Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq18227 100 3e-16 >seq18227 Length=276284 Score = 100 bits (110), Expect = 3e-16 Identities = 245/368 (67%), Gaps = 5/368 (1%) Strand=Plus/Minus Query 116248 TCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCG 116307 || || || || || ||||| | ||||| || | ||||||||||| || || ||| Sbjct 241094 TCGGCCAGTCCCTGAACACCAATACCAATAGGCCTGTGTCTCATATTCGAATTCTTAGC- 241036 Query 116308 GTCT-CCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTT 116366 ||| || ||||| || ||| ||| |||| | |||| ||||| |||| || || Sbjct 241035 TTCTGGTACTGGATAGAAGTTCACATCAATAATTTTGTTTAAATTTTGTGTGATGACTTT 240976 Query 116367 TGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGG 116426 || ||||| | | ||| | ||| | || | | ||||| || ||| || || Sbjct 240975 TGATATTTCTTTTAATTTTGTGAAATTATAAGT---TTTGTCTTCGTTTACAAACATATT 240919 Query 116427 AAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAAT 116486 | || ||||| || | |||||| |||| ||||| | | |||||| || | ||| Sbjct 240918 CAAAGCTATTGAAGCTAAATTACATACAGCCACTTCATCTTCAGAAGTGTATTCAACAAT 240859 Query 116487 TTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTT 116546 ||| ||||| | ||| | ||||| || || || || |||||||| || |||| Sbjct 240858 TTCAGTACAGAGATTGCTGCATTTAATCGTTCCTAAATTTTTTTGATTGCTTTTCCTGTT 240799 Query 116547 ACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGC 116606 || | || ||||| | ||| ||||| || || ||||| ||||| | | |||||| Sbjct 240798 GCAGGAGTCTTTGTATAACATGTATGGTGTTCCAGTCTCTACTTGGGCTTCTATAATAGC 240739 Query 116607 CTTCCATA 116614 ||||||| Sbjct 240738 TTTCCATA 240731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613046693826840