Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21]
60,049 sequences; 728,788,927 total letters
Query= NC_013797.1
Length=108592
Score E
Sequences producing significant alignments: (Bits) Value
seq42682 96.9 2e-15
seq17913 95.1 8e-15
>seq42682
Length=462070
Score = 96.9 bits (106), Expect = 2e-15
Identities = 160/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| ||||| | ||||||||||| || | ||| |||||| || || |||||||| |
Sbjct 302082 CCTCCTCGAAGACGCAGTACCAGGTGAAGAGTAGATTCTTTCTGGATGTTATAATCTG-- 302025
Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610
||| | | | |||| || | || || || |||| || | |||||| || || | |
Sbjct 302024 AAAGGGTTCTTCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGAG 301965
Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670
| | |||||||||||| |||||| ||| | || | | |||||| | ||| |
Sbjct 301964 GGATGCCTTCTTTGTCCTGAATTTTTGCTTTGACATTCTCAATTGTGTCAGATGGTTCAA 301905
Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
| || || ||||| ||||| || || | |||||| || |||||||||||
Sbjct 301904 CCTCTAAGGTAATGGTTTTGCCTGTCAGAGTTTTGACAAAGATCTGCAT 301856
Score = 87.8 bits (96), Expect = 1e-12
Identities = 159/231 (69%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551
||| || || | ||| || || ||||||| || ||| || || || |||||||| |
Sbjct 303679 GCCTCCACGGAGACGTAGAACTAAATGCAGGGTAGATTCCTTCTGGATGTTATAATCAG- 303621
Query 39552 CAAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAG 39609
||| | | | |||| |||| || || || |||| || | |||||| || || |
Sbjct 303620 -AAAGGGTTCTTCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGTTGGTCTGGA 303562
Query 39610 GGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCC 39669
|| | |||||||||||| ||||| |||| || | | ||||| | |||
Sbjct 303561 GGGATGCCTTCTTTGTCCTGAATTTTAGCCTTAACATTCTCAATAGTGTCGGAAGGTTCT 303502
Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720
|| ||||| ||||| |||||||| || | ||||| || ||||||||||||
Sbjct 303501 ACTTCCAATGTAATAGTTTTACCTGTCAGGGTTTTAACAAAGATCTGCATG 303451
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551
||| || || | ||| || || ||||||||||| ||| || || || || || || |
Sbjct 301627 GCCTCCACGGAGACGTAGAACTAAATGCAAAGTAGATTCCTTCTGGATGTTGTAGTCAGA 301568
Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611
| | | | |||| || | ||||| || |||| || | |||||| || || | ||
Sbjct 301567 TAGAGTTCTTCCATCTTCTAGCTGTTTGCCAGCAAAGATGAGACGCTGTTGGTCTGGAGG 301508
Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671
| |||||| || || ||||| ||||| || | | ||||| | ||| ||
Sbjct 301507 GATGCCTTCCTTATCCTGAATTTTAGCTTTAACATTCTCAATAGTGTCGGAAGGTTCTAC 301448
Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720
||||| ||||| |||||||| || | ||||| || ||||||||||||
Sbjct 301447 TTCCAATGTAATAGTTTTACCTGTCAGGGTTTTAACAAAGATCTGCATG 301399
>seq17913
Length=240356
Score = 95.1 bits (104), Expect = 8e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| |||| |||||||||||||||||| | || || ||||| || || || || |
Sbjct 96718 CCACCTCTCAAACGCAGTACCAAATGTAGGGTCGACTCCTTTTGAATGTTGTAGTCTGAT 96659
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
| ||| |||| || | || || ||| | || || | |||||||| || | |||
Sbjct 96658 AGTGTTCGTCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGGGGA 96599
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672
| |||||||||||| ||||| ||| | | | | |||||||| | ||| ||
Sbjct 96598 ATGCCTTCTTTGTCCTGGATTTTAGCTTTGACATTTTCGATTGTGTCTGAGGGTTCAACC 96539
Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|||| || || ||||| || || || ||||||||||| || |||||
Sbjct 96538 TCCAGTGTGATGGTTTTGCCAGTCAAGGTTTTTACGAAAATTTGCAT 96492
Score = 95.1 bits (104), Expect = 8e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| |||| |||||||||||||||||| | || || ||||| || || || || |
Sbjct 97174 CCACCTCTCAAACGCAGTACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCTGAA 97115
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
| |||| |||| || | || || ||| | || || | |||||||| || | |||
Sbjct 97114 AGTGTGCGTCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGGGGA 97055
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672
| |||||||||||| ||||| ||| | | | | |||||| | | ||| ||
Sbjct 97054 ATGCCTTCTTTGTCTTGGATTTTCGCTTTGACATTTTCGATTGTGTCAGAGGGTTCAACC 96995
Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| | || || ||||| || || || ||||||||||| ||||||||
Sbjct 96994 TCGAGTGTGATGGTTTTGCCAGTCAAGGTTTTTACGAAAATCTGCAT 96948
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| |||| |||||||||||||||||| | || || ||||| || || || || |
Sbjct 96946 CCACCTCTCAAACGCAGTACCAAATGTAGGGTCGACTCCTTTTGGATGTTGTAGTCTGAA 96887
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
| |||| |||| || | || || ||| | || || | |||||||| || | ||
Sbjct 96886 AGTGTGCGTCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGA 96827
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672
| |||||||||||| |||||| ||| | | | | ||| || | | ||| ||
Sbjct 96826 ATGCCTTCTTTGTCCTGGATTTTTGCTTTGACATTTTCAATTGTATCAGAGGGTTCAACC 96767
Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| | || || ||||| || || || ||||||||||| ||||||||
Sbjct 96766 TCGAGTGTGATGGTTTTGCCAGTCAAGGTTTTTACGAAAATCTGCAT 96720
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| |||| |||||||||||||||||| | || || ||||| || || || || |
Sbjct 97402 CCACCTCTCAAACGCAGTACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCTGAA 97343
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
| |||| |||| || | || || ||| | || || | |||||||| || | |||
Sbjct 97342 AGTGTGCGTCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGGGGA 97283
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672
| |||||||||||| ||||| ||| | | | | |||||| | | || ||
Sbjct 97282 ATGCCTTCTTTGTCCTGGATTTTAGCTTTGACATTTTCGATTGTGTCAGAGGGCTCAACC 97223
Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| | || || ||||| || || || ||||||||||| ||||||||
Sbjct 97222 TCGAGCGTGATGGTTTTGCCAGTCAAGGTTTTTACGAAAATCTGCAT 97176
Score = 86.0 bits (94), Expect = 4e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| |||| |||||||||||| ||||| | || || ||||| || || || || |
Sbjct 97630 CCACCTCTCAAACGCAGTACTAAATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCTGAA 97571
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
| |||| |||| || | || || ||| | || || | ||||||||||| | ||
Sbjct 97570 AGTGTGCGTCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGATCTGGTGGA 97511
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672
| |||||||||||| ||||| ||| | | | | |||||| | | || ||
Sbjct 97510 ATGCCTTCTTTGTCCTGGATTTTAGCTTTGACATTTTCGATTGTGTCAGAGGGCTCAACC 97451
Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| | || || ||||| || || || ||||||||||| ||||||||
Sbjct 97450 TCGAGTGTGATAGTTTTGCCAGTCAAGGTTTTTACGAAAATCTGCAT 97404
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 347115378535217
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |