Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq42682 96.9 2e-15 seq17913 95.1 8e-15 >seq42682 Length=462070 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | ||||||||||| || | ||| |||||| || || |||||||| | Sbjct 302082 CCTCCTCGAAGACGCAGTACCAGGTGAAGAGTAGATTCTTTCTGGATGTTATAATCTG-- 302025 Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 ||| | | | |||| || | || || || |||| || | |||||| || || | | Sbjct 302024 AAAGGGTTCTTCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGAG 301965 Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | | |||||||||||| |||||| ||| | || | | |||||| | ||| | Sbjct 301964 GGATGCCTTCTTTGTCCTGAATTTTTGCTTTGACATTCTCAATTGTGTCAGATGGTTCAA 301905 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || || ||||| ||||| || || | |||||| || ||||||||||| Sbjct 301904 CCTCTAAGGTAATGGTTTTGCCTGTCAGAGTTTTGACAAAGATCTGCAT 301856 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||| || || ||||||| || ||| || || || |||||||| | Sbjct 303679 GCCTCCACGGAGACGTAGAACTAAATGCAGGGTAGATTCCTTCTGGATGTTATAATCAG- 303621 Query 39552 CAAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAG 39609 ||| | | | |||| |||| || || || |||| || | |||||| || || | Sbjct 303620 -AAAGGGTTCTTCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGTTGGTCTGGA 303562 Query 39610 GGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCC 39669 || | |||||||||||| ||||| |||| || | | ||||| | ||| Sbjct 303561 GGGATGCCTTCTTTGTCCTGAATTTTAGCCTTAACATTCTCAATAGTGTCGGAAGGTTCT 303502 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || ||||| ||||| |||||||| || | ||||| || |||||||||||| Sbjct 303501 ACTTCCAATGTAATAGTTTTACCTGTCAGGGTTTTAACAAAGATCTGCATG 303451 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||| || || ||||||||||| ||| || || || || || || | Sbjct 301627 GCCTCCACGGAGACGTAGAACTAAATGCAAAGTAGATTCCTTCTGGATGTTGTAGTCAGA 301568 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | | | | |||| || | ||||| || |||| || | |||||| || || | || Sbjct 301567 TAGAGTTCTTCCATCTTCTAGCTGTTTGCCAGCAAAGATGAGACGCTGTTGGTCTGGAGG 301508 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | |||||| || || ||||| ||||| || | | ||||| | ||| || Sbjct 301507 GATGCCTTCCTTATCCTGAATTTTAGCTTTAACATTCTCAATAGTGTCGGAAGGTTCTAC 301448 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||||| ||||| |||||||| || | ||||| || |||||||||||| Sbjct 301447 TTCCAATGTAATAGTTTTACCTGTCAGGGTTTTAACAAAGATCTGCATG 301399 >seq17913 Length=240356 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| |||||||||||||||||| | || || ||||| || || || || | Sbjct 96718 CCACCTCTCAAACGCAGTACCAAATGTAGGGTCGACTCCTTTTGAATGTTGTAGTCTGAT 96659 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| || | || || ||| | || || | |||||||| || | ||| Sbjct 96658 AGTGTTCGTCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGGGGA 96599 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||||||||| ||||| ||| | | | | |||||||| | ||| || Sbjct 96598 ATGCCTTCTTTGTCCTGGATTTTAGCTTTGACATTTTCGATTGTGTCTGAGGGTTCAACC 96539 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| || || ||||| || || || ||||||||||| || ||||| Sbjct 96538 TCCAGTGTGATGGTTTTGCCAGTCAAGGTTTTTACGAAAATTTGCAT 96492 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| |||||||||||||||||| | || || ||||| || || || || | Sbjct 97174 CCACCTCTCAAACGCAGTACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCTGAA 97115 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | |||| |||| || | || || ||| | || || | |||||||| || | ||| Sbjct 97114 AGTGTGCGTCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGGGGA 97055 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||||||||| ||||| ||| | | | | |||||| | | ||| || Sbjct 97054 ATGCCTTCTTTGTCTTGGATTTTCGCTTTGACATTTTCGATTGTGTCAGAGGGTTCAACC 96995 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | || || ||||| || || || ||||||||||| |||||||| Sbjct 96994 TCGAGTGTGATGGTTTTGCCAGTCAAGGTTTTTACGAAAATCTGCAT 96948 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| |||||||||||||||||| | || || ||||| || || || || | Sbjct 96946 CCACCTCTCAAACGCAGTACCAAATGTAGGGTCGACTCCTTTTGGATGTTGTAGTCTGAA 96887 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | |||| |||| || | || || ||| | || || | |||||||| || | || Sbjct 96886 AGTGTGCGTCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGA 96827 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||||||||| |||||| ||| | | | | ||| || | | ||| || Sbjct 96826 ATGCCTTCTTTGTCCTGGATTTTTGCTTTGACATTTTCAATTGTATCAGAGGGTTCAACC 96767 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | || || ||||| || || || ||||||||||| |||||||| Sbjct 96766 TCGAGTGTGATGGTTTTGCCAGTCAAGGTTTTTACGAAAATCTGCAT 96720 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| |||||||||||||||||| | || || ||||| || || || || | Sbjct 97402 CCACCTCTCAAACGCAGTACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCTGAA 97343 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | |||| |||| || | || || ||| | || || | |||||||| || | ||| Sbjct 97342 AGTGTGCGTCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGGGGA 97283 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||||||||| ||||| ||| | | | | |||||| | | || || Sbjct 97282 ATGCCTTCTTTGTCCTGGATTTTAGCTTTGACATTTTCGATTGTGTCAGAGGGCTCAACC 97223 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | || || ||||| || || || ||||||||||| |||||||| Sbjct 97222 TCGAGCGTGATGGTTTTGCCAGTCAAGGTTTTTACGAAAATCTGCAT 97176 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| |||||||||||| ||||| | || || ||||| || || || || | Sbjct 97630 CCACCTCTCAAACGCAGTACTAAATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCTGAA 97571 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | |||| |||| || | || || ||| | || || | ||||||||||| | || Sbjct 97570 AGTGTGCGTCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGATCTGGTGGA 97511 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||||||||| ||||| ||| | | | | |||||| | | || || Sbjct 97510 ATGCCTTCTTTGTCCTGGATTTTAGCTTTGACATTTTCGATTGTGTCAGAGGGCTCAACC 97451 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | || || ||||| || || || ||||||||||| |||||||| Sbjct 97450 TCGAGTGTGATAGTTTTGCCAGTCAAGGTTTTTACGAAAATCTGCAT 97404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347115378535217