Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq18227 102 1e-16 >seq18227 Length=276284 Score = 102 bits (112), Expect = 1e-16 Identities = 244/366 (67%), Gaps = 5/366 (1%) Strand=Plus/Minus Query 114287 TCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCG 114346 || || || || || ||||| | ||||| || | ||||||||||| || || ||| Sbjct 241094 TCGGCCAGTCCCTGAACACCAATACCAATAGGCCTGTGTCTCATATTCGAATTCTTAGC- 241036 Query 114347 GTCT-CCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTT 114405 ||| || ||||| || ||| ||| |||| | |||| ||||| |||| || || Sbjct 241035 TTCTGGTACTGGATAGAAGTTCACATCAATAATTTTGTTTAAATTTTGTGTGATGACTTT 240976 Query 114406 TGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGG 114465 || ||||| | | ||| | ||| | || | | ||||| || ||| || || Sbjct 240975 TGATATTTCTTTTAATTTTGTGAAATTATAAGT---TTTGTCTTCGTTTACAAACATATT 240919 Query 114466 AAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAAT 114525 | || ||||| || | |||||| |||| ||||| | | |||||| || | ||| Sbjct 240918 CAAAGCTATTGAAGCTAAATTACATACAGCCACTTCATCTTCAGAAGTGTATTCAACAAT 240859 Query 114526 TTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTT 114585 ||| ||||| | ||| | ||||| || || || || |||||||| || |||| Sbjct 240858 TTCAGTACAGAGATTGCTGCATTTAATCGTTCCTAAATTTTTTTGATTGCTTTTCCTGTT 240799 Query 114586 ACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGC 114645 || | || ||||| | ||||||||| || || ||||| ||||| | | |||||| Sbjct 240798 GCAGGAGTCTTTGTATAACATGTATGGTGTTCCAGTCTCTACTTGGGCTTCTATAATAGC 240739 Query 114646 CTTCCA 114651 ||||| Sbjct 240738 TTTCCA 240733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596905218920920