Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq18227 116 6e-21 >seq18227 Length=276284 Score = 116 bits (128), Expect = 6e-21 Identities = 325/487 (67%), Gaps = 10/487 (2%) Strand=Plus/Minus Query 203840 TTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCG 203899 ||||| || ||||||||||| ||||| ||||||| || |||| | ||||||||| || Sbjct 241826 TTGTCAACTGTGAACTGAATAGCGTTGGCGGCAGGTTTGGTTCTTAAATAGTACATTCCA 241767 Query 203900 GTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGG 203959 ||||| || || | | ||| | || | || || |||| ||||| | || || Sbjct 241766 GTCTTGAGCCCAATTTTCCAGGCATAGAAATGAATTGAAGTTAGTTTCCCGTAATTAGGT 241707 Query 203960 TCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGC 204018 || || | || || || | ||| || || ||||| || ||| || || | ||| || || Sbjct 241706 TCTGCTACATGGATATTGAAAGATTGACTCTGGTCAAT-AAATGCTCCTCTATCCGCAGC 241648 Query 204019 CATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTG 204078 ||| | ||| ||||||| |||||||||||||| || ||| ||| ||||| | | Sbjct 241647 CATTTGAATAGTGGTCTTAACGGAAATCTCCCACACAGTTTTGTACAAATCTCTAATTTC 241588 Query 204079 TTGAGGCACATCTTCCCACGTCCTGATCGAGCCGTTGTCGGCCATCAGTCTCA-TCCTCG 204137 ||| || | || ||| | ||| || || |||| || | | || || || Sbjct 241587 TTGGGGTATATTTTCAATATTTTGGATAGAACCATTGTTATGAAT-AATGACATTCTTCA 241529 Query 204138 TCTCCTCCCCCCACATGCCCAACCTGA-TCAGCTCCCGCACCAGGTGGGGGTTGATGATC 204196 | || || |||||| | || | ||| ||| |||| | | || | || | | Sbjct 241528 TGTCTTCGTCCCACAAG-TCAGCTTGAGTCAAATCCCTGAGTAAATGATGATTCACCACT 241470 Query 204197 TGAAAGTCTCCGGACAGCACCC--CTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACG 204254 ||||| ||||| |||| ||| | || ||| || | ||| | || |||||||| || | Sbjct 241469 TGAAATTCTCCAGACAACACTCTTCTTTGGT-AAATGTTTGAT-GTAAATGGTTCAAATG 241412 Query 204255 CCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGG 204314 || ||||| |||| |||||| || || || || ||||| ||||| || | || | Sbjct 241411 ATTCATTGTTTCCGAGAATCTGTGCTGTAGAAGCAGTTGGCATTGGAGCTAGCAAAAGTG 241352 Query 204315 AGTTGCG 204321 | ||||| Sbjct 241351 AATTGCG 241345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794558346567440