Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21]
60,049 sequences; 728,788,927 total letters
Query= NC_011335.1
Length=119343
Score E
Sequences producing significant alignments: (Bits) Value
seq18227 91.5 1e-13
seq57476 87.8 1e-12
seq43920 86.0 5e-12
seq48643 84.2 2e-11
seq43888 82.4 6e-11
>seq18227
Length=276284
Score = 91.5 bits (100), Expect = 1e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 108448 CAGAACACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACG 108507
||||||| || | | ||||||| ||| ||||| || |||||||| | || || ||
Sbjct 49843 CAGAACAAAATATTGGACTGGGTGCGCGACCACAGAGTACACCACAAATGTTCAGAGACC 49902
Query 108508 ACGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATG 108567
|||| || || |||||||||||| | || |||| ||||||||| | || ||||| |||
Sbjct 49903 TCGGCAGATCCTCACAACGCCAACCGCGGCTTCTTCTTCTCGCACATCGGCTGGCTGATG 49962
Query 108568 ATGACCAAGGACCCCGACGTGAT 108590
|||| || | ||| |||| ||
Sbjct 49963 ATGAAGAAACATCCCCACGTCAT 49985
>seq57476
Length=105575
Score = 87.8 bits (96), Expect = 1e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 108448 CAGAACACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACG 108507
|||||||| || | | ||||| | ||||| || | |||||||| | ||||| ||
Sbjct 65512 CAGAACACAATACTTGATTGGGTACGTGATCATAGAATACACCACAAATTTTCTGAGACC 65571
Query 108508 ACGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATG 108567
| || || || |||||||||||| | || |||| ||||||||||| || ||||| |||
Sbjct 65572 AGTGCAGATCCTCACAACGCCAACCGCGGCTTCTTCTTCTCGCACGTCGGCTGGCTGATG 65631
Query 108568 ATGACCAAGGACCCCGACGTGAT 108590
|||| || | ||| |||| ||
Sbjct 65632 ATGAAGAAACATCCCCACGTCAT 65654
>seq43920
Length=170732
Score = 86.0 bits (94), Expect = 5e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 108886 CTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCCGAG 108945
|||||||| || |||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 107580 CTCGGCGAAGGCTGGCACAACTACCACCACGTGTTCCCCTGGGACTACAAGGCCAGTGAG 107521
Query 108946 TTGGGGAACGAC 108957
|||| ||| ||
Sbjct 107520 CTGGGCAACTAC 107509
Score = 82.4 bits (90), Expect = 6e-11
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 108883 GCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCC 108942
||| | |||||||| |||||||||||||||||||||||||| | |||||||| || ||
Sbjct 118674 GCTATAGGCGAGGGCTGGCACAACTACCACCACGTGTTCCCATGGGACTACAAAGCAGCG 118615
Query 108943 GAGTTGGGGAACGAC 108957
|| || |||||| ||
Sbjct 118614 GAATTAGGGAACTAC 118600
>seq48643
Length=282623
Score = 84.2 bits (92), Expect = 2e-11
Identities = 151/217 (70%), Gaps = 8/217 (4%)
Strand=Plus/Minus
Query 108447 ACAGAACACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACAC 108506
|||| |||||||| | |||| | ||||||| | |||||||||||| | |||||
Sbjct 13870 ACAGGACACCATCTTCGAATGGGCTCGCGATCACCGCACACACCACAAGTACGCGGACAC 13811
Query 108507 GACGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCAT 108566
| |||||||| |||||||| | || || ||| ||||| ||| |||| |||||| |
Sbjct 13810 GGACGCCGACCCGCACAACGCAGAGAGAGGCCTCTTCTTCTCCCACATGGGCTGGCTC-T 13752
Query 108567 GATG-ACCAAGGACCCCGACGTGATCTCGGCCGGTCGAAA---AATGGACATGACGGACA 108622
| || | ||| |||| || ||| || | || | || | ||||| ||| |||
Sbjct 13751 GCTGCAAGAAGAACCCAGAAGTGGTC---GAAGGAGGCAAGCGATTGGACCTGAGCGACC 13695
Query 108623 TATACTCCGATCCGGTGGTAGTGTGGCACACCAAGTA 108659
||||| | |||||||| || ||| || | |||||
Sbjct 13694 TATACGCTGATCCGGTTGTTATGTTCCAAAAGAAGTA 13658
>seq43888
Length=361153
Score = 82.4 bits (90), Expect = 6e-11
Identities = 60/70 (86%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 108889 GGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCCGAGTTG 108948
|||||||| | ||||||||||||||||||||||| | ||||||| ||| || ||||||
Sbjct 233658 GGCGAGGGGTTCCACAACTACCACCACGTGTTCCCGTGGGACTACAGGGCGGCGGAGTTG 233717
Query 108949 GGGAACGACT 108958
|||||| |||
Sbjct 233718 GGGAACAACT 233727
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 381493400650056
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |