Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21]
60,049 sequences; 728,788,927 total letters
Query= NC_009333.1
Length=137969
Score E
Sequences producing significant alignments: (Bits) Value
seq9515 123 2e-23
seq48425 96.9 3e-15
>seq9515
Length=717559
Score = 123 bits (136), Expect = 2e-23
Identities = 159/217 (73%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 20243 GTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCC 20302
|||| ||| || | ||||| || | || ||||| ||||| || ||||| ||||| |||
Sbjct 249580 GTAATATGTGCTATCATATGTGTGAGAAGAGAATAACTGGCTATATTAAATGGAACGCCC 249639
Query 20303 AAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAA 20362
|| ||||| ||| | |||||||||| ||||||| || || || |||||||||||
Sbjct 249640 AATCCCATATCTGCACTTCTCTGATACATGAGACAGGACAGTTCTCCATCAGCTACATAG 249699
Query 20363 AATTG-ACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCA 20421
|| || ||| | |||| ||||| || | ||||| | | ||| | ||||||||
Sbjct 249700 AACTGTACA-AGGCAGTGGCAGGGTGGCAATGCCATTTTCTTAAGGTCAGGTGGGTTCCA 249758
Query 20422 CGCACACATAATGATTCTTCTATCGTGCGGATTATTT 20458
|| |||||| | ||||||||||| | |||||||||
Sbjct 249759 CGAACACATCAGCATTCTTCTATCATTGGGATTATTT 249795
>seq48425
Length=361859
Score = 96.9 bits (106), Expect = 3e-15
Identities = 230/344 (67%), Gaps = 13/344 (4%)
Strand=Plus/Minus
Query 20245 AACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAA 20304
||| || |||| ||| | ||| || || |||| || | || || ||||| || |||||
Sbjct 41103 AACGTGTGCAATCATTTGAGTCAATAGACAATAACTAGTTATATTCAAAGGTACACCCAA 41044
Query 20305 ACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAG---CTCACCGTCAGCTACATA 20361
|||||||||| | | ||||| | ||||| ||||| || |||| |||| ||
Sbjct 41043 ACCCATGTCTGCACTGCGTTGATATAAATGACACGAAAGAGTATCTCCGTTTTCTACGTA 40984
Query 20362 AAATTG-ACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCC 20420
|||||| ||| ||||| || || || || ||||||||| || ||| |||||||
Sbjct 40983 AAATTGAACAAAACAA-TGGCACGGAGGCAGCGCCATCTTGTCCACATCCATGGGGTTCC 40925
Query 20421 ACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAA----ATCCACAATG 20476
| || ||| || ||||| | || | ||||| | ||||| || || |||
Sbjct 40924 ATGCGGTCATTATAATTCTACGATTATTCGGATCCGTATTTATCAATCGTATACAC---- 40869
Query 20477 TACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCC 20536
| | ||| || || | |||||| || || |||| | ||||| | |||| ||
Sbjct 40868 TCGGCCAACTGATCGATTCCCTGGTTCGTGTAATCAGTTTTGGCGTCAATATACGTGGCG 40809
Query 20537 CCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCC 20580
|| | || | ||| ||| | || |||| ||||||||||| ||
Sbjct 40808 CCGTAATGTCGCCATTGGGATCCATAAATGGGTCCCAAATCACC 40765
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 441041500059160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |