Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_008993.1 Length=5530 Score E Sequences producing significant alignments: (Bits) Value seq31379 80.6 9e-12 seq4816 78.8 3e-11 >seq31379 Length=374204 Score = 80.6 bits (88), Expect = 9e-12 Identities = 96/128 (75%), Gaps = 3/128 (2%) Strand=Plus/Minus Query 3936 TTTTCTGCCCTCCATCCGGAAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGAAGTTGCC 3995 |||| ||||||||| |||||| | ||| ||||| |||||||||||||||| || | Sbjct 57788 TTTTTTGCCCTCCAAGCGGAAAAGGCCAATTTTCGTCGCGCTGCGCTAAACGAAATTCTC 57729 Query 3996 ACATTCCGGCTACGTCGGGTAGAAAAATAGTGTACATACCTCGGCCA--GAAAAAAGTAA 4053 ||||| |||||| | ||||||||||| ||| |||| | || ||| ||| || Sbjct 57728 GTTTTCCGCTTACGTCAGATAGAAAAATAGAACACACACCTTGATCAGTGAACTAAG-AA 57670 Query 4054 AGCCTCAG 4061 |||||||| Sbjct 57669 AGCCTCAG 57662 >seq4816 Length=602866 Score = 78.8 bits (86), Expect = 3e-11 Identities = 102/140 (73%), Gaps = 1/140 (1%) Strand=Plus/Plus Query 3936 TTTTCTGCCCTCCATCCGGAAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGAAGTTGCC 3995 |||| || ||||| |||||| || ||| ||| | ||||||||||||||||| | | Sbjct 330487 TTTTTTGTCCTCCGGGCGGAAAACGACAATTTTAGTCCCGCTGCGCTAAACGAAAATTTC 330546 Query 3996 ACATTCCGGCTACGTCGGGTAGAAAAATAGTGTACATACCTCGGCCAG-AAAAAAGTAAA 4054 ||||| ||||||| |||||||||| ||| | |||| ||| || | ||| Sbjct 330547 GTTTTCCGCTTACGTCGCACGGAAAAATAGTATACGCAACTCGATCAGTGAAGGAAAAAA 330606 Query 4055 GCCTCAGACCACATGTTTGT 4074 |||||||| |||||| |||| Sbjct 330607 GCCTCAGATCACATGGTTGT 330626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17572451076075