Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21]
60,049 sequences; 728,788,927 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq8750 165 2e-35
seq18227 123 7e-23
>seq8750
Length=65573
Score = 165 bits (182), Expect = 2e-35
Identities = 340/500 (68%), Gaps = 18/500 (4%)
Strand=Plus/Plus
Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909
|||||||| || || | || ||||||| ||| | ||||| |||| ||||| ||
Sbjct 38534 CTATCAAATCTTCCGGGTCGTAATAATGCTTTGTCGAGGATATCAACTCTATTTGTAGCC 38593
Query 288910 GCCAATACAACAATAGATTCGGTTTGCT--TAAATCCATCCATACTTGTTAAAATTTGAT 288967
|| | ||||||| | |||| | || | | ||||||||||| ||| | |||||
Sbjct 38594 GCTAGCACAACAACA--TTCGTTGTGGTATTGAATCCATCCATTTCAACTAACAATTGAT 38651
Query 288968 TAAGTGTTTGTTCCCTTTCATCATTTGAACCT---CTTGAATCACCCGAATCGCTCCttt 289024
| | ||| | ||| |||| || ||| ||| |||| || |||
Sbjct 38652 TTAATGTATTTTCTTGTTCAGAATGGCCACCAAAGCTTCTTCCACC--------TCGTTT 38703
Query 289025 ttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAA 289084
| || ||||||||||| ||||| ||||| |||| | || |||| || || |||||| |
Sbjct 38704 TCTT-CCAACAGCATCTATTTCATCAATAAAAAGTATGCATGGAGCATGTTTTCTCGCCA 38762
Query 289085 TTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAG 289144
||| ||| | || ||||| | || | |||| ||||||| |||| |||| || ||||
Sbjct 38763 TTGAAAACATATCCCTTACTCTAGAAGGGCCAACACCAACAAACATCTCTAAGAACTCAG 38822
Query 289145 AAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204
| | ||||| ||||||| ||| |||||||| || || ||| | ||||| | ||
Sbjct 38823 ACCCTGATACAGTTATGAATGGTACGTTTGCTTCTCCAGCGGTTGCTTTTGCCAGCAATG 38882
Query 289205 TCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAG 289264
| || ||||| |||||||| || ||| | |||| || |||| |||||| ||| |
Sbjct 38883 TTTTGCCTGTACCAGGTGGGCCAGTTAACAATGCTCCTTTGGGTATTTTTGCTCCAAGAT 38942
Query 289265 ACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATAT-TTTGCC 289323
|||||| | ||| | |||||||| | |||| ||| || || ||| || |||
Sbjct 38943 CAATATATTGTTGAGGATTTTTTAAAAAGTTAACAAACTCCATAATCTC-TATCTTAGCC 39001
Query 289324 TCATCACATCCTGCTACATC 289343
|| ||||| ||||| |||||
Sbjct 39002 TCTTCACAACCTGCCACATC 39021
>seq18227
Length=276284
Score = 123 bits (136), Expect = 7e-23
Identities = 612/967 (63%), Gaps = 13/967 (1%)
Strand=Plus/Minus
Query 155396 GAAAAATGTGTCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCTGTAATTGCT 155455
|| |||||||||||| | |||||||| |||||||| | || | || || ||| |
Sbjct 241104 GACAAATGTGTCGGCCAGTCCCTGAACACCAATACCAATAGGCCTGTGTCTCATATT-CG 241046
Query 155456 CCTGCTTGTCTTCTTGTT-TGGGTAAAAATTCACATCAATAATGTTATTTAAATTTGTAA 155514
| ||| ||||| || ||| || || |||||||||||||| || |||||||||
Sbjct 241045 AATTCTTAGCTTCTGGTACTGGATAGAAGTTCACATCAATAATTTTGTTTAAATTTTGTG 240986
Query 155515 CCAATACCTTGGTTACGTCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAA 155574
| || || | || ||| |||||| | | | | ||||| || || |||||||
Sbjct 240985 TGATGACTTTTGATATTTCTTTTAATTTTGTGAAATTATAAGTTTTGTCTTCGTTTACAA 240926
Query 155575 ACATACCAAGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATT 155634
||||| | | | || || || | ||||||||| || || | || ||||||
Sbjct 240925 ACATATTCAAAGCTATTGAAGCTAAATTACATACAGCCACTTCATCTTCAGAAGTGTATT 240866
Query 155635 CTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATT 155694
| ||||| ||| || || || | || || || |||||||| || || || ||
Sbjct 240865 CAACAATTTCAGTACAGAGATTGCTGCATTTAATCGTTCCTAAATTTTTTTGATTGCTTT 240806
Query 155695 TACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCA 155754
| ||||| || | || ||||||| |||||||| ||||| ||||| | || || || |
Sbjct 240805 TCCTGTTGCAGGAGTCTTTGTATAACATGTATGGTGTTCCAGTCTCTACTTGGGCTTCTA 240746
Query 155755 GAAT--CTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTC 155812
||| |||| ||| | | | ||| || ||| | || | ||| ||
Sbjct 240745 TAATAGCTTT--CCATAATACTTGAGCACGAACTTGTCTAACATAATTATTCTCCTTTTC 240688
Query 155813 ATA--TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCAC 155870
||| ||||||||| || | | || || || | ||| | ||||| |||||
Sbjct 240687 ATATTTTTCATATAAGGCCT--CAAACTCTTCTCCCCAGGTGTCAGTTAGTCCGGGGCAA 240630
Query 155871 TTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCA 155930
|||| ||||| | || ||| || ||||| || | | ||| |||| ||||
Sbjct 240629 TTATGAGGGCACATCAAGCTCCAGTTTCCATTACTTTCAACTCTTTTCATGAATAAATCA 240570
Query 155931 CTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTC 155990
||| | ||||| || | ||||| || ||||| | ||| ||||||
Sbjct 240569 GGTATCCACAAGGCATAAAACAATTCCCTAGCACGAACTTCCTCTTTGCCAGTATTCTTT 240510
Query 155991 CGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTA 156050
|| || | || || ||||| | ||| || || | || | ||||| |
Sbjct 240509 TTCAGATCCAGAAACTCAAATATATCCGCATGCCACGGTTCTAAGTATACTGCAAATGCA 240450
Query 156051 CCATTCCTC---TTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGC 156107
|| |||| || || || ||||| ||||| | ||| || ||||| | || | |||
Sbjct 240449 CCTGGCCTCTTATTTCCTCCTTGATCGACATATCTAGCTGTGTTATTATACACTCTGAGC 240390
Query 156108 ATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGA 156167
|| || | | |||||| ||| ||||| ||||| |||| | || || | |
Sbjct 240389 ATGGGTACTAGACCATTCGAAACACCATTTGTTCCAGCAATAGTTGTGCCTTTTGCTCTA 240330
Query 156168 ACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTT 156227
| ||| | ||| | |||||| ||||| | |||| || || || |||| |||
Sbjct 240329 ATGCAATGGACATGCAATCCAATCCCACCAGCAGATTTTGATATCAAGGCACATTGCTTA 240270
Query 156228 ACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTT 156287
| ||||| | || || || || ||||||| ||| | || || | |||| || |
Sbjct 240269 AGAGTATCATATATTCCCTCTATGCTGTCATCTTTCATGGCTATTAAAAAGCATGATGAT 240210
Query 156288 AATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTA 156347
||||||||| || || |||| ||| || || || | |||||| ||||||| ||
Sbjct 240209 AATTGAGGTTTGGGAGTGGCAGCTGAGAAGAGAGTTGGGCTGGCATGAGTAAAATATTTT 240150
Query 156348 TTAGACA 156354
| |||||
Sbjct 240149 TCAGACA 240143
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1470685216194513
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |