ATATG 41289 ||||| Sbjct 1069 ATATG 1073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143318529227022