Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq8750 165 2e-35 seq18227 123 7e-23 >seq8750 Length=65573 Score = 165 bits (182), Expect = 2e-35 Identities = 340/500 (68%), Gaps = 18/500 (4%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| || || | || ||||||| ||| | ||||| |||| ||||| || Sbjct 38534 CTATCAAATCTTCCGGGTCGTAATAATGCTTTGTCGAGGATATCAACTCTATTTGTAGCC 38593 Query 288910 GCCAATACAACAATAGATTCGGTTTGCT--TAAATCCATCCATACTTGTTAAAATTTGAT 288967 || | ||||||| | |||| | || | | ||||||||||| ||| | ||||| Sbjct 38594 GCTAGCACAACAACA--TTCGTTGTGGTATTGAATCCATCCATTTCAACTAACAATTGAT 38651 Query 288968 TAAGTGTTTGTTCCCTTTCATCATTTGAACCT---CTTGAATCACCCGAATCGCTCCttt 289024 | | ||| | ||| |||| || ||| ||| |||| || ||| Sbjct 38652 TTAATGTATTTTCTTGTTCAGAATGGCCACCAAAGCTTCTTCCACC--------TCGTTT 38703 Query 289025 ttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAA 289084 | || ||||||||||| ||||| ||||| |||| | || |||| || || |||||| | Sbjct 38704 TCTT-CCAACAGCATCTATTTCATCAATAAAAAGTATGCATGGAGCATGTTTTCTCGCCA 38762 Query 289085 TTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAG 289144 ||| ||| | || ||||| | || | |||| ||||||| |||| |||| || |||| Sbjct 38763 TTGAAAACATATCCCTTACTCTAGAAGGGCCAACACCAACAAACATCTCTAAGAACTCAG 38822 Query 289145 AAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 | | ||||| ||||||| ||| |||||||| || || ||| | ||||| | || Sbjct 38823 ACCCTGATACAGTTATGAATGGTACGTTTGCTTCTCCAGCGGTTGCTTTTGCCAGCAATG 38882 Query 289205 TCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAG 289264 | || ||||| |||||||| || ||| | |||| || |||| |||||| ||| | Sbjct 38883 TTTTGCCTGTACCAGGTGGGCCAGTTAACAATGCTCCTTTGGGTATTTTTGCTCCAAGAT 38942 Query 289265 ACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATAT-TTTGCC 289323 |||||| | ||| | |||||||| | |||| ||| || || ||| || ||| Sbjct 38943 CAATATATTGTTGAGGATTTTTTAAAAAGTTAACAAACTCCATAATCTC-TATCTTAGCC 39001 Query 289324 TCATCACATCCTGCTACATC 289343 || ||||| ||||| ||||| Sbjct 39002 TCTTCACAACCTGCCACATC 39021 >seq18227 Length=276284 Score = 123 bits (136), Expect = 7e-23 Identities = 612/967 (63%), Gaps = 13/967 (1%) Strand=Plus/Minus Query 155396 GAAAAATGTGTCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCTGTAATTGCT 155455 || |||||||||||| | |||||||| |||||||| | || | || || ||| | Sbjct 241104 GACAAATGTGTCGGCCAGTCCCTGAACACCAATACCAATAGGCCTGTGTCTCATATT-CG 241046 Query 155456 CCTGCTTGTCTTCTTGTT-TGGGTAAAAATTCACATCAATAATGTTATTTAAATTTGTAA 155514 | ||| ||||| || ||| || || |||||||||||||| || ||||||||| Sbjct 241045 AATTCTTAGCTTCTGGTACTGGATAGAAGTTCACATCAATAATTTTGTTTAAATTTTGTG 240986 Query 155515 CCAATACCTTGGTTACGTCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAA 155574 | || || | || ||| |||||| | | | | ||||| || || ||||||| Sbjct 240985 TGATGACTTTTGATATTTCTTTTAATTTTGTGAAATTATAAGTTTTGTCTTCGTTTACAA 240926 Query 155575 ACATACCAAGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATT 155634 ||||| | | | || || || | ||||||||| || || | || |||||| Sbjct 240925 ACATATTCAAAGCTATTGAAGCTAAATTACATACAGCCACTTCATCTTCAGAAGTGTATT 240866 Query 155635 CTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATT 155694 | ||||| ||| || || || | || || || |||||||| || || || || Sbjct 240865 CAACAATTTCAGTACAGAGATTGCTGCATTTAATCGTTCCTAAATTTTTTTGATTGCTTT 240806 Query 155695 TACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCA 155754 | ||||| || | || ||||||| |||||||| ||||| ||||| | || || || | Sbjct 240805 TCCTGTTGCAGGAGTCTTTGTATAACATGTATGGTGTTCCAGTCTCTACTTGGGCTTCTA 240746 Query 155755 GAAT--CTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTC 155812 ||| |||| ||| | | | ||| || ||| | || | ||| || Sbjct 240745 TAATAGCTTT--CCATAATACTTGAGCACGAACTTGTCTAACATAATTATTCTCCTTTTC 240688 Query 155813 ATA--TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCAC 155870 ||| ||||||||| || | | || || || | ||| | ||||| ||||| Sbjct 240687 ATATTTTTCATATAAGGCCT--CAAACTCTTCTCCCCAGGTGTCAGTTAGTCCGGGGCAA 240630 Query 155871 TTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCA 155930 |||| ||||| | || ||| || ||||| || | | ||| |||| |||| Sbjct 240629 TTATGAGGGCACATCAAGCTCCAGTTTCCATTACTTTCAACTCTTTTCATGAATAAATCA 240570 Query 155931 CTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTC 155990 ||| | ||||| || | ||||| || ||||| | ||| |||||| Sbjct 240569 GGTATCCACAAGGCATAAAACAATTCCCTAGCACGAACTTCCTCTTTGCCAGTATTCTTT 240510 Query 155991 CGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTA 156050 || || | || || ||||| | ||| || || | || | ||||| | Sbjct 240509 TTCAGATCCAGAAACTCAAATATATCCGCATGCCACGGTTCTAAGTATACTGCAAATGCA 240450 Query 156051 CCATTCCTC---TTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGC 156107 || |||| || || || ||||| ||||| | ||| || ||||| | || | ||| Sbjct 240449 CCTGGCCTCTTATTTCCTCCTTGATCGACATATCTAGCTGTGTTATTATACACTCTGAGC 240390 Query 156108 ATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGA 156167 || || | | |||||| ||| ||||| ||||| |||| | || || | | Sbjct 240389 ATGGGTACTAGACCATTCGAAACACCATTTGTTCCAGCAATAGTTGTGCCTTTTGCTCTA 240330 Query 156168 ACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTT 156227 | ||| | ||| | |||||| ||||| | |||| || || || |||| ||| Sbjct 240329 ATGCAATGGACATGCAATCCAATCCCACCAGCAGATTTTGATATCAAGGCACATTGCTTA 240270 Query 156228 ACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTT 156287 | ||||| | || || || || ||||||| ||| | || || | |||| || | Sbjct 240269 AGAGTATCATATATTCCCTCTATGCTGTCATCTTTCATGGCTATTAAAAAGCATGATGAT 240210 Query 156288 AATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTA 156347 ||||||||| || || |||| ||| || || || | |||||| ||||||| || Sbjct 240209 AATTGAGGTTTGGGAGTGGCAGCTGAGAAGAGAGTTGGGCTGGCATGAGTAAAATATTTT 240150 Query 156348 TTAGACA 156354 | ||||| Sbjct 240149 TCAGACA 240143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470685216194513