Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq18227 473 1e-128 seq33365 138 1e-27 seq33683 122 1e-22 >seq18227 Length=276284 Score = 473 bits (524), Expect = 1e-128 Identities = 1166/1771 (66%), Gaps = 26/1771 (1%) Strand=Plus/Minus Query 46967 TTTGTCTTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATA 47026 |||| ||| || || || |||| ||| | || || | ||| |||| |||||| || Sbjct 241833 TTTGGATTTGTCAACTGTGAACTGAATAGCGTTGGCGGCAGGTTTGGTTCTTAAATAGTA 241774 Query 47027 CATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATA 47086 ||| |||||||| | || | |||| |||||||||| || ||||| ||| || Sbjct 241773 CATTCCAGTCTTGAGCCCAATTTTCCAGGCATAGAAATGAATTGAAGTTAGTTTCCCGTA 241714 Query 47087 ACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATC 47146 | ||||||||| | ||| ||||| | |||||||||||| ||||||||||| |||||||| Sbjct 241713 ATTAGGTTCTGCTACATGGATATTGAAAGATTGACTCTGGTCAATAAATGCTCCTCTATC 241654 Query 47147 AGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTT 47206 || ||||| | | | | | | | |||||||| || ||||| || | | | | Sbjct 241653 CGCAGCCATTTGAATAGTGGTCTTAACGGAAATCTCCCACACAGTTTTGTACAAATCTCT 241594 Query 47207 AATGTCTTCTGGGAGATT---AGTATTTTGAATAGATCCTCCgttttctataattttgtt 47263 ||| |||| || | ||| | ||||||| ||||| || ||| | ||||| || Sbjct 241593 AATTTCTTGGGGTATATTTTCAATATTTTGGATAGAACCATTGTTATGAATAATGACATT 241534 Query 47264 ttttaattcatttgacca-aagttttcgttcagttaatgtttttaaAAGATGAGGATTAA 47322 || | || | ||| |||| | || ||| || | | | |||| |||| | Sbjct 241533 CTTCATGTCTTCGTCCCACAAGTCAGC-TTGAGTCAAATCCCTGAGTAAATGATGATTCA 241475 Query 47323 CAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTA 47382 | | ||||||||||||||| | ||||| | || || || |||| ||||||| | Sbjct 241474 CCACTTGAAATTCTCCAGACAACACTCTTCTTTGGTAAATGTTTGATGTAAATGGTTCAA 241415 Query 47383 TAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATA 47442 |||||||| ||||| | ||| || || || || || || ||||| | || | || | Sbjct 241414 ATGATTCATTGTTTCCGAGAATCTGTGCTGTAGAAGCAGTTGGCATTGGAGCTAGCAAAA 241355 Query 47443 AGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGAT 47502 ||| | | |||| ||| || | | |||| | |||||||| Sbjct 241354 GTGAATTGCGAAGGCCATGCTTTGCAATTTTATCTTTGAGCTCTGTCCAGTTCCAAAGAT 241295 Query 47503 CTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCAT 47562 ||| || ||||| | || |||||||| || |||| ||| ||| || | Sbjct 241294 CTGTAGGTGTTTTGTTCCACATGTCGTATTGAAGTATACCTTGACTGGCTGGACTTCCTT 241235 Query 47563 TATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTAT 47622 || || | || ||| | | || || ||||||||||||||||||| || | || Sbjct 241234 CGTAAGTACTGTATACACCTTCTTTTTCTGCTAGTTCACAACTTGCTTCCAGAGCTCCAT 241175 Query 47623 AATATATTGTTTCAAATATTTTTATGTTTAGATTCCTT-GCTT-CTGATGATTCAAAAGG 47680 | || || ||||| ||||| | | || || || | |||| || | |||| | || Sbjct 241174 AGTAAATGGTTTCGAATATCTGT-TGATTCAATAATATCGCTTTCTCACT-TTCATAGGG 241117 Query 47681 ATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATG 47740 ||||| || |||| ||| ||||||||||||||||| || || || Sbjct 241116 CAGTCTCATTAGGACAAATGTGTCGGCCAGTCCCTGAACACCAATACCAATAGGCCTGTG 241057 Query 47741 AGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATT 47800 | |||| ||| || ||||||||||| |||||| ||| | ||| |||||||| || Sbjct 241056 TCTCATATTCGAATTCTTAGCTTCTGGTACTGGATAGAAGTTCACATCAATAATTTTGTT 240997 Query 47801 TAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTATT 47860 || | |||||| ||||||| | |||| | | | || | Sbjct 240996 TAAATTTTGTGTGATGACTTTTGATATTTCTTTTAATTTTGTGAAATTATAAGTTTTGTC 240937 Query 47861 TA---TAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGG 47917 | | |||||| |||| | ||||| || |||| |||||||||||| || |||| | Sbjct 240936 TTCGTTTACAAACATATTCAAAGCTATTGAAGCTAAATTACATACAGCCACTTCATCTTC 240877 Query 47918 ATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTG 47977 | ||| |||| | ||||||| ||| ||||| | ||||| || || || ||||||| Sbjct 240876 AGAAGTGTATTCAACAATTTCAGTACAGAGATTGCTGCATTTAATCGTTCCTAAATTTTT 240817 Query 47978 ATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTAT 48037 ||||| | |||| || | ||| ||||| | ||| | ||||||||||| |||| Sbjct 240816 TTGATTGCTTTTCCTGTTGCAGGAGTCTTTGTATAACATGTATGGTGTTCCAGTCTCTAC 240757 Query 48038 CTGAGATTCAATGATAGATTTCCAAAC------AGTCCTAGCCTTTATAACAGCTCTAGC 48091 || | ||| || |||| |||||| | || | | | | | ||||| || Sbjct 240756 TTGGGCTTCTATAATAGCTTTCCATAATACTTGAGCACGAACTTGTCTAACA----TAA- 240702 Query 48092 TTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATC 48151 ||||| || | ||| ||||| |||||| |||||| || || || | | | Sbjct 240701 -TTATTCTCCTTTTCATATTTTTCATATAAGGCCTCAAACTCTTCTCCCCAGGTGTCAGT 240643 Query 48152 TAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGT 48211 || || || || | || ||| |||||||| ||| | ||| | ||| ||||| | Sbjct 240642 TAGTCCGGGGCAATTATGAGGGCACATCAAGCTCCAGTTTCCATTACTTTCAACTCTTTT 240583 Query 48212 CATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATT 48271 ||| |||| ||| |||||||| | || ||| || ||||||| | | ||| || || Sbjct 240582 CATGAATAAATCAGGTATCCACAAGGCATAAAACAATTCCCTAGCACGAACTTCCTCTTT 240523 Query 48272 GCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATA 48331 |||| ||||| |||| || || ||||| || | |||||| |||||||| |||||||| || Sbjct 240522 GCCAGTATTCTTTTTCAGATCCAGAAACTCAAATATATCCGCATGCCACGGTTCTAAGTA 240463 Query 48332 TATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTT 48391 || ||| | | ||||||| | ||||| ||||||||||| | |||||| || || || || Sbjct 240462 TACTGCAAATGCACCTGGCCTCTTATTTCCTCCTTGATCGACATATCTAGCTGTGTTATT 240403 Query 48392 ATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACT 48451 ||| ||||| | ||| || || | |||||| || | |||||| ||||| | |||| | Sbjct 240402 ATACACTCTGAGCATGGGTACTAGACCATTCGAAACACCATTTGTTCCAGCAATAGTTGT 240343 Query 48452 TCCACTAGCTCTTATATTA-CTAATTGAAATACCTATACCACCTGCCATTTTAGATATTA 48510 || | ||||| || | | || ||| || || ||||| || ||| ||||| | Sbjct 240342 GCCTTTTGCTCTAATGCAATGGACATGCAAT-CCAATCCCACCAGCAGATTTTGATATCA 240284 Query 48511 GAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATA 48570 ||||| | ||||| |||||||| ||||| ||||| || |||||| |||| || || Sbjct 240283 AGGCACATTGCTTAAGAGTATCATATATTCCCTCTATGCTGTCATCTTTCATGGCTATTA 240224 Query 48571 GAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCAT 48630 ||| || || | ||| || | ||| | | || | ||||| |||| Sbjct 240223 AAAAGCATGATGATAATTGAGGTTTGGGAGTGGCAGCTGAGAAGAGAGTTGGGCTGGCAT 240164 Query 48631 GAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATT 48690 || |||| |||| || || | || ||||| || | ||| | | ||| |||||| Sbjct 240163 GAGTAAAATATTTTTCAGACAGTAAATTATAAGTGTTGATAGCTGCATCGATATCCTCCC 240104 Query 48691 GATGTATACCTATAGATACACGCATTAACAT 48721 |||||| || || || |||||||| | ||| Sbjct 240103 CATGTATTCCAATTGAAACACGCATAAGCAT 240073 >seq33365 Length=5281 Score = 138 bits (152), Expect = 1e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 18997 ATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATA 19056 || ||||||||| ||||| || |||||||| || || | || || ||||||||||| Sbjct 3553 ATTAATTCATTACTGAATGTCAATCCAGGCATTAGGCCGCGCTTCTTCAACCAGAATATT 3612 Query 19057 GAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCT 19116 || ||||| |||||||||||||| || || || |||||||| || || | | ||| Sbjct 3613 GATGCAAAACTGCCAGAAAAGAATATTCCCTCAACAGCTGCAAATGCCACAATACGCTCT 3672 Query 19117 CCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACA 19176 ||| || | ||| || || |||||| | ||| |||||||| |||||| | ||||| Sbjct 3673 CCAAAAGTTGCACTCTTGCTAGCAATCCACTGCAGAGCCCAATCTGCCTTCCTCTTTACG 3732 Query 19177 CATGGCATTGTCTCTATAGAATTAAA 19202 ||||||| || || |||| |||||| Sbjct 3733 CATGGCAGAGTTTCAATAGCATTAAA 3758 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/135 (75%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 19445 TATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACA 19504 || |||| |||| |||||||||||| |||||||| |||||||| || || ||||| |||| Sbjct 4927 TACCTTT-GATAGATCTACTTCTTCGACTGTCCAGAAAGAAGCTTCAGCCTTTTTGTACA 4985 Query 19505 TGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAA 19564 | | ||| ||||| |||||| || || || || || |||| ||||||| | | Sbjct 4986 TTTCCCAAATATCGGGATATTTAATGGGGAAAATGACGAATCGGCGAGGATTTTCTCTCA 5045 Query 19565 GAATAGGTTCCATTT 19579 || ||||||| || Sbjct 5046 AAAGGGGTTCCAATT 5060 >seq33683 Length=341392 Score = 122 bits (134), Expect = 1e-22 Identities = 246/362 (68%), Gaps = 5/362 (1%) Strand=Plus/Minus Query 136632 TAATGACTCCTATTAACCCAATGTTGGCAGAATCATGTGAATCTGTAGATAAAGCATTTA 136691 ||||||||||| | |||||| |||| | | | ||| |||||||||| | ||| | | Sbjct 86095 TAATGACTCCTGTCTTGCCAATGCTGGCTGCAGCTTGTAAATCTGTAGAAATGGCAATGA 86036 Query 136692 AAAAGTTTCCAAATGGAATATTTGCAGAAATAAAATATGACGGAGAACGTGTACAGGTTC 136751 |||||| ||| |||||||| ||| ||||||| |||||||| || ||| | || || || | Sbjct 86035 AAAAGTGTCCGAATGGAATGTTTTCAGAAATTAAATATGATGGTGAAAGAGTGCAAGTAC 85976 Query 136752 ACAAGAATGGAAACCACTTTGCATTTTTTAGTAGAAACATGAAACCCGTAACAAAACATA 136811 | ||||| || || | || || |||| ||| | ||||| || | ||| | Sbjct 85975 ATAAGAAAGGTAAGGAGTTCAAATATTTTTCCAGAGCATTAAAACCTGTGATGGCACACA 85916 Query 136812 AAGTTGATTATCTTAATGAGTATATACCTAAAGCCTTT-AAAAATGTATCATCTCTTATT 136870 |||| | || | || || ||| | ||| |||| ||| ||| || | ||| || Sbjct 85915 AAGTGAGTCATTTCAAAGATTATCTTCCTCAAGCATTTCCCAAAGGTGAC-GATCTAATA 85857 Query 136871 TTAGATTCAGAAATAGTACTAGTAGAT---AAAAATAATAAACCATTACCATTTGGCAGT 136927 |||||| | ||| | || | || ||| || | | ||| ||| | |||||||| | Sbjct 85856 TTAGATGCTGAAGTGTTAATGGTGGATGTGAACACTGGTAAGCCACTGCCATTTGGAACC 85797 Query 136928 TTGGGTATACATAAAAAGAAGGAATATAATGATTCATCACTATGTTTATTTGTATTTGAT 136987 ||||| | ||| ||| | |||| || ||| || | ||||||| | | ||||||| Sbjct 85796 TTGGGGAAACACAAACATGCAGAATTCAAAGATGCACAAGTATGTTTGTATATATTTGAC 85737 Query 136988 TG 136989 || Sbjct 85736 TG 85735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561686874108360