Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq33365 116 7e-21 seq18227 86.0 1e-11 >seq33365 Length=5281 Score = 116 bits (128), Expect = 7e-21 Identities = 122/158 (77%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 25581 GCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAA 25640 ||||||| | ||| | || ||||| |||||||| ||||||||||| ||||| || || || Sbjct 4569 GCATTTTATAAAGCATGTCTTGGCCTTCTTTGCTGCCTCTGATGGGATAGTCAATGAAAA 4510 Query 25641 TC-TGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTT 25699 || |||| ||||| ||| || |||||||| | || |||| |||||||| || | Sbjct 4509 TCTTGTG-GAGAGGTTCTCCCAAGAAGTGCAAGTCACTGAAGCCAGATGTTTCTATGGAT 4451 Query 25700 TCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTAT 25737 | || || ||||| || ||||| ||||||||| ||||| Sbjct 4450 TTCAAATTGCCATGGAGAATGTTCACTCTGAGATGTAT 4413 >seq18227 Length=276284 Score = 86.0 bits (94), Expect = 1e-11 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 221509 GTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGC 221568 ||||||||||||||| || || ||||| || |||||||||||| | || ||| || Sbjct 241095 GTCGGCCAGTCCCTGAACACCAATACCAATAGGCCTGTGTCTCATATTCGAATTCTTAGC 241036 Query 221569 TTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTT 221628 |||||| || ||||| ||||| || || || | ||||| | || | ||||||||||| Sbjct 241035 TTCTGGTACTGGATAGAAGTTCACATCAATAATTTTGTTTAAATTTTGTGTGATGACTTT 240976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928147597482560