Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq18227 91.5 1e-13 seq57476 87.8 1e-12 seq43920 86.0 5e-12 seq48643 84.2 2e-11 seq43888 82.4 6e-11 >seq18227 Length=276284 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 108448 CAGAACACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACG 108507 ||||||| || | | ||||||| ||| ||||| || |||||||| | || || || Sbjct 49843 CAGAACAAAATATTGGACTGGGTGCGCGACCACAGAGTACACCACAAATGTTCAGAGACC 49902 Query 108508 ACGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATG 108567 |||| || || |||||||||||| | || |||| ||||||||| | || ||||| ||| Sbjct 49903 TCGGCAGATCCTCACAACGCCAACCGCGGCTTCTTCTTCTCGCACATCGGCTGGCTGATG 49962 Query 108568 ATGACCAAGGACCCCGACGTGAT 108590 |||| || | ||| |||| || Sbjct 49963 ATGAAGAAACATCCCCACGTCAT 49985 >seq57476 Length=105575 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 108448 CAGAACACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACG 108507 |||||||| || | | ||||| | ||||| || | |||||||| | ||||| || Sbjct 65512 CAGAACACAATACTTGATTGGGTACGTGATCATAGAATACACCACAAATTTTCTGAGACC 65571 Query 108508 ACGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATG 108567 | || || || |||||||||||| | || |||| ||||||||||| || ||||| ||| Sbjct 65572 AGTGCAGATCCTCACAACGCCAACCGCGGCTTCTTCTTCTCGCACGTCGGCTGGCTGATG 65631 Query 108568 ATGACCAAGGACCCCGACGTGAT 108590 |||| || | ||| |||| || Sbjct 65632 ATGAAGAAACATCCCCACGTCAT 65654 >seq43920 Length=170732 Score = 86.0 bits (94), Expect = 5e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 108886 CTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCCGAG 108945 |||||||| || |||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 107580 CTCGGCGAAGGCTGGCACAACTACCACCACGTGTTCCCCTGGGACTACAAGGCCAGTGAG 107521 Query 108946 TTGGGGAACGAC 108957 |||| ||| || Sbjct 107520 CTGGGCAACTAC 107509 Score = 82.4 bits (90), Expect = 6e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 108883 GCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCC 108942 ||| | |||||||| |||||||||||||||||||||||||| | |||||||| || || Sbjct 118674 GCTATAGGCGAGGGCTGGCACAACTACCACCACGTGTTCCCATGGGACTACAAAGCAGCG 118615 Query 108943 GAGTTGGGGAACGAC 108957 || || |||||| || Sbjct 118614 GAATTAGGGAACTAC 118600 >seq48643 Length=282623 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/217 (70%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 108447 ACAGAACACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACAC 108506 |||| |||||||| | |||| | ||||||| | |||||||||||| | ||||| Sbjct 13870 ACAGGACACCATCTTCGAATGGGCTCGCGATCACCGCACACACCACAAGTACGCGGACAC 13811 Query 108507 GACGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCAT 108566 | |||||||| |||||||| | || || ||| ||||| ||| |||| |||||| | Sbjct 13810 GGACGCCGACCCGCACAACGCAGAGAGAGGCCTCTTCTTCTCCCACATGGGCTGGCTC-T 13752 Query 108567 GATG-ACCAAGGACCCCGACGTGATCTCGGCCGGTCGAAA---AATGGACATGACGGACA 108622 | || | ||| |||| || ||| || | || | || | ||||| ||| ||| Sbjct 13751 GCTGCAAGAAGAACCCAGAAGTGGTC---GAAGGAGGCAAGCGATTGGACCTGAGCGACC 13695 Query 108623 TATACTCCGATCCGGTGGTAGTGTGGCACACCAAGTA 108659 ||||| | |||||||| || ||| || | ||||| Sbjct 13694 TATACGCTGATCCGGTTGTTATGTTCCAAAAGAAGTA 13658 >seq43888 Length=361153 Score = 82.4 bits (90), Expect = 6e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 108889 GGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCCGAGTTG 108948 |||||||| | ||||||||||||||||||||||| | ||||||| ||| || |||||| Sbjct 233658 GGCGAGGGGTTCCACAACTACCACCACGTGTTCCCGTGGGACTACAGGGCGGCGGAGTTG 233717 Query 108949 GGGAACGACT 108958 |||||| ||| Sbjct 233718 GGGAACAACT 233727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381493400650056