Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq9515 123 2e-23 seq48425 96.9 3e-15 >seq9515 Length=717559 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 20243 GTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCC 20302 |||| ||| || | ||||| || | || ||||| ||||| || ||||| ||||| ||| Sbjct 249580 GTAATATGTGCTATCATATGTGTGAGAAGAGAATAACTGGCTATATTAAATGGAACGCCC 249639 Query 20303 AAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAA 20362 || ||||| ||| | |||||||||| ||||||| || || || ||||||||||| Sbjct 249640 AATCCCATATCTGCACTTCTCTGATACATGAGACAGGACAGTTCTCCATCAGCTACATAG 249699 Query 20363 AATTG-ACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCA 20421 || || ||| | |||| ||||| || | ||||| | | ||| | |||||||| Sbjct 249700 AACTGTACA-AGGCAGTGGCAGGGTGGCAATGCCATTTTCTTAAGGTCAGGTGGGTTCCA 249758 Query 20422 CGCACACATAATGATTCTTCTATCGTGCGGATTATTT 20458 || |||||| | ||||||||||| | ||||||||| Sbjct 249759 CGAACACATCAGCATTCTTCTATCATTGGGATTATTT 249795 >seq48425 Length=361859 Score = 96.9 bits (106), Expect = 3e-15 Identities = 230/344 (67%), Gaps = 13/344 (4%) Strand=Plus/Minus Query 20245 AACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAA 20304 ||| || |||| ||| | ||| || || |||| || | || || ||||| || ||||| Sbjct 41103 AACGTGTGCAATCATTTGAGTCAATAGACAATAACTAGTTATATTCAAAGGTACACCCAA 41044 Query 20305 ACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAG---CTCACCGTCAGCTACATA 20361 |||||||||| | | ||||| | ||||| ||||| || |||| |||| || Sbjct 41043 ACCCATGTCTGCACTGCGTTGATATAAATGACACGAAAGAGTATCTCCGTTTTCTACGTA 40984 Query 20362 AAATTG-ACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCC 20420 |||||| ||| ||||| || || || || ||||||||| || ||| ||||||| Sbjct 40983 AAATTGAACAAAACAA-TGGCACGGAGGCAGCGCCATCTTGTCCACATCCATGGGGTTCC 40925 Query 20421 ACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAA----ATCCACAATG 20476 | || ||| || ||||| | || | ||||| | ||||| || || ||| Sbjct 40924 ATGCGGTCATTATAATTCTACGATTATTCGGATCCGTATTTATCAATCGTATACAC---- 40869 Query 20477 TACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCC 20536 | | ||| || || | |||||| || || |||| | ||||| | |||| || Sbjct 40868 TCGGCCAACTGATCGATTCCCTGGTTCGTGTAATCAGTTTTGGCGTCAATATACGTGGCG 40809 Query 20537 CCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCC 20580 || | || | ||| ||| | || |||| ||||||||||| || Sbjct 40808 CCGTAATGTCGCCATTGGGATCCATAAATGGGTCCCAAATCACC 40765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441041500059160