Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq25588 107 5e-20 seq30106 77.0 8e-11 >seq25588 Length=139073 Score = 107 bits (118), Expect = 5e-20 Identities = 235/348 (68%), Gaps = 3/348 (1%) Strand=Plus/Minus Query 3160 CTGCACGCGCAAAACTCTTACGCCTACAAATACTTTGGCTGCGAGCTGCTAAACTTTGTC 3219 |||||| |||| |||| ||||| | | | ||| ||||||| |||| ||||| || Sbjct 59749 CTGCACACGCAGAACTTCTACGCGTTCCGCTTCTTCATCTGCGAGGTGCTGAACTTCATC 59690 Query 3220 AACGTTGTCGCACAGATATGCTTCATGAATGCCTTTATAGGCGAAGACTTTTTGTTGTAC 3279 ||||| || | ||||| | |||| || | ||| | | || || || | |||| Sbjct 59689 AACGTGGTGGGGCAGATCTACTTCGTGGACTTCTTCCTGGACGGCGAGTTCTCCACGTAC 59630 Query 3280 GGAATCTATGTTACCTTCTTCAACCAGGAAGCCGCCCATCCGAACATGACGAACCCCATG 3339 || | | || ||||| || | | |||| || | ||||| ||||||| Sbjct 59629 GGCCGCGACGTGGTGCGCTTCACGGAG-ATGGAGCCCGAG-GAGCGCGACGA-CCCCATG 59573 Query 3340 AAGCGAGTCTTTCCAACAATCACTCGATGTACTTTTCACAAATACGGTCCTTCGGGCTCC 3399 ||| ||||| || | ||||| || || || ||||| ||||| || || ||| || Sbjct 59572 GCGCGCGTCTTCCCCAAGATCACCAAGTGCACGTTCCACAAGTACGGACCCTCTGGCACC 59513 Query 3400 CTGGAAAACTACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGAAGATCTAC 3459 || | || | ||| || || ||| | ||||| ||| | |||||||||||||||||| Sbjct 59512 GTGCAGAAGTTCGACGGCCTGTGCGTGCTCCCCCTCAACATAGTCAACGAGAAGATCTAC 59453 Query 3460 ATTTTCCTCTGGTTCTGGTTCTACGTGCTAGCCATCATCAGCGGTATC 3507 | ||||| |||||||||||| | | || ||||| | ||||| ||| Sbjct 59452 GTGTTCCTGTGGTTCTGGTTCATCATCCTGTCCATCCTGAGCGGCATC 59405 Score = 82.4 bits (90), Expect = 2e-12 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 2675 CCGTGAAGGGCTTAATAAAGCTTCCAACAGTCTCCATCGACAATGTATTCTTCCGGTTGC 2734 |||||||||| | | ||||| | || | ||||||||| | |||||| ||| Sbjct 60237 CCGTGAAGGGGCTGCTCAAGCTCGACTCGGTGTGCATCGACAACAATGTGTTCCGGCTGC 60178 Query 2735 ATTACCAGTTCACCGTGATCATCCTCATCGCGTTTTCATTGCTGGTGACTTCGCGGCAGT 2794 | ||| || |||||| |||||||||||||| || || ||||||| || ||||| |||| Sbjct 60177 ACTACAAGGCCACCGTCATCATCCTCATCGCCTTCTCGCTGCTGGTCACCTCGCGCCAGT 60118 Query 2795 ACTTCGGAAAGCTCATAGATTGC 2817 || |||| | | ||| || ||| Sbjct 60117 ACATCGGCGACCCCATCGACTGC 60095 >seq30106 Length=258691 Score = 77.0 bits (84), Expect = 8e-11 Identities = 84/112 (75%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 3367 TGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATC 3426 || || || ||||| | ||||||||||||||| | | || |||| | || || | Sbjct 185356 TGCACATTCCACAAGTTCGGTCCTTCGGGCTCAATTCAGAAGCACGACGCTCTATGTGTG 185297 Query 3427 CTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGT 3478 ||| | |||| | ||||||||||||||| ||| |||||||||||||||| Sbjct 185296 CTCGCCTTGAACATTCTCAACGAGAAGATCTTCATATTCCTCTGGTTCTGGT 185245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12471803311500