Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq18227 98.7 5e-16 >seq18227 Length=276284 Score = 98.7 bits (108), Expect = 5e-16 Identities = 299/454 (66%), Gaps = 10/454 (2%) Strand=Plus/Minus Query 24686 GCTGGTTTAGTTCTAAGATAATACATTCCAGTTTTCAATTTCTTCTTCCAACCGTAAAAA 24745 || ||||| ||||| | ||| ||||||||||| || | | ||||| | || ||| Sbjct 241796 GCAGGTTTGGTTCTTAAATAGTACATTCCAGTCTTGAGCCCAATTTTCCAGGCATAGAAA 241737 Query 24746 TGCATTGATGTTAGTTTTGCAATGTTTGCTGATTCTAAAAACAAGTTCATCGATTGAGCT 24805 || ||||| |||||||| | || | | | ||| | | || | |||||| Sbjct 241736 TGAATTGAAGTTAGTTTCCCGTAATTAGGTTCTGCTACATGGATATTGAAAGATTGACTC 241677 Query 24806 TGGCAAACAAAACGTTGTCTATCTGCAGCTAAGTCAATGATCGTTTTCATCGATATATCG 24865 ||| || ||| | |||||| ||||| | | ||| | || || | || || || Sbjct 241676 TGGTCAATAAATGCTCCTCTATCCGCAGCCATTTGAATAGTGGTCTTAACGGAAATCTCC 241617 Query 24866 TAAGCTGTTTTGTATCTCTCTTTTATCTCAGTTGGAATACTTGCAATATTTTGAACTGAT 24925 | | |||||||| ||| | || || || ||| || |||||||||| | || Sbjct 241616 CACACAGTTTTGTACAAATCTCTAATTTCTTGGGGTATATTTTCAATATTTTGGATAGAA 241557 Query 24926 CCATTTTCTCTCAATAGATTCAATCT-CATATTCGGTGTCCAAAGATTAATTTTT--TCA 24982 ||||| | | | |||| || ||| ||| | | |||| | | | | || ||| Sbjct 241556 CCATTGT-TATGAATAATGACATTCTTCATGT-CTTCGTCCCACAAGTCAGCTTGAGTCA 241499 Query 24983 AGATCTCTAATCAAGTGTTTATTTATGATAATAAATTCTCCAGACAAAACTCTTCTTATT 25042 | ||| || | || || | ||| | | ||||||||||||||| ||||||||| | Sbjct 241498 A-ATCCCTGAGTAAATGATGATTCACCACTTGAAATTCTCCAGACAACACTCTTCTT--T 241442 Query 25043 GATAA--GTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAG 25100 | ||| |||||| || ||||||||||| ||||||| ||||| | || || | |||| Sbjct 241441 GGTAAATGTTTGATGTAAATGGTTCAAATGATTCATTGTTTCCGAGAATCTGTGCTGTAG 241382 Query 25101 ATGCTGTTGGCATTAATGCTATTAATAGCGAATT 25134 | || ||||||||| |||| || || ||||| Sbjct 241381 AAGCAGTTGGCATTGGAGCTAGCAAAAGTGAATT 241348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252854813387675